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Update gitignore
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5
.gitignore
vendored
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.gitignore
vendored
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@ -9,14 +9,15 @@
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*.pcm
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*.o
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*.a
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*.so
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*.swp
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*.pickle
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.DS_Store
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Makefile
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*.make
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__pycache__
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.vscode/
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build/
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lib/
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bin/
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###Keep this file###
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5
bin/.gitignore
vendored
5
bin/.gitignore
vendored
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@ -1,5 +0,0 @@
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###keep only the directory, not the contents###
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*
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!.gitignore
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!PyPlotter
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!PyPlotViewer
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@ -1,5 +0,0 @@
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#!/bin/bash
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FileName=$1;
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./src/Plotters/Python/ViewPyPlots.py ${FileName}
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@ -1,6 +0,0 @@
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#!/bin/bash
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InputFile=$1;
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OutputFile=$2;
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./src/Plotters/Python/PyPlotter.py ${InputFile} ${OutputFile}
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@ -1,133 +0,0 @@
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#ifndef ELOSS_TABLES_H
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#define ELOSS_TABLES_H
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namespace Mask {
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#define MAX_Z 93 //Maximum number of elements for which we have hydrogen coefficients
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/*Atomic Masses for elements H through U. Taken from ELAST data*/
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static double NATURAL_MASS[MAX_Z] =
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{0,
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1.00797, 4.0026, 6.939, 9.0122, 10.818,
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12.01115, 14.0067, 15.9994, 18.99984, 20.183,
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22.9898, 24.312, 26.9815, 28.086, 30.9738,
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32.064, 35.453, 39.948, 39.102, 40.08,
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44.956, 47.90, 50.942, 51.996, 54.938,
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55.847, 58.933, 58.71, 63.54, 65.37,
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69.72, 72.59, 74.922, 78.96, 79.909,
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83.80, 85.47, 87.62, 88.909, 91.22,
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92.906, 95.94, 98., 101.07, 102.905,
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106.4, 107.87, 112.4, 114.82, 118.69,
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121.75, 127.60, 126.904, 131.3, 132.905,
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137.34, 138.91, 140.12, 140.907, 144.24,
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146., 150.35, 151.96, 157.25, 158.924,
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162.50, 164.93, 167.26, 168.934, 173.04,
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174.97, 178.49, 180.948, 183.85, 186.2,
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190.2, 192.2, 195.09, 196.967, 200.59,
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204.37, 207.19, 208.98, 209., 210.,
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222., 223., 226., 227., 232.038,
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231., 238.03 };
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/*Stopping power coefficients for hydrogen into Z
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*Taken from Ziegler, Hydrogen Stopping Powers and Ranges in All Elements, Volume 3 of
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*The Stopping and Ranges of Ions in Matter, 1977, Pergamon Press Inc.
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*Expanded table for method given in O.G. Spanc
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*Note: some elements represent extrapolations when there was no data to fit
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*/
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static double HYDROGEN_COEFF[MAX_Z][12] = {
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/*Blank*/{0.,0.,0.,0.,0.,0.,0.,0.,0.,0.,0.,0.},
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/*H*/{1.262,1.44,242.6,1.2E4,0.1159,0.0005099,5.436E4,-5.052,2.049,-0.3044,0.01966,-0.0004659},
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/*He*/{1.229,1.397,484.5,5873,0.05225,0.00102,2.451E4,-2.158,0.8278,-0.1172,0.007259,-0.000166},
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/*Li*/{1.411,1.6,725.6,3013,0.04578,0.00153,2.147E4,-0.5831,0.562,-0.1183,0.009298,-0.0002498},
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/*Be*/{2.248,2.59,966,153.8,0.03475,0.002039,1.63E4,0.2779,0.1745,-0.05684,0.005155,-0.0001488},
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/*B*/{2.474,2.815,1206,1060,0.02855,0.002549,1.345E4,-2.445,1.283,-0.2205,0.0156,-0.000393},
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/*C*/{2.631,2.989,1445,957.2,0.02819,0.003059,1.322E4,-4.38,2.044,-0.3283,0.02221,-0.0005417},
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/*N*/{2.954,3.35,1683,1900,0.02513,0.003569,1.179E4,-5.054,2.325,-0.3713,0.02506,-0.0006109},
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/*O*/{2.652,3,1920,2000,0.0223,0.004079,1.046E4,-6.734,3.019,-0.4748,0.03171,-0.0007669},
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/*F*/{2.085,2.352,2157,2634,0.01816,0.004589,8517,-5.571,2.449,-0.3781,0.02483,-0.0005919},
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/*Ne*/{1.951,2.199,2393,2699,0.01568,0.005099,7353,-4.408,1.879,-0.2814,0.01796,-0.0004168},
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/*Na*/{2.542,2.869,2628,1854,0.01472,0.005609,6905,-4.959,2.073,-0.3054,0.01921,-0.0004403},
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/*Mg*/{3.792,4.293,2862,1009,0.01397,0.006118,6551,-5.51,2.266,-0.3295,0.02047,-0.0004637},
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/*Al*/{4.154,4.739,2766,164.5,0.02023,0.006628,6309,-6.061,2.46,-0.3535,0.02173,-0.0004871},
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/*Si*/{4.15,4.7,3329,550,0.01321,0.007138,6194,-6.294,2.538,-0.3628,0.0222,-0.0004956},
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/*P*/{3.232,3.647,3561,1560,0.01267,0.007648,5942,-6.527,2.616,-0.3721,0.02267,-0.000504},
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/*S*/{3.447,3.891,3792,1219,0.01211,0.008158,5678,-6.761,2.694,-0.3814,0.02314,-0.0005125},
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/*Cl*/{5.047,5.714,4023,878.6,0.01178,0.008668,5524,-6.994,2.773,-0.3907,0.02361,-0.0005209},
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/*Ar*/{5.731,6.5,4253,530,0.01123,0.009178,5268,-7.227,2.851,-0.4,0.02407,-0.0005294},
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/*K*/{5.151,5.833,4482,545.7,0.01129,0.009687,5295,-7.44,2.923,-0.4094,0.02462,-0.0005411},
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/*Ca*/{5.521,6.252,4710,553.3,0.01112,0.0102,5214,-7.653,2.995,-0.4187,0.02516,-0.0005529},
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/*Sc*/{5.201,5.884,4938,560.9,0.009995,0.01071,4688,-8.012,3.123,-0.435,0.02605,-0.0005707},
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/*Ti*/{4.862,5.496,5165,568.5,0.009474,0.01122,4443,-8.371,3.251,-0.4513,0.02694,-0.0005886},
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/*V*/{4.48,5.055,5391,952.3,0.009117,0.01173,4276,-8.731,3.379,-0.4676,0.02783,-0.0006064},
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/*Cr*/{3.983,4.489,5616,1336,0.008413,0.01224,3946,-9.09,3.507,-0.4838,0.02872,-0.0006243},
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/*Mn*/{3.469,3.907,5725,1461,0.008829,0.01275,3785,-9.449,3.635,-0.5001,0.02961,-0.0006421},
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/*Fe*/{3.519,3.963,6065,1243,0.007782,0.01326,3650,-9.809,3.763,-0.5164,0.0305,-0.00066},
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/*Co*/{3.14,3.535,6288,1372,0.007361,0.01377,3453,-10.17,3.891,-0.5327,0.03139,-0.0006779},
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/*Ni*/{3.553,4.004,6205,555.1,0.008763,0.01428,3297,-10.53,4.019,-0.549,0.03229,-0.0006957},
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/*Cu*/{3.696,4.175,4673,387.8,0.02188,0.01479,3174,-11.18,4.252,-0.5791,0.03399,-0.0007314},
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/*Zn*/{4.21,4.75,6953,295.2,0.006809,0.0153,3194,-11.57,4.394,-0.598,0.03506,-0.0007537},
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/*Ga*/{5.041,5.697,7173,202.6,0.006725,0.01581,3154,-11.95,4.537,-0.6169,0.03613,-0.0007759},
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/*Ge*/{5.554,6.3,6496,110,0.009689,0.01632,3097,-12.34,4.68,-0.6358,0.03721,-0.0007981},
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/*As*/{5.323,6.012,7611,292.5,0.006447,0.01683,3024,-12.72,4.823,-0.6547,0.03828,-0.0008203},
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/*Se*/{5.874,6.656,7395,117.5,0.007684,0.01734,3006,-13.11,4.965,-0.6735,0.03935,-0.0008425},
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/*Br*/{5.611,6.335,8046,365.2,0.006244,0.01785,2928,-13.4,5.083,-0.6906,0.04042,-0.0008675},
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/*Kr*/{6.411,7.25,8262,220,0.006087,0.01836,2855,-13.69,5.2,-0.7076,0.0415,-0.0008925},
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/*Rb*/{5.694,6.429,8478,292.9,0.006087,0.01886,2855,-13.92,5.266,-0.714,0.04173,-0.0008943},
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/*Sr*/{6.339,7.159,8693,330.3,0.006003,0.01937,2815,-14.14,5.331,-0.7205,0.04196,-0.0008962},
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/*Y*/{6.407,7.234,8907,367.8,0.005889,0.01988,2762,-14.36,5.397,-0.7269,0.04219,-0.000898},
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/*Zr*/{6.734,7.603,9120,405.2,0.005765,0.02039,2704,-14.59,5.463,-0.7333,0.04242,-0.0008998},
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/*Nb*/{6.902,7.791,9333,442.7,0.005587,0.0209,2621,-16.22,6.094,-0.8225,0.04791,-0.001024},
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/*Mo*/{6.425,7.248,9545,480.2,0.005367,0.02141,2517,-17.85,6.725,-0.9116,0.05339,-0.001148},
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/*Tc*/{6.799,7.671,9756,517.6,0.005315,0.02192,2493,-17.96,6.752,-0.9135,0.05341,-0.001147},
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/*Ru*/{6.108,6.887,9966,555.1,0.005151,0.02243,2416,-18.07,6.779,-0.9154,0.05342,-0.001145},
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/*Rh*/{5.924,6.677,1.018E4,592.5,0.004919,0.02294,2307,-18.18,6.806,-0.9173,0.05343,-0.001143},
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/*Pd*/{5.238,5.9,1.038E4,630,0.004758,0.02345,2231,-18.28,6.833,-0.9192,0.05345,-0.001142},
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/*Ag*/{5.623,6.354,7160,337.6,0.01394,0.02396,2193,-18.39,6.86,-0.9211,0.05346,-0.00114},
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/*Cd*/{5.814,6.554,1.08E4,355.5,0.004626,0.02447,2170,-18.62,6.915,-0.9243,0.0534,-0.001134},
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/*In*/{6.23,7.024,1.101E4,370.9,0.00454,0.02498,2129,-18.85,6.969,-0.9275,0.05335,-0.001127},
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/*Sn*/{6.41,7.227,1.121E4,386.4,0.004474,0.02549,2099,-19.07,7.024,-0.9308,0.05329,-0.001121},
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/*Sb*/{7.5,8.48,8608,348,0.009074,0.026,2069,-19.57,7.225,-0.9603,0.05518,-0.001165},
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/*Te*/{6.979,7.871,1.162E4,392.4,0.004402,0.02651,2065,-20.07,7.426,-0.9899,0.05707,-0.001209},
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/*I*/{7.725,8.716,1.183E4,394.8,0.004376,0.02702,2052,-20.56,7.627,-1.019,0.05896,-0.001254},
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/*Xe*/{8.231,9.289,1.203E4,397.3,0.004384,0.02753,2056,-21.06,7.828,-1.049,0.06085,-0.001298},
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/*Cs*/{7.287,8.218,1.223E4,399.7,0.004447,0.02804,2086,-20.4,7.54,-1.004,0.05782,-0.001224},
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/*Ba*/{7.899,8.911,1.243E4,402.1,0.004511,0.02855,2116,-19.74,7.252,-0.9588,0.05479,-0.001151},
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/*La*/{8.041,9.071,1.263E4,404.5,0.00454,0.02906,2129,-19.08,6.964,-0.9136,0.05176,-0.001077},
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/*Ce*/{7.489,8.444,1.283E4,406.9,0.00442,0.02957,2073,-18.43,6.677,-0.8684,0.04872,-0.001003},
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/*Pr*/{7.291,8.219,1.303E4,409.3,0.004298,0.03008,2016,-17.77,6.389,-0.8233,0.04569,-0.0009292},
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/*Nd*/{7.098,8,1.323E4,411.8,0.004182,0.03059,1962,-17.11,6.101,-0.7781,0.04266,-0.0008553},
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/*Pm*/{6.91,7.786,1.343E4,414.2,0.00405,0.0311,1903,-16.45,5.813,-0.733,0.03963,-0.0007815},
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/*Sm*/{6.728,7.58,1.362E4,416.6,0.003976,0.03161,1865,-15.79,5.526,-0.6878,0.0366,-0.0007077},
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/*Eu*/{6.551,7.38,1.382E4,419,0.003877,0.03212,1819,-15.13,5.238,-0.6426,0.03357,-0.0006339},
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/*Gd*/{6.739,7.592,1.402E4,421.4,0.003863,0.03263,1812,-14.47,4.95,-0.5975,0.03053,-0.0005601},
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/*Tb*/{6.212,6.996,1.421E4,423.9,0.003725,0.03314,1747,-14.56,4.984,-0.6022,0.03082,-0.0005668},
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/*Dy*/{5.517,6.21,1.44E4,426.3,0.003632,0.03365,1703,-14.65,5.018,-0.6069,0.03111,-0.0005734},
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/*Ho*/{5.219,5.874,1.46E4,428.7,0.003498,0.03416,1640,-14.74,5.051,-0.6117,0.03141,-0.0005801},
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/*Er*/{5.071,5.706,1.479E4,433,0.003405,0.03467,1597,-14.83,5.085,-0.6164,0.0317,-0.0005867},
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/*Tm*/{4.926,5.542,1.498E4,433.5,0.003342,0.03518,1567,-14.91,5.119,-0.6211,0.03199,-0.0005933},
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/*Yb*/{4.787, 5.386,1.517E4,435.9,0.003292,0.03569,1544,-15,5.153,-0.6258,0.03228,-0.0006},
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/*Lu*/{4.893, 5.505,1.536E4,438.4,0.003243,0.0362,1521,-15.09,5.186,-0.6305,0.03257,-0.0006066},
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/*Hf*/{5.028, 5.657,1.555E4,440.8,0.003195,0.03671,1499,-15.18,5.22,-0.6353,0.03286,-0.0006133},
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/*Ta*/{4.738, 5.329,1.574E4,443.2,0.003186,0.03722,1494,-15.27,5.254,-0.64,0.03315,-0.0006199},
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/*W*/{4.574, 5.144,1.593E4,442.4,0.003144,0.03773,1475,-15.67,5.392,-0.6577,0.03418,-0.0006426},
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/*Re*/{5.2, 5.851,1.612E4,441.6,0.003122,0.03824,1464,-16.07,5.529,-0.6755,0.03521,-0.0006654},
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/*Os*/{5.07, 5.704,1.63E4,440.9,0.003082,0.03875,1446,-16.47,5.667,-0.6932,0.03624,-0.0006881},
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/*Ir*/{4.945, 5.563,1.649E4,440.1,0.002965,0.03926,1390,-16.88,5.804,-0.711,0.03727,-0.0007109},
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/*Pt*/{4.476, 5.034,1.667E4,439.3,0.002871,0.03977,1347,-17.28,5.942,-0.7287,0.0383,-0.0007336},
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/*Au*/{4.856, 5.46,1.832E4,438.5,0.002542,0.04028,1354,-17.02,5.846,-0.7149,0.0374,-0.0007114},
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/*Hg*/{4.308, 4.843,1.704E4,487.8,0.002882,0.04079,1352,-17.84,6.183,-0.7659,0.04076,-0.0007925},
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/*Tl*/{4.723, 5.311,1.722E4,537,0.002913,0.0413,1366,-18.66,6.52,-0.8169,0.04411,-0.0008737},
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/*Pb*/{5.319, 5.982,1.74E4,586.3,0.002871,0.04181,1347,-19.48,6.857,-0.8678,0.04747,-0.0009548},
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/*Bi*/{5.956, 6.7,1.78E4,677,0.00266,0.04232,1336,-19.55,6.871,-0.8686,0.04748,-0.0009544},
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/*Po*/{6.158, 6.928,1.777E4,586.3,0.002812,0.04283,1319,-19.62,6.884,-0.8694,0.04748,-0.000954},
|
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/*At*/{6.204, 6.979,1.795E4,586.3,0.002776,0.04334,1302,-19.69,6.898,-0.8702,0.04749,-0.0009536},
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/*Rn*/{6.181, 6.954,1.812E4,586.3,0.002748,0.04385,1289,-19.76,6.912,-0.871,0.04749,-0.0009532},
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/*Fr*/{6.949, 7.82,1.83E4,586.3,0.002737,0.04436,1284,-19.83,6.926,-0.8718,0.0475,-0.0009528},
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/*Ra*/{7.506, 8.448,1.848E4,586.3,0.002727,0.04487,1279,-19.9,6.94,-0.8726,0.04751,-0.0009524},
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/*Ac*/{7.649, 8.609,1.866E4,586.3,0.002697,0.04538,1265,-19.97,6.953,-0.8733,0.04751,-0.000952},
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/*Th*/{7.71, 8.679,1.883E4,586.3,0.002641,0.04589,1239,-20.04,6.967,-0.8741,0.04752,-0.0009516},
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/*Pa*/{7.407, 8.336,1.901E4,586.3,0.002603,0.0464,1221,-20.11,6.981,-0.8749,0.04752,-0.0009512},
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/*U*/{7.29, 8.204,1.918E4,586.3,0.002573,0.04691,1207,-20.18,6.995,-0.8757,0.04753,-0.0009508}
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};
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}
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#endif
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@ -1,58 +0,0 @@
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/*
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EnergyLoss.h
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Code for calculating the energy loss of a charged, massive particle through an arbitrary medium.
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Based on code written by D.W. Visser at Yale for the original SPANC. Uses energy loss calulations
|
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described by Ziegler in various SRIM textbooks.
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Written by G.W. McCann Aug. 2020
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|
||||
*/
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#ifndef ENERGYLOSS_H
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#define ENERGYLOSS_H
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||||
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||||
#include <iostream>
|
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#include <string>
|
||||
#include <vector>
|
||||
#include <fstream>
|
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#include <cmath>
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#include "MassLookup.h"
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namespace Mask {
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class EnergyLoss {
|
||||
|
||||
public:
|
||||
EnergyLoss();
|
||||
~EnergyLoss();
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double GetEnergyLoss(int zp, int ap, double e_initial, double thickness);
|
||||
double GetReverseEnergyLoss(int zp, int ap, double e_final, double thickness);
|
||||
double GetRange(double energy);
|
||||
void SetTargetComponents(const std::vector<int>& Zt, const std::vector<int>& At, const std::vector<int>& Stoich);
|
||||
|
||||
private:
|
||||
double GetElectronicStoppingPower(double energy);
|
||||
double GetNuclearStoppingPower(double energy);
|
||||
double GetTotalStoppingPower(double energy);
|
||||
double Hydrogen_dEdx_Low(double e_per_u, int z);
|
||||
double Hydrogen_dEdx_Med(double e_per_u, int z);
|
||||
double Hydrogen_dEdx_High(double e_per_u, double energy, int z);
|
||||
double CalculateEffectiveChargeRatio(double e_per_u, int z);
|
||||
|
||||
int ZP, AP;
|
||||
double MP; //units of u, isotopic
|
||||
double comp_denom;
|
||||
std::vector<int> ZT, AT;
|
||||
std::vector<double> targ_composition;
|
||||
|
||||
//constants for calculations
|
||||
static constexpr double MAX_FRACTIONAL_STEP = 0.001;
|
||||
static constexpr double MAX_DEPTH = 50;
|
||||
static constexpr double MAX_H_E_PER_U = 100000.0;
|
||||
static constexpr double AVOGADRO = 0.60221367; //N_A times 10^(-24) for converting
|
||||
static constexpr double MEV2U = 1.0/931.4940954;
|
||||
static constexpr double H_RESTMASS = 938.27231; //MeV, for beta calc
|
||||
};
|
||||
}
|
||||
|
||||
#endif
|
||||
|
|
@ -1,77 +0,0 @@
|
|||
#ifndef MASKFILE_H
|
||||
#define MASKFILE_H
|
||||
|
||||
#include <string>
|
||||
#include <fstream>
|
||||
#include <vector>
|
||||
|
||||
#include "Nucleus.h"
|
||||
#include "RxnType.h"
|
||||
|
||||
namespace Mask {
|
||||
|
||||
struct MaskFileHeader {
|
||||
RxnType rxn_type = RxnType::None;
|
||||
int nsamples = -1;
|
||||
};
|
||||
|
||||
struct MaskFileData {
|
||||
std::vector<double> E, KE, p, theta, phi; //ordered: target, (if not decay)projectile, ejectile, residual, break1...
|
||||
std::vector<int> Z, A;
|
||||
std::vector<bool> detect_flag;
|
||||
bool eof = false; //flag on end of file
|
||||
};
|
||||
|
||||
class MaskFile {
|
||||
public:
|
||||
enum class FileType {
|
||||
read,
|
||||
write,
|
||||
append,
|
||||
none
|
||||
};
|
||||
|
||||
MaskFile();
|
||||
MaskFile(const std::string& name, MaskFile::FileType type);
|
||||
bool Open(const std::string& name, MaskFile::FileType type);
|
||||
inline bool IsOpen() { return file.is_open(); }
|
||||
void Close();
|
||||
|
||||
void WriteHeader(RxnType rxn_type, int nsamples);
|
||||
void WriteData(const std::vector<Nucleus>& data);
|
||||
void WriteData(const MaskFileData& data);
|
||||
MaskFileHeader ReadHeader();
|
||||
MaskFileData ReadData();
|
||||
|
||||
|
||||
|
||||
private:
|
||||
|
||||
FileType file_type;
|
||||
std::string filename;
|
||||
uint64_t buffer_position;
|
||||
uint64_t buffer_end;
|
||||
uint32_t data_size;
|
||||
RxnType m_rxn_type;
|
||||
uint32_t buffersize_bytes;
|
||||
|
||||
std::fstream file;
|
||||
|
||||
std::vector<char> data_buffer;
|
||||
|
||||
static constexpr uint32_t onestep_rxn_n = 2;
|
||||
static constexpr uint32_t twostep_rxn_n = 4;
|
||||
static constexpr uint32_t threestep_rxn_n = 6;
|
||||
|
||||
static constexpr uint64_t buffersize = 10000; //number of events
|
||||
static constexpr int width = 0;
|
||||
static constexpr int precision = 3;
|
||||
|
||||
static constexpr std::size_t double_size = sizeof(double);
|
||||
static constexpr std::size_t int_size = sizeof(uint32_t);
|
||||
static constexpr std::size_t bool_size = sizeof(bool);
|
||||
};
|
||||
|
||||
};
|
||||
|
||||
#endif
|
||||
|
|
@ -1,78 +0,0 @@
|
|||
/*
|
||||
Classes which define rotations about the x, y, and z axes. Using these,
|
||||
any arbitrary orientation can be described. Methods implemented for vector multiplication
|
||||
as well as generating the inverse of the rotation.
|
||||
*/
|
||||
#ifndef ROTATION_H
|
||||
#define ROTATION_H
|
||||
|
||||
#include "Vec3.h"
|
||||
|
||||
namespace Mask {
|
||||
|
||||
class XRotation {
|
||||
public:
|
||||
XRotation();
|
||||
XRotation(double ang);
|
||||
~XRotation();
|
||||
Vec3 Rotate(const Vec3& vector);
|
||||
inline void SetAngle(double ang) { m_angle = ang; GenerateMatrix(); }
|
||||
inline XRotation GetInverse() { return XRotation(-m_angle); }
|
||||
inline Vec3 operator*(const Vec3& vector) {
|
||||
double x = m_matrix[0][0]*vector[0] + m_matrix[0][1]*vector[1] + m_matrix[0][2]*vector[2];
|
||||
double y = m_matrix[1][0]*vector[0] + m_matrix[1][1]*vector[1] + m_matrix[1][2]*vector[2];
|
||||
double z = m_matrix[2][0]*vector[0] + m_matrix[2][1]*vector[1] + m_matrix[2][2]*vector[2];
|
||||
return Vec3(x, y, z);
|
||||
}
|
||||
|
||||
private:
|
||||
void GenerateMatrix();
|
||||
double m_angle;
|
||||
double m_matrix[3][3];
|
||||
};
|
||||
|
||||
class YRotation {
|
||||
public:
|
||||
YRotation();
|
||||
YRotation(double ang);
|
||||
~YRotation();
|
||||
Vec3 Rotate(const Vec3& vector);
|
||||
inline void SetAngle(double ang) { m_angle = ang; GenerateMatrix(); }
|
||||
inline YRotation GetInverse() { return YRotation(-m_angle); }
|
||||
inline Vec3 operator*(const Vec3& vector) {
|
||||
double x = m_matrix[0][0]*vector[0] + m_matrix[0][1]*vector[1] + m_matrix[0][2]*vector[2];
|
||||
double y = m_matrix[1][0]*vector[0] + m_matrix[1][1]*vector[1] + m_matrix[1][2]*vector[2];
|
||||
double z = m_matrix[2][0]*vector[0] + m_matrix[2][1]*vector[1] + m_matrix[2][2]*vector[2];
|
||||
return Vec3(x, y, z);
|
||||
}
|
||||
|
||||
private:
|
||||
void GenerateMatrix();
|
||||
double m_angle;
|
||||
double m_matrix[3][3];
|
||||
};
|
||||
|
||||
class ZRotation {
|
||||
public:
|
||||
ZRotation();
|
||||
ZRotation(double ang);
|
||||
~ZRotation();
|
||||
Vec3 Rotate(const Vec3& vector);
|
||||
inline void SetAngle(double ang) { m_angle = ang; GenerateMatrix(); }
|
||||
inline ZRotation GetInverse() { return ZRotation(-m_angle); }
|
||||
inline Vec3 operator*(const Vec3& vector) {
|
||||
double x = m_matrix[0][0]*vector[0] + m_matrix[0][1]*vector[1] + m_matrix[0][2]*vector[2];
|
||||
double y = m_matrix[1][0]*vector[0] + m_matrix[1][1]*vector[1] + m_matrix[1][2]*vector[2];
|
||||
double z = m_matrix[2][0]*vector[0] + m_matrix[2][1]*vector[1] + m_matrix[2][2]*vector[2];
|
||||
return Vec3(x, y, z);
|
||||
}
|
||||
|
||||
private:
|
||||
void GenerateMatrix();
|
||||
double m_angle;
|
||||
double m_matrix[3][3];
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
|
|
@ -1,61 +0,0 @@
|
|||
/*
|
||||
Class to represent a 3-space vector in both cartesian and spherical coordinates. Can perform vector
|
||||
addition, subtraction, and dot product.
|
||||
|
||||
--GWM Dec 2020
|
||||
*/
|
||||
#ifndef VEC3_H
|
||||
#define VEC3_H
|
||||
|
||||
#include <cmath>
|
||||
|
||||
namespace Mask {
|
||||
|
||||
class Vec3 {
|
||||
public:
|
||||
Vec3();
|
||||
Vec3(double x, double y, double z);
|
||||
~Vec3();
|
||||
|
||||
void SetVectorCartesian(double x, double y, double z);
|
||||
void SetVectorSpherical(double r, double theta, double phi);
|
||||
inline double GetX() const { return m_data[0]; }
|
||||
inline double GetY() const { return m_data[1]; }
|
||||
inline double GetZ() const { return m_data[2]; }
|
||||
inline double GetRho() const { return std::sqrt(std::pow(m_data[0], 2.0) + std::pow(m_data[1], 2.0)); }
|
||||
inline double GetR() const { return std::sqrt(std::pow(m_data[0], 2.0) + std::pow(m_data[1], 2.0) + std::pow(m_data[2], 2.0)); }
|
||||
inline double GetTheta() const { return Atan2(GetRho(), GetZ()); }
|
||||
inline double GetPhi() const {
|
||||
double phi = Atan2(GetY(), GetX());
|
||||
if(phi < 0) phi += M_PI*2.0;
|
||||
return phi;
|
||||
}
|
||||
|
||||
inline const double operator[](int index) const { return index>2 || index<0 ? 0.0 : m_data[index]; }
|
||||
inline Vec3& operator=(const Vec3& rhs) { SetVectorCartesian(rhs.GetX(), rhs.GetY(), rhs.GetZ()); return *this; }
|
||||
inline Vec3 operator+(const Vec3& rhs) const { return Vec3(this->GetX()+rhs.GetX(), this->GetY()+rhs.GetY(), this->GetZ()+rhs.GetZ()); }
|
||||
inline Vec3 operator-(const Vec3& rhs) const { return Vec3(this->GetX()-rhs.GetX(), this->GetY()-rhs.GetY(), this->GetZ()-rhs.GetZ()); }
|
||||
|
||||
|
||||
double Dot(const Vec3& rhs) const;
|
||||
Vec3 Cross(const Vec3& rhs) const;
|
||||
|
||||
|
||||
|
||||
private:
|
||||
|
||||
//Use instead of std::atan2. Better control over values close to x=0
|
||||
inline double Atan2(double y, double x) const {
|
||||
if(x != 0.0) return std::atan2(y, x);
|
||||
else if(y > 0.0) return M_PI/2.0;
|
||||
else if(y < 0.0) return -M_PI/2.0;
|
||||
else return 0.0;
|
||||
}
|
||||
|
||||
double m_data[3];
|
||||
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
|
|
@ -1,69 +0,0 @@
|
|||
/*
|
||||
Class which represents a 4-momentum vector. Can perform vector addition, subtraction, dot product
|
||||
and generate a boost vector to its rest frame as well as apply a boost to itself.
|
||||
|
||||
--GWM Dec 2020.
|
||||
*/
|
||||
#ifndef VEC4_H
|
||||
#define VEC4_H
|
||||
|
||||
#include <cmath>
|
||||
|
||||
namespace Mask {
|
||||
|
||||
class Vec4 {
|
||||
public:
|
||||
Vec4();
|
||||
Vec4(double px, double py, double pz, double E);
|
||||
virtual ~Vec4();
|
||||
void SetVectorCartesian(double px, double py, double pz, double E);
|
||||
void SetVectorSpherical(double theta, double phi, double p, double E);
|
||||
|
||||
inline double GetE() const { return m_data[3]; }
|
||||
inline double GetPx() const { return m_data[0]; }
|
||||
inline double GetPy() const { return m_data[1]; }
|
||||
inline double GetPz() const { return m_data[2]; }
|
||||
inline double GetP() const { return std::sqrt(m_data[0]*m_data[0] + m_data[1]*m_data[1] + m_data[2]*m_data[2]); }
|
||||
inline double GetPxy() const { return std::sqrt(m_data[0]*m_data[0] + m_data[1]*m_data[1]); }
|
||||
inline double GetTheta() const { return GetPxy() == 0.0 && GetPz() == 0.0 ? 0.0 : Atan2(GetPxy(), GetPz()); }
|
||||
inline double GetPhi() const {
|
||||
double phi = Atan2(GetPy(), GetPx());
|
||||
if(phi<0) phi += 2.0*M_PI;
|
||||
return GetPx() == 0.0 && GetPy() == 0.0 ? 0.0 : phi;
|
||||
}
|
||||
|
||||
inline double GetInvMass() const { return std::sqrt(GetE()*GetE() - GetP()*GetP()); }
|
||||
inline double GetKE() const { return GetE() - GetInvMass(); }
|
||||
inline const double* GetBoost() const { return &m_boost[0]; }
|
||||
|
||||
void ApplyBoost(const double* boost);
|
||||
|
||||
//Only intended for use in looping access!
|
||||
inline const double operator[] (int index) const { return index>3 || index < 0 ? 0.0 : m_data[index]; }
|
||||
|
||||
inline Vec4& operator=(const Vec4& rhs) { SetVectorCartesian(rhs.GetPx(), rhs.GetPy(), rhs.GetPz(), rhs.GetE()); return *this; }
|
||||
inline Vec4 operator+(const Vec4& rhs) const { return Vec4(rhs.GetPx()+GetPx(), rhs.GetPy()+GetPy(), rhs.GetPz()+GetPz(), rhs.GetE()+GetE()); }
|
||||
inline Vec4 operator-(const Vec4& rhs) const { return Vec4(rhs.GetPx()-GetPx(), rhs.GetPy()-GetPy(), rhs.GetPz()-GetPz(), rhs.GetE()-GetE()); }
|
||||
|
||||
double Dot(const Vec4& rhs) const;
|
||||
Vec4 Cross(const Vec4& rhs) const;
|
||||
|
||||
private:
|
||||
void CalcBoostToCM();
|
||||
|
||||
//use instead of std::atan2. Better controll over x=0
|
||||
inline double Atan2(double y, double x) const {
|
||||
if(x != 0) return std::atan2(y, x);
|
||||
else if( y > 0 ) return M_PI/2.0;
|
||||
else if( y < 0 ) return -M_PI/2.0;
|
||||
else return 0.0;
|
||||
}
|
||||
|
||||
double m_data[4];
|
||||
double m_boost[3];
|
||||
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
|
|
@ -1,243 +0,0 @@
|
|||
/*
|
||||
|
||||
EnergyLoss.cpp
|
||||
Code for calculating the energy loss of a charged, massive particle through an arbitrary medium.
|
||||
Based on code written by D.W. Visser at Yale for the original SPANC. Uses energy loss calulations
|
||||
described by Ziegler in various SRIM textbooks.
|
||||
|
||||
Written by G.W. McCann Aug. 2020
|
||||
|
||||
*/
|
||||
|
||||
#include "Eloss_Tables.h"
|
||||
#include "EnergyLoss.h"
|
||||
#include "KinematicsExceptions.h"
|
||||
#include <iostream>
|
||||
|
||||
namespace Mask {
|
||||
|
||||
EnergyLoss::EnergyLoss() :
|
||||
ZP(-1), AP(-1), MP(-1.0), comp_denom(0)
|
||||
{
|
||||
}
|
||||
|
||||
EnergyLoss::~EnergyLoss() {}
|
||||
|
||||
/*Targets are defined by their atomic number, total number of nucleons, and their stoichiometry within the target compound*/
|
||||
void EnergyLoss::SetTargetComponents(const std::vector<int>& Zt, const std::vector<int>& At, const std::vector<int>& Stoich) {
|
||||
comp_denom = 0;
|
||||
ZT = Zt;
|
||||
AT = At;
|
||||
for(unsigned int i=0; i<Stoich.size(); i++) {
|
||||
comp_denom += Stoich[i];
|
||||
if(ZT[i] > MAX_Z)
|
||||
throw ELossException("Maximum allowed target Z exceeded");
|
||||
}
|
||||
targ_composition.resize(Stoich.size());
|
||||
|
||||
for(unsigned int i=0; i<Stoich.size(); i++)
|
||||
targ_composition[i] = Stoich[i]/comp_denom;
|
||||
}
|
||||
|
||||
/*
|
||||
Returns units of MeV; thickness in ug/cm^2; e_initial in units of MeV
|
||||
Energy loss going through the target
|
||||
*/
|
||||
double EnergyLoss::GetEnergyLoss(int zp, int ap, double e_initial, double thickness) {
|
||||
if( ZP != zp) {
|
||||
ZP = zp;
|
||||
AP = ap;
|
||||
MP = MassLookup::GetInstance().FindMass(ZP, AP)*MEV2U;
|
||||
}
|
||||
|
||||
if(thickness == 0.0 || e_initial == 0.0 || zp == 0)
|
||||
return 0;
|
||||
|
||||
double e_final = e_initial;
|
||||
double x_traversed = 0;
|
||||
double x_step = 0.25*thickness; //initial step in x
|
||||
double e_step = GetTotalStoppingPower(e_final)*x_step/1000.0; //initial step in e
|
||||
double e_threshold = 0.05*e_initial;
|
||||
|
||||
int depth=0;
|
||||
|
||||
bool go = true;
|
||||
while(go) {
|
||||
//If intial guess of step size is too large, shrink until in range
|
||||
if(e_step/e_final > MAX_FRACTIONAL_STEP && depth < MAX_DEPTH) {
|
||||
depth++;
|
||||
x_step *= 0.5;
|
||||
e_step = GetTotalStoppingPower(e_final)*x_step/1000.0;
|
||||
} else if((x_step + x_traversed) >= thickness) { //last chunk
|
||||
go = false;
|
||||
x_step = thickness - x_traversed; //get valid portion of last chunk
|
||||
e_final -= GetTotalStoppingPower(e_final)*x_step/1000.0;
|
||||
if(e_final <= e_threshold)
|
||||
return e_initial;
|
||||
} else if(depth == MAX_DEPTH) {
|
||||
return e_initial;
|
||||
} else {
|
||||
x_traversed += x_step;
|
||||
e_step = GetTotalStoppingPower(e_final)*x_step/1000.0;
|
||||
e_final -= e_step;
|
||||
if(e_final <= e_threshold)
|
||||
return e_initial;
|
||||
}
|
||||
}
|
||||
return e_initial - e_final;
|
||||
}
|
||||
|
||||
/*
|
||||
Returns units of MeV; thickness in ug/cm^2; e_final in units of MeV
|
||||
Energy loss going through the target using energy of particle after traversal
|
||||
*/
|
||||
double EnergyLoss::GetReverseEnergyLoss(int zp, int ap, double e_final, double thickness) {
|
||||
if( ZP != zp) {
|
||||
ZP = zp;
|
||||
AP = ap;
|
||||
MP = MassLookup::GetInstance().FindMass(ZP, AP)*MEV2U;
|
||||
|
||||
}
|
||||
|
||||
double e_initial = e_final;
|
||||
double x_traversed = 0.0;
|
||||
double x_step = 0.25*thickness; //initial step in x
|
||||
double e_step = GetTotalStoppingPower(e_initial)*x_step/1000.0; //initial step in E
|
||||
|
||||
bool go = true;
|
||||
while(go) {
|
||||
if(e_step/e_initial > MAX_FRACTIONAL_STEP) {
|
||||
x_step *= 0.5;
|
||||
e_step = GetTotalStoppingPower(e_initial)*x_step/1000.0;
|
||||
} else if (x_traversed+x_step > thickness) {
|
||||
go = false;
|
||||
x_step = thickness - x_traversed;
|
||||
e_initial += GetTotalStoppingPower(e_initial)*x_step/1000.0;
|
||||
} else {
|
||||
x_traversed += x_step;
|
||||
e_step = GetTotalStoppingPower(e_initial)*x_step/1000.0;
|
||||
e_initial += e_step;
|
||||
}
|
||||
}
|
||||
|
||||
return e_initial-e_final;
|
||||
}
|
||||
|
||||
/*
|
||||
Returns units of keV/(ug/cm^2)
|
||||
Calculates Electronic stopping power by first calculating SE for hydrogen through the target and then using
|
||||
corrections to calculate SE for projectile of interest
|
||||
*/
|
||||
double EnergyLoss::GetElectronicStoppingPower(double energy) {
|
||||
//Wants in units of keV
|
||||
energy *= 1000.0;
|
||||
double e_per_u = energy/MP;
|
||||
std::vector<double> values;
|
||||
if(e_per_u > MAX_H_E_PER_U) {
|
||||
throw ELossException("Exceeded maximum allowed energy per nucleon");
|
||||
} else if (e_per_u > 1000.0) {
|
||||
for(auto& z: ZT)
|
||||
values.push_back(Hydrogen_dEdx_High(e_per_u, energy, z));
|
||||
} else if (e_per_u > 10.0) {
|
||||
for(auto& z: ZT)
|
||||
values.push_back(Hydrogen_dEdx_Med(e_per_u, z));
|
||||
} else if (e_per_u > 0.0) {
|
||||
for(auto& z: ZT)
|
||||
values.push_back(Hydrogen_dEdx_Low(e_per_u, z));
|
||||
} else {
|
||||
throw ELossException("Negative energy per nucleon; given energy: "+std::to_string(energy));
|
||||
}
|
||||
|
||||
if(values.size() == 0)
|
||||
throw ELossException("Size of value array is 0. Unable to iterate over target components");
|
||||
|
||||
if(ZP > 1) { //not hydrogen, need to account for effective charge
|
||||
for(unsigned int i=0; i<values.size(); i++)
|
||||
values[i] *= CalculateEffectiveChargeRatio(e_per_u, ZT[i]);
|
||||
}
|
||||
|
||||
double stopping_total = 0;
|
||||
double conversion_factor = 0;
|
||||
for(unsigned int i=0; i<ZT.size(); i++) {
|
||||
conversion_factor += targ_composition[i]*NATURAL_MASS[ZT[i]];
|
||||
stopping_total += values[i]*targ_composition[i];
|
||||
}
|
||||
stopping_total *= AVOGADRO/conversion_factor;
|
||||
|
||||
return stopping_total;
|
||||
}
|
||||
|
||||
//Returns units of keV/(ug/cm^2)
|
||||
double EnergyLoss::GetNuclearStoppingPower(double energy) {
|
||||
energy *= 1000.0;
|
||||
double stopping_total = 0.0;
|
||||
double sn, x, epsilon, conversion_factor;
|
||||
for(unsigned int i=0; i<ZT.size(); i++) {
|
||||
x = (MP + NATURAL_MASS[ZT[i]]) * std::sqrt(std::pow(ZP, 2.0/3.0) + std::pow(ZT[i], 2.0/3.0));
|
||||
epsilon = 32.53*NATURAL_MASS[ZT[i]]*energy/(ZP*ZT[i]*x);
|
||||
sn = 8.462*(0.5*std::log(1.0+epsilon)/(epsilon+0.10718*std::pow(epsilon, 0.37544)))*ZP*ZT[i]*MP/x;
|
||||
conversion_factor = AVOGADRO/NATURAL_MASS[ZT[i]];
|
||||
stopping_total += sn*conversion_factor*targ_composition[i];
|
||||
}
|
||||
|
||||
return stopping_total;
|
||||
}
|
||||
|
||||
/*Wrapper function for aquiring total stopping (elec + nuc)*/
|
||||
double EnergyLoss::GetTotalStoppingPower(double energy) {
|
||||
if(ZP == 0)
|
||||
return GetNuclearStoppingPower(energy);
|
||||
|
||||
return GetElectronicStoppingPower(energy)+GetNuclearStoppingPower(energy);
|
||||
}
|
||||
|
||||
/*Charge rel to H*/
|
||||
double EnergyLoss::CalculateEffectiveChargeRatio(double e_per_u, int z) {
|
||||
double z_ratio;
|
||||
if(ZP == 2) {
|
||||
double ln_epu = std::log(e_per_u);
|
||||
double gamma = 1.0+(0.007+0.00005*z)*std::exp(-std::pow(7.6-ln_epu,2.0));
|
||||
double alpha = 0.7446 + 0.1429*ln_epu + 0.01562*std::pow(ln_epu, 2.0) - 0.00267*std::pow(ln_epu,3.0)
|
||||
+ 1.338E-6*std::pow(ln_epu,8.0);
|
||||
z_ratio = gamma*(1.0-std::exp(-alpha))*2.0;
|
||||
} else if (ZP == 3) {
|
||||
double ln_epu = std::log(e_per_u);
|
||||
double gamma = 1.0+(0.007+0.00005*z)*std::exp(-std::pow(7.6-ln_epu,2.0));
|
||||
double alpha = 0.7138+0.002797*e_per_u+1.348E-6*std::pow(e_per_u, 2.0);
|
||||
z_ratio = gamma*(1-std::exp(-alpha))*3.0;
|
||||
} else {
|
||||
double B = 0.886*std::pow(e_per_u/25.0, 0.5)/std::pow(ZP, 2.0/3.0);
|
||||
double A = B + 0.0378*std::sin(M_PI/2.0*B);
|
||||
z_ratio = (1.0 - std::exp(-A)*(1.034-0.1777*std::exp(-0.08114*ZP)))*ZP;
|
||||
}
|
||||
return z_ratio*z_ratio; //for stopping power uses ratio sq.
|
||||
}
|
||||
|
||||
double EnergyLoss::Hydrogen_dEdx_Low(double e_per_u, int z) {
|
||||
return std::sqrt(e_per_u)*HYDROGEN_COEFF[z][0];
|
||||
}
|
||||
|
||||
double EnergyLoss::Hydrogen_dEdx_Med(double e_per_u, int z) {
|
||||
double x = HYDROGEN_COEFF[z][1]*std::pow(e_per_u, 0.45);
|
||||
double y = HYDROGEN_COEFF[z][2]/e_per_u * std::log(1.0+HYDROGEN_COEFF[z][3]/e_per_u+HYDROGEN_COEFF[z][4]*e_per_u);
|
||||
return x*y/(x+y);
|
||||
}
|
||||
|
||||
double EnergyLoss::Hydrogen_dEdx_High(double e_per_u, double energy, int z) {
|
||||
energy /= 1000.0; //back to MeV for ease of beta calc
|
||||
double beta_sq = energy * (energy+2.0*MP/MEV2U)/std::pow(energy+MP/MEV2U, 2.0);
|
||||
double alpha = HYDROGEN_COEFF[z][5]/beta_sq;
|
||||
double epsilon = HYDROGEN_COEFF[z][6]*beta_sq/(1.0-beta_sq) - beta_sq - HYDROGEN_COEFF[z][7];
|
||||
for(int i=1; i<5; i++)
|
||||
epsilon += HYDROGEN_COEFF[z][7+i]*std::pow(std::log(e_per_u), i);
|
||||
|
||||
return alpha * std::log(epsilon);
|
||||
}
|
||||
|
||||
//unimplemented
|
||||
double EnergyLoss::GetRange(double energy) {
|
||||
std::cerr<<"EnergyLoss::GetRange is not implemented! Returning 0.0"<<std::endl;
|
||||
return 0.0;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -1,364 +0,0 @@
|
|||
#include "MaskFile.h"
|
||||
#include <iostream>
|
||||
#include <iomanip>
|
||||
#include <sstream>
|
||||
|
||||
/*
|
||||
|
||||
FORMAT
|
||||
|
||||
HEADER (contains rxntype & nuclei numbers & beam kinetic energy) (64 bits, 8 bytes)
|
||||
NSAMPLES(32bit) RXNTYPE(32bit)
|
||||
end HEADER
|
||||
|
||||
There are NSAMPLES * (number of saved nuclei) data in the file. The number of nuclei saved is related to the
|
||||
RXNTYPE. All nuclei (target, projectile, ejectile, residual, break1, etc...) are saved. A datum is as follows:
|
||||
|
||||
DATUM (contains kinematic data for a nucleus) (384 bits, 48 bytes)
|
||||
Z(32bit) A(32bit) DETECTFLAG(32bit) E(64bit) KE(64bit) P(64bit) THETA(64bit) PHI(64bit)
|
||||
end DATUM
|
||||
|
||||
|
||||
*/
|
||||
|
||||
namespace Mask {
|
||||
|
||||
MaskFile::MaskFile() :
|
||||
file_type(MaskFile::FileType::none), filename(""), buffer_position(0), buffer_end(0), data_size(0), buffersize_bytes(0), file()
|
||||
{
|
||||
}
|
||||
|
||||
MaskFile::MaskFile(const std::string& name, MaskFile::FileType type) :
|
||||
file_type(type), filename(name), buffer_position(0), buffer_end(0), data_size(0), buffersize_bytes(0), file()
|
||||
{
|
||||
Open(filename, type);
|
||||
}
|
||||
|
||||
bool MaskFile::Open(const std::string& name, MaskFile::FileType type) {
|
||||
if(IsOpen()) {
|
||||
std::cerr<<"Attempted to open file that is already open!"<<std::endl;
|
||||
return false;
|
||||
}
|
||||
|
||||
if(type == FileType::read) {
|
||||
file.open(name, std::ios::in);
|
||||
buffer_position = 0;
|
||||
} else if (type == FileType::write) {
|
||||
file.open(name, std::ios::out | std::ios::trunc);
|
||||
} else if (type == FileType::append) {
|
||||
file.open(name, std::ios::out | std::ios::app);
|
||||
} else {
|
||||
std::cerr<<"Invalid FileType at MaskFile::Open()"<<std::endl;
|
||||
return IsOpen();
|
||||
}
|
||||
|
||||
|
||||
return IsOpen();
|
||||
}
|
||||
|
||||
void MaskFile::Close() {
|
||||
//Final flush (if necessary)
|
||||
if(buffer_position > 0 && buffer_position < buffersize_bytes && (file_type == FileType::write || file_type == FileType::append)) {
|
||||
file.write(data_buffer.data(), buffer_position);
|
||||
}
|
||||
file.close();
|
||||
}
|
||||
|
||||
void MaskFile::WriteHeader(RxnType rxn_type, int nsamples) {
|
||||
|
||||
m_rxn_type = rxn_type;
|
||||
switch(rxn_type)
|
||||
{
|
||||
case RxnType::PureDecay :
|
||||
{
|
||||
data_size = 3 * ( 5 * double_size + 2 * int_size + bool_size);
|
||||
break;
|
||||
}
|
||||
case RxnType::OneStepRxn :
|
||||
{
|
||||
data_size = 4 * ( 5 * double_size + 2 * int_size + bool_size);
|
||||
break;
|
||||
}
|
||||
case RxnType::TwoStepRxn :
|
||||
{
|
||||
data_size = 6 * ( 5 * double_size + 2 * int_size + bool_size);
|
||||
break;
|
||||
}
|
||||
case RxnType::ThreeStepRxn :
|
||||
{
|
||||
data_size = 8 * ( 5 * double_size + 2 * int_size + bool_size);
|
||||
break;
|
||||
}
|
||||
case RxnType::None :
|
||||
{
|
||||
std::cerr<<"Invalid RxnType at MaskFile::WriteHeader!"<<std::endl;
|
||||
return;
|
||||
}
|
||||
}
|
||||
|
||||
buffersize_bytes = buffersize * data_size; //buffersize_bytes = # of events * size of an event
|
||||
|
||||
data_buffer.resize(buffersize_bytes);
|
||||
|
||||
uint32_t type_value = GetIntFromRxnType(m_rxn_type);
|
||||
file.write((char*) &nsamples, int_size);
|
||||
file.write((char*) &type_value, int_size);
|
||||
}
|
||||
|
||||
MaskFileHeader MaskFile::ReadHeader() {
|
||||
MaskFileHeader header;
|
||||
std::vector<char> temp_buffer(4);
|
||||
file.read(temp_buffer.data(), 4);
|
||||
header.nsamples = *(int*)(&temp_buffer[0]);
|
||||
file.read(temp_buffer.data(), 4);
|
||||
uint32_t type_value = *(uint32_t*)(&temp_buffer[0]);
|
||||
m_rxn_type = GetRxnTypeFromInt(type_value);
|
||||
|
||||
switch(m_rxn_type)
|
||||
{
|
||||
case RxnType::PureDecay:
|
||||
{
|
||||
data_size = 3 * ( 5 * double_size + 2 * int_size + bool_size);
|
||||
break;
|
||||
}
|
||||
case RxnType::OneStepRxn:
|
||||
{
|
||||
data_size = 4 * ( 5 * double_size + 2 * int_size + bool_size);
|
||||
break;
|
||||
}
|
||||
case RxnType::TwoStepRxn:
|
||||
{
|
||||
data_size = 6 * ( 5 * double_size + 2 * int_size + bool_size);
|
||||
break;
|
||||
}
|
||||
case RxnType::ThreeStepRxn:
|
||||
{
|
||||
data_size = 8 * ( 5 * double_size + 2 * int_size + bool_size);
|
||||
break;
|
||||
}
|
||||
case RxnType::None:
|
||||
{
|
||||
std::cerr<<"Unexpected reaction type at MaskFile::ReadHeader (rxn type = "<<GetIntFromRxnType(m_rxn_type)<<")! Returning"<<std::endl;
|
||||
return header;
|
||||
}
|
||||
}
|
||||
|
||||
buffersize_bytes = buffersize * data_size;//buffersize_bytes = size of a datum * # of events
|
||||
|
||||
header.rxn_type = m_rxn_type;
|
||||
|
||||
data_buffer.resize(buffersize_bytes);
|
||||
|
||||
return header;
|
||||
}
|
||||
|
||||
void MaskFile::WriteData(const std::vector<Nucleus>& data) {
|
||||
|
||||
char* data_pointer;
|
||||
double datum;
|
||||
int number;
|
||||
bool flag;
|
||||
std::size_t j;
|
||||
for(unsigned int i=0; i<data.size(); i++) {
|
||||
number = data[i].GetZ();
|
||||
data_pointer = (char*) &number;
|
||||
for(j=0; j<int_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
number = data[i].GetA();
|
||||
data_pointer = (char*) &number;
|
||||
for(j=0; j<int_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
flag = data[i].IsDetected();
|
||||
data_pointer = (char*) &flag;
|
||||
for(j=0; j<bool_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data[i].GetE();
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data[i].GetKE();
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data[i].GetP();
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data[i].GetTheta();
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data[i].GetPhi();
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
}
|
||||
|
||||
//Flush the buffer when it is full, and reset the position.
|
||||
if(buffer_position == buffersize_bytes) {
|
||||
file.write(data_buffer.data(), data_buffer.size());
|
||||
buffer_position = 0;
|
||||
}
|
||||
}
|
||||
|
||||
void MaskFile::WriteData(const MaskFileData& data) {
|
||||
|
||||
char* data_pointer;
|
||||
double datum;
|
||||
int number;
|
||||
bool flag;
|
||||
std::size_t j;
|
||||
for(unsigned int i=0; i<data.Z.size(); i++) {
|
||||
number = data.Z[i];
|
||||
data_pointer = (char*) &number;
|
||||
for(j=0; j<int_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
number = data.A[i];
|
||||
data_pointer = (char*) &number;
|
||||
for(j=0; j<int_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
flag = data.detect_flag[i];
|
||||
data_pointer = (char*) &flag;
|
||||
for(j=0; j<bool_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data.E[i];
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data.KE[i];
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data.p[i];
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data.theta[i];
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
|
||||
datum = data.phi[i];
|
||||
data_pointer = (char*) &datum;
|
||||
for(j=0; j<double_size; j++) {
|
||||
data_buffer[buffer_position] = *(data_pointer + j);
|
||||
buffer_position++;
|
||||
}
|
||||
}
|
||||
|
||||
//Flush the buffer when it is full, and reset the position.
|
||||
if(buffer_position == buffersize_bytes) {
|
||||
file.write(data_buffer.data(), data_buffer.size());
|
||||
buffer_position = 0;
|
||||
}
|
||||
}
|
||||
|
||||
/*
|
||||
Read data from the buffer and submit it to the client side as a MaskFileData struct.
|
||||
When file reaches the end of the file (no more data to read), an empty MaskFileData with
|
||||
eof == true is sent out signaling that the file is finished.
|
||||
|
||||
Should be used like
|
||||
|
||||
Mask::MaskFile input(file, Mask::MaskFile::FileType::read);
|
||||
Mask::MaskFileHeader header = input.ReadHeader();
|
||||
Mask::MaskFileData data;
|
||||
while(true) {
|
||||
data = input.ReadData();
|
||||
if(data.eof) break;
|
||||
|
||||
Do some stuff...
|
||||
|
||||
}
|
||||
input.Close();
|
||||
|
||||
Good luck
|
||||
*/
|
||||
MaskFileData MaskFile::ReadData() {
|
||||
|
||||
MaskFileData data;
|
||||
|
||||
//Fill the buffer when needed, reset the positon, and find the end
|
||||
if(buffer_position == data_buffer.size() || buffer_position == buffer_end) {
|
||||
file.read(data_buffer.data(), buffersize_bytes);
|
||||
buffer_position = 0;
|
||||
buffer_end = file.gcount();
|
||||
if(buffer_end == 0 && file.eof()) {
|
||||
data.eof = true;
|
||||
return data;
|
||||
}
|
||||
}
|
||||
|
||||
uint64_t local_end = buffer_position + data_size;
|
||||
if(local_end > buffer_end) {
|
||||
std::cerr<<"Attempting to read past end of file at MaskFile::ReadData! Returning empty"<<std::endl;
|
||||
data.eof = true;
|
||||
return data;
|
||||
}
|
||||
|
||||
while(buffer_position < local_end) {
|
||||
data.Z.push_back(*(int*)(&data_buffer[buffer_position]));
|
||||
buffer_position += int_size;
|
||||
data.A.push_back(*(int*)(&data_buffer[buffer_position]));
|
||||
buffer_position += int_size;
|
||||
data.detect_flag.push_back(*(bool*)(&data_buffer[buffer_position]));
|
||||
buffer_position += bool_size;
|
||||
data.E.push_back(*(double*)(&data_buffer[buffer_position]));
|
||||
buffer_position += double_size;
|
||||
data.KE.push_back(*(double*)(&data_buffer[buffer_position]));
|
||||
buffer_position += double_size;
|
||||
data.p.push_back(*(double*)(&data_buffer[buffer_position]));
|
||||
buffer_position += double_size;
|
||||
data.theta.push_back(*(double*)(&data_buffer[buffer_position]));
|
||||
buffer_position += double_size;
|
||||
data.phi.push_back(*(double*)(&data_buffer[buffer_position]));
|
||||
buffer_position += double_size;
|
||||
}
|
||||
|
||||
return data;
|
||||
}
|
||||
|
||||
};
|
||||
|
|
@ -1,47 +0,0 @@
|
|||
/*
|
||||
Nucleus.cpp
|
||||
Nucleus is a derived class of Vec4. A nucleus is the kinematics is essentially a 4 vector with the
|
||||
additional properties of the number of total nucleons (A), the number of protons (Z), a ground state mass,
|
||||
an exctitation energy, and an isotopic symbol.
|
||||
|
||||
--GWM Jan 2021
|
||||
*/
|
||||
#include "Nucleus.h"
|
||||
#include "MassLookup.h"
|
||||
|
||||
namespace Mask {
|
||||
|
||||
Nucleus::Nucleus () :
|
||||
Vec4(), m_z(0), m_a(0), m_gs_mass(0), m_theta_cm(0), m_symbol(""), m_detectFlag(false)
|
||||
{
|
||||
}
|
||||
|
||||
Nucleus::Nucleus(int Z, int A) :
|
||||
Vec4(), m_z(Z), m_a(A), m_theta_cm(0), m_detectFlag(false)
|
||||
{
|
||||
m_gs_mass = MassLookup::GetInstance().FindMass(Z, A);
|
||||
m_symbol = MassLookup::GetInstance().FindSymbol(Z, A);
|
||||
SetVectorCartesian(0,0,0,m_gs_mass); //by defualt a nucleus has mass given by the g.s.
|
||||
}
|
||||
|
||||
Nucleus::Nucleus(int Z, int A, double px, double py, double pz, double E) :
|
||||
Vec4(px, py, pz, E), m_z(Z), m_a(A)
|
||||
{
|
||||
m_gs_mass = MassLookup::GetInstance().FindMass(Z, A);
|
||||
m_symbol = MassLookup::GetInstance().FindSymbol(Z, A);
|
||||
}
|
||||
|
||||
Nucleus::~Nucleus() {}
|
||||
|
||||
bool Nucleus::SetIsotope(int Z, int A) {
|
||||
if(Z>A) return false;
|
||||
|
||||
m_z = Z;
|
||||
m_a = A;
|
||||
m_gs_mass = MassLookup::GetInstance().FindMass(Z, A);
|
||||
m_symbol = MassLookup::GetInstance().FindSymbol(Z, A);
|
||||
SetVectorCartesian(0,0,0,m_gs_mass);
|
||||
return true;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -1,71 +0,0 @@
|
|||
/*
|
||||
Classes which define rotations about the x, y, and z axes. Using these,
|
||||
any arbitrary orientation can be described. Methods implemented for vector multiplication
|
||||
as well as generating the inverse of the rotation.
|
||||
*/
|
||||
#include "Rotation.h"
|
||||
|
||||
namespace Mask {
|
||||
|
||||
XRotation::XRotation() :
|
||||
m_angle(0)
|
||||
{
|
||||
GenerateMatrix();
|
||||
}
|
||||
|
||||
XRotation::XRotation(double angle) :
|
||||
m_angle(angle)
|
||||
{
|
||||
GenerateMatrix();
|
||||
}
|
||||
|
||||
XRotation::~XRotation() {}
|
||||
|
||||
void XRotation::GenerateMatrix() {
|
||||
m_matrix[0][0] = 1.0; m_matrix[0][1] = 0.0; m_matrix[0][2] = 0.0;
|
||||
m_matrix[1][0] = 0.0; m_matrix[1][1] = std::cos(m_angle); m_matrix[1][2] = -std::sin(m_angle);
|
||||
m_matrix[2][0] = 0.0; m_matrix[2][1] = std::sin(m_angle); m_matrix[2][2] = std::cos(m_angle);
|
||||
}
|
||||
|
||||
YRotation::YRotation() :
|
||||
m_angle(0)
|
||||
{
|
||||
GenerateMatrix();
|
||||
}
|
||||
|
||||
YRotation::YRotation(double angle) :
|
||||
m_angle(angle)
|
||||
{
|
||||
GenerateMatrix();
|
||||
}
|
||||
|
||||
YRotation::~YRotation() {}
|
||||
|
||||
void YRotation::GenerateMatrix() {
|
||||
m_matrix[0][0] = std::cos(m_angle); m_matrix[0][1] = 0.0; m_matrix[0][2] = -std::sin(m_angle);
|
||||
m_matrix[1][0] = 0.0; m_matrix[1][1] = 1.0; m_matrix[1][2] = 0.0;
|
||||
m_matrix[2][0] = std::sin(m_angle); m_matrix[2][1] = 0.0; m_matrix[2][2] = std::cos(m_angle);
|
||||
}
|
||||
|
||||
|
||||
ZRotation::ZRotation() :
|
||||
m_angle(0)
|
||||
{
|
||||
GenerateMatrix();
|
||||
}
|
||||
|
||||
ZRotation::ZRotation(double angle) :
|
||||
m_angle(angle)
|
||||
{
|
||||
GenerateMatrix();
|
||||
}
|
||||
|
||||
ZRotation::~ZRotation() {}
|
||||
|
||||
void ZRotation::GenerateMatrix() {
|
||||
m_matrix[0][0] = std::cos(m_angle); m_matrix[0][1] = -std::sin(m_angle); m_matrix[0][2] = 0.0;
|
||||
m_matrix[1][0] = std::sin(m_angle); m_matrix[1][1] = std::cos(m_angle); m_matrix[1][2] = 0.0;
|
||||
m_matrix[2][0] = 0.0; m_matrix[2][1] = 0.0; m_matrix[2][2] = 1.0;
|
||||
}
|
||||
|
||||
};
|
||||
|
|
@ -1,48 +0,0 @@
|
|||
/*
|
||||
Class to represent a 3-space vector in both cartesian and spherical coordinates. Can perform vector
|
||||
addition, subtraction, and dot product.
|
||||
|
||||
--GWM Dec 2020
|
||||
*/
|
||||
#include "Vec3.h"
|
||||
|
||||
namespace Mask {
|
||||
|
||||
Vec3::Vec3() {
|
||||
m_data[0] = 0.;
|
||||
m_data[1] = 0.;
|
||||
m_data[2] = 0.;
|
||||
}
|
||||
|
||||
Vec3::Vec3(double x, double y, double z) {
|
||||
m_data[0] = x;
|
||||
m_data[1] = y;
|
||||
m_data[2] = z;
|
||||
}
|
||||
|
||||
Vec3::~Vec3() {}
|
||||
|
||||
void Vec3::SetVectorCartesian(double x, double y, double z) {
|
||||
m_data[0] = x;
|
||||
m_data[1] = y;
|
||||
m_data[2] = z;
|
||||
}
|
||||
|
||||
void Vec3::SetVectorSpherical(double r, double theta, double phi) {
|
||||
m_data[0] = r*std::cos(phi)*std::sin(theta);
|
||||
m_data[1] = r*std::sin(phi)*std::sin(theta);
|
||||
m_data[2] = r*std::cos(theta);
|
||||
}
|
||||
|
||||
double Vec3::Dot(const Vec3& rhs) const {
|
||||
return GetX()*rhs.GetX() + GetY()*rhs.GetY() + GetZ()*rhs.GetZ();
|
||||
}
|
||||
|
||||
Vec3 Vec3::Cross(const Vec3& rhs) const {
|
||||
double x = GetY()*rhs.GetZ() - GetZ()*rhs.GetY();
|
||||
double y = GetZ()*rhs.GetX() - GetX()*rhs.GetZ();
|
||||
double z = GetX()*rhs.GetY() - GetY()*rhs.GetX();
|
||||
return Vec3(x,y,z);
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -1,73 +0,0 @@
|
|||
/*
|
||||
Class which represents a 4-momentum vector. Can perform vector addition, subtraction, dot product
|
||||
and generate a boost vector to its rest frame as well as apply a boost to itself.
|
||||
|
||||
--GWM Dec 2020.
|
||||
NOTE: uses (-,-,-,+) metric (same as ROOT convention)
|
||||
*/
|
||||
#include "Vec4.h"
|
||||
|
||||
|
||||
namespace Mask {
|
||||
|
||||
Vec4::Vec4() {
|
||||
for(auto& val: m_data)
|
||||
val = 0.0;
|
||||
for(auto& val: m_boost)
|
||||
val = 0.0;
|
||||
}
|
||||
|
||||
Vec4::Vec4(double px, double py, double pz, double E) {
|
||||
m_data[0] = px;
|
||||
m_data[1] = py;
|
||||
m_data[2] = pz;
|
||||
m_data[3] = E;
|
||||
CalcBoostToCM();
|
||||
}
|
||||
|
||||
Vec4::~Vec4() {}
|
||||
|
||||
void Vec4::SetVectorCartesian(double px, double py, double pz, double E) {
|
||||
m_data[0] = px;
|
||||
m_data[1] = py;
|
||||
m_data[2] = pz;
|
||||
m_data[3] = E;
|
||||
|
||||
CalcBoostToCM();
|
||||
}
|
||||
|
||||
void Vec4::SetVectorSpherical(double theta, double phi, double p, double E) {
|
||||
m_data[0] = p*cos(phi)*sin(theta);
|
||||
m_data[1] = p*sin(phi)*sin(theta);
|
||||
m_data[2] = p*cos(theta);
|
||||
m_data[3] = E;
|
||||
CalcBoostToCM();
|
||||
}
|
||||
|
||||
void Vec4::CalcBoostToCM() {
|
||||
m_boost[0] = m_data[0]/m_data[3];
|
||||
m_boost[1] = m_data[1]/m_data[3];
|
||||
m_boost[2] = m_data[2]/m_data[3];
|
||||
}
|
||||
|
||||
void Vec4::ApplyBoost(const double* beta) {
|
||||
double beta2 = beta[0]*beta[0] + beta[1]*beta[1] + beta[2]*beta[2];
|
||||
double gamma = 1.0/std::sqrt(1.0 - beta2);
|
||||
double bdotp = beta[0]*m_data[0] + beta[1]*m_data[1] + beta[2]*m_data[2];
|
||||
double gfactor = beta2>0.0 ? (gamma - 1.0)/beta2 : 0.0;
|
||||
|
||||
SetVectorCartesian(GetPx()+gfactor*bdotp*beta[0]+gamma*beta[0]*GetE(),
|
||||
GetPy()+gfactor*bdotp*beta[1]+gamma*beta[1]*GetE(),
|
||||
GetPz()+gfactor*bdotp*beta[2]+gamma*beta[2]*GetE(),
|
||||
gamma*(GetE() + bdotp));
|
||||
}
|
||||
|
||||
double Vec4::Dot(const Vec4& rhs) const {
|
||||
return GetE()*rhs.GetE() - GetPx()*rhs.GetPx() - GetPy()*rhs.GetPy() - GetPz()*rhs.GetPz();
|
||||
}
|
||||
|
||||
Vec4 Vec4::Cross(const Vec4& rhs) const {
|
||||
return Vec4();
|
||||
}
|
||||
|
||||
}
|
||||
3
src/Plotters/Python/.gitignore
vendored
3
src/Plotters/Python/.gitignore
vendored
|
|
@ -1,3 +0,0 @@
|
|||
__pycache__
|
||||
|
||||
!.gitignore
|
||||
|
|
@ -1,80 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
|
||||
import numpy as np
|
||||
import struct
|
||||
|
||||
class MaskFileData :
|
||||
def __init__(self, n):
|
||||
self.Z = np.zeros(n, dtype=int)
|
||||
self.A = np.zeros(n, dtype=int)
|
||||
self.dFlag = np.zeros(n, dtype=bool)
|
||||
self.E = np.zeros(n)
|
||||
self.KE = np.zeros(n)
|
||||
self.p = np.zeros(n)
|
||||
self.theta = np.zeros(n)
|
||||
self.phi = np.zeros(n)
|
||||
|
||||
class MaskFile:
|
||||
int_size = 4
|
||||
double_size = 8
|
||||
bool_size = 1
|
||||
|
||||
def __init__(self, filename=""):
|
||||
self.eofFlag = False
|
||||
self.openFlag = False
|
||||
if filename != "" :
|
||||
self.Open(filename)
|
||||
|
||||
def Open(self, filename):
|
||||
self.filename = filename
|
||||
self.file = open(self.filename, mode="rb")
|
||||
if self.file.closed :
|
||||
self.openFlag = False
|
||||
else:
|
||||
self.openFlag = True
|
||||
|
||||
def ReadHeader(self):
|
||||
data = self.file.read(2*self.int_size)
|
||||
|
||||
(self.nsamples, self.rxntype) = struct.unpack("ii", data)
|
||||
self.datasize = (5*self.double_size+2*self.int_size+self.bool_size)
|
||||
self.datastr = "=ii?ddddd"
|
||||
|
||||
if self.rxntype == 0:
|
||||
self.N_nuclei = 3
|
||||
elif self.rxntype == 1:
|
||||
self.N_nuclei = 4
|
||||
elif self.rxntype == 2:
|
||||
self.N_nuclei = 6
|
||||
elif self.rxntype == 3:
|
||||
self.N_nuclei = 8
|
||||
|
||||
def ReadData(self):
|
||||
data = MaskFileData(self.N_nuclei)
|
||||
for i in range(self.N_nuclei):
|
||||
buffer = self.file.read(self.datasize)
|
||||
(data.Z[i], data.A[i], data.dFlag[i], data.E[i], data.KE[i], data.p[i], data.theta[i], data.phi[i]) = struct.unpack(self.datastr, buffer)
|
||||
if buffer == "":
|
||||
self.eofFlag = True
|
||||
|
||||
return data
|
||||
|
||||
def Close(self):
|
||||
self.file.close()
|
||||
|
||||
def main() :
|
||||
file = MaskFile(filename="/data1/gwm17/mask_tests/7Bedp_870keV_beam_50CD2.mask")
|
||||
file.ReadHeader()
|
||||
print("samples: ", file.nsamples, "rxntype:", file.rxntype, "datasize:", file.datasize)
|
||||
count=0
|
||||
for i in range(file.nsamples):
|
||||
file.ReadData()
|
||||
count += 1
|
||||
|
||||
print("count:",count)
|
||||
print("eofFlag:",file.eofFlag)
|
||||
|
||||
file.Close()
|
||||
|
||||
if __name__ == '__main__':
|
||||
main()
|
||||
|
|
@ -1,70 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
|
||||
import numpy as np
|
||||
import requests
|
||||
import lxml.html as xhtml
|
||||
|
||||
|
||||
class MassTable:
|
||||
def __init__(self):
|
||||
file = open("./etc/mass.txt","r")
|
||||
self.mtable = {}
|
||||
u2mev = 931.4940954
|
||||
me = 0.000548579909 #amu
|
||||
self.etable = {}
|
||||
|
||||
line = file.readline()
|
||||
line = file.readline()
|
||||
|
||||
for line in file:
|
||||
entries = line.split()
|
||||
n = entries[0]
|
||||
z = entries[1]
|
||||
a = entries[2]
|
||||
element = entries[3]
|
||||
massBig = float(entries[4])
|
||||
massSmall = float(entries[5])
|
||||
|
||||
key = '('+z+','+a+')'
|
||||
value = ((massBig+massSmall*1e-6) - float(z)*me)*u2mev
|
||||
self.mtable[key] = value
|
||||
self.etable[key] = element
|
||||
file.close()
|
||||
|
||||
def GetMass(self, z, a):
|
||||
key = '('+str(z)+','+str(a)+')'
|
||||
if key in self.mtable:
|
||||
return self.mtable[key]
|
||||
else:
|
||||
return 0
|
||||
|
||||
def GetSymbol(self, z, a):
|
||||
key = '('+str(z)+','+str(a)+')'
|
||||
if key in self.etable:
|
||||
return str(a)+self.etable[key]
|
||||
else:
|
||||
return 'none'
|
||||
|
||||
Masses = MassTable()
|
||||
|
||||
def GetExcitations(symbol):
|
||||
levels = np.array(np.empty(0))
|
||||
text = ''
|
||||
|
||||
site = requests.get("https://www.nndc.bnl.gov/nudat2/getdatasetClassic.jsp?nucleus="+symbol+"&unc=nds")
|
||||
contents = xhtml.fromstring(site.content)
|
||||
tables = contents.xpath("//table")
|
||||
rows = tables[2].xpath("./tr")
|
||||
for row in rows[1:-2]:
|
||||
entries = row.xpath("./td")
|
||||
if len(entries) != 0:
|
||||
entry = entries[0]
|
||||
data = entry.xpath("./a")
|
||||
if len(data) == 0:
|
||||
text = entry.text
|
||||
else:
|
||||
text = data[0].text
|
||||
text = text.replace('?', '')
|
||||
text = text.replace('\xa0\xa0≈','')
|
||||
levels = np.append(levels, float(text)/1000.0)
|
||||
return levels
|
||||
|
|
@ -1,106 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
|
||||
import numpy as np
|
||||
from NucData import Masses
|
||||
|
||||
class Nucleus:
|
||||
deg2rad = np.pi/180.0
|
||||
def __init__(self, Z=0, A=0):
|
||||
self.Z = Z
|
||||
self.A = A
|
||||
if Z != 0 and A != 0:
|
||||
self.gsMass = Masses.GetMass(self.Z, self.A)
|
||||
self.vec4 = np.zeros(4)
|
||||
self.symbol = Masses.GetSymbol(self.Z, self.A)
|
||||
self.vec4[3] = self.gsMass
|
||||
|
||||
def SetIsotope(self, Z, A):
|
||||
self.gsMass = Masses.GetMass(Z, A)
|
||||
self.symbol = Masses.GetSymbol(Z, A)
|
||||
self.Z = Z
|
||||
self.A = A
|
||||
self.vec4 = np.zeros(4)
|
||||
self.vec4[3] = self.gsMass
|
||||
|
||||
def SetVectorCart(self, px, py, pz, E):
|
||||
self.vec4[0] = px
|
||||
self.vec4[1] = py
|
||||
self.vec4[2] = pz
|
||||
self.vec4[3] = E
|
||||
|
||||
def SetVectorSpher(self, theta, phi, p, E):
|
||||
self.vec4[0] = p*np.sin(theta)*np.cos(phi)
|
||||
self.vec4[1] = p*np.sin(theta)*np.sin(phi)
|
||||
self.vec4[2] = p*np.cos(theta)
|
||||
self.vec4[3] = E
|
||||
|
||||
def __add__(self, other):
|
||||
vec4 = self.vec4 + other.vec4
|
||||
newNuc = Nucleus(self.Z + other.Z, self.A + other.A)
|
||||
newNuc.SetVectorCart(vec4[0], vec4[1], vec4[2], vec4[3])
|
||||
return newNuc
|
||||
|
||||
def __sub__(self, other):
|
||||
vec4 = self.vec4 - other.vec4
|
||||
newNuc = Nucleus(self.Z - other.Z, self.A - other.A)
|
||||
newNuc.SetVectorCart(vec4[0], vec4[1], vec4[2], vec4[3])
|
||||
return newNuc
|
||||
|
||||
def __str__(self):
|
||||
return "Nucleus({0},{1}) with 4-vector({2})".format(self.Z, self.A, self.vec4)
|
||||
|
||||
def GetP(self):
|
||||
return np.sqrt(self.vec4[0]**2.0 + self.vec4[1]**2.0 + self.vec4[2]**2.0)
|
||||
|
||||
def GetInvMass(self):
|
||||
return np.sqrt(self.vec4[3]**2.0 - self.GetP()**2.0)
|
||||
|
||||
def GetKE(self):
|
||||
return self.vec4[3] - self.GetInvMass()
|
||||
|
||||
def GetTheta(self):
|
||||
return np.arccos(self.vec4[2]/self.GetP())
|
||||
|
||||
def GetPhi(self):
|
||||
result = np.arctan2(self.vec4[1], self.vec4[0])
|
||||
if result < 0.0:
|
||||
result += 2.0*np.pi
|
||||
return result
|
||||
|
||||
def GetExcitation(self):
|
||||
return self.GetInvMass() - self.gsMass
|
||||
|
||||
def GetBoostToCMFrame(self):
|
||||
boost_vec = np.zeros(3)
|
||||
boost_vec[0] = self.vec4[0]/self.vec4[3]
|
||||
boost_vec[1] = self.vec4[1]/self.vec4[3]
|
||||
boost_vec[2] = self.vec4[2]/self.vec4[3]
|
||||
return boost_vec
|
||||
|
||||
def ApplyBoost(self, boost_vec):
|
||||
beta2 = np.linalg.norm(boost_vec)**2.0
|
||||
gamma = 1.0/np.sqrt(1.0 - beta2)
|
||||
bdotp = boost_vec[0]*self.vec4[0] + boost_vec[1]*self.vec4[1] + boost_vec[2]*self.vec4[2]
|
||||
gfactor = (gamma-1.0)/beta2 if beta2 > 0.0 else 0.0
|
||||
|
||||
px = self.vec4[0]+gfactor*bdotp*boost_vec[0]+gamma*boost_vec[0]*self.vec4[3]
|
||||
py = self.vec4[1]+gfactor*bdotp*boost_vec[1]+gamma*boost_vec[1]*self.vec4[3]
|
||||
pz = self.vec4[2]+gfactor*bdotp*boost_vec[2]+gamma*boost_vec[2]*self.vec4[3]
|
||||
E = gamma*(self.vec4[3] + bdotp)
|
||||
|
||||
self.SetVectorCart(px, py, pz, E);
|
||||
|
||||
|
||||
def main():
|
||||
nuc = Nucleus(1,1)
|
||||
print("First",nuc)
|
||||
nuc2 = Nucleus(2,4)
|
||||
print("Second", nuc2)
|
||||
result = nuc + nuc2
|
||||
print("Addition", result)
|
||||
result2 = nuc2 - nuc
|
||||
print("Subtraction", result2)
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
main()
|
||||
|
|
@ -1,135 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
|
||||
import numpy as np
|
||||
import matplotlib.pyplot as plt
|
||||
from Nucleus import Nucleus
|
||||
from MaskFile import MaskFile, MaskFileData
|
||||
from NucData import Masses
|
||||
import pickle
|
||||
import sys
|
||||
|
||||
def PlotData(inputname, outputname):
|
||||
rad2deg = 180.0/np.pi
|
||||
|
||||
datafile = MaskFile(inputname)
|
||||
datafile.ReadHeader()
|
||||
|
||||
print("MaskFile opened -- rxntype:", datafile.rxntype, "number of samples:", datafile.nsamples)
|
||||
|
||||
data = MaskFileData(datafile.N_nuclei)
|
||||
|
||||
ke = np.zeros((datafile.N_nuclei, datafile.nsamples))
|
||||
ke_d = np.zeros((datafile.N_nuclei, datafile.nsamples))
|
||||
theta = np.zeros((datafile.N_nuclei, datafile.nsamples))
|
||||
theta_d = np.zeros((datafile.N_nuclei, datafile.nsamples))
|
||||
phi = np.zeros((datafile.N_nuclei, datafile.nsamples))
|
||||
phi_d = np.zeros((datafile.N_nuclei, datafile.nsamples))
|
||||
detect_mask = np.ones((datafile.N_nuclei, datafile.nsamples), dtype=bool)
|
||||
names = []
|
||||
for i in range(datafile.N_nuclei):
|
||||
names.append(" ")
|
||||
|
||||
nuc = Nucleus()
|
||||
|
||||
for i in range(datafile.nsamples):
|
||||
data = datafile.ReadData()
|
||||
|
||||
if i == 0:
|
||||
for j in range(datafile.N_nuclei):
|
||||
names[j] = Masses.GetSymbol(data.Z[j], data.A[j])
|
||||
|
||||
for j in range(datafile.N_nuclei):
|
||||
nuc.SetIsotope(data.Z[j], data.A[j])
|
||||
nuc.SetVectorSpher(data.theta[j], data.phi[j], data.p[j], data.E[j])
|
||||
|
||||
ke[j][i] = nuc.GetKE()
|
||||
theta[j][i] = data.theta[j]*rad2deg
|
||||
phi[j][i] = data.phi[j]*rad2deg
|
||||
if data.dFlag[j] == True:
|
||||
ke_d[j][i] = data.KE[j]
|
||||
theta_d[j][i] = data.theta[j]*rad2deg
|
||||
phi_d[j][i] = data.phi[j]*rad2deg
|
||||
else:
|
||||
detect_mask[j][i] = False
|
||||
|
||||
datafile.Close()
|
||||
|
||||
#Remove empty values from detection arrays
|
||||
final_theta_d = theta_d[detect_mask]
|
||||
final_phi_d = phi_d[detect_mask]
|
||||
final_ke_d = ke_d[detect_mask]
|
||||
|
||||
#figs = {}
|
||||
#axes = {}
|
||||
|
||||
'''
|
||||
for i in range(len(names)):
|
||||
figs[i], axes[i] = plt.subplots(2,2)
|
||||
'''
|
||||
fig, axes = plt.subplots(len(names)-1,4)
|
||||
fig.set_size_inches(12, 12)
|
||||
|
||||
for i in range(1, len(names)):
|
||||
'''
|
||||
axes[i][0][0].plot(theta[i], ke[i], marker=',', linestyle='None')
|
||||
axes[i][0][0].set_title(names[i]+" KE vs. Theta")
|
||||
axes[i][0][0].set_xlabel(r"$\theta$ (degrees)")
|
||||
axes[i][0][0].set_ylabel("KE (MeV)")
|
||||
|
||||
axes[i][0][1].plot(phi[i], ke[i], marker=",", linestyle='None')
|
||||
axes[i][0][1].set_title(names[i]+" KE vs. Phi")
|
||||
axes[i][0][1].set_xlabel(r"$\phi$ (degrees)")
|
||||
axes[i][0][1].set_ylabel("KE (MeV)")
|
||||
|
||||
axes[i][1][0].plot(theta_d[i], ke_d[i], marker=',', linestyle='None')
|
||||
axes[i][1][0].set_title(names[i]+" KE vs. Theta -- Detected")
|
||||
axes[i][1][0].set_xlabel(r"$\theta$ (degrees)")
|
||||
axes[i][1][0].set_ylabel("KE (MeV)")
|
||||
|
||||
axes[i][1][1].plot(phi_d[i], ke_d[i], marker=",", linestyle='None')
|
||||
axes[i][1][1].set_title(names[i]+" KE vs. Phi -- Detected")
|
||||
axes[i][1][1].set_xlabel(r"$\phi$ (degrees)")
|
||||
axes[i][1][1].set_ylabel("KE (MeV)")
|
||||
'''
|
||||
|
||||
axes[i-1][0].plot(theta[i], ke[i], marker=',', linestyle='None')
|
||||
axes[i-1][0].set_title(names[i]+" KE vs. Theta")
|
||||
axes[i-1][0].set_xlabel(r"$\theta$ (degrees)")
|
||||
axes[i-1][0].set_ylabel("KE (MeV)")
|
||||
|
||||
axes[i-1][1].plot(phi[i], ke[i], marker=",", linestyle='None')
|
||||
axes[i-1][1].set_title(names[i]+" KE vs. Phi")
|
||||
axes[i-1][1].set_xlabel(r"$\phi$ (degrees)")
|
||||
axes[i-1][1].set_ylabel("KE (MeV)")
|
||||
|
||||
axes[i-1][2].plot(theta_d[i], ke_d[i], marker=',', linestyle='None')
|
||||
axes[i-1][2].set_title(names[i]+" KE vs. Theta -- Detected")
|
||||
axes[i-1][2].set_xlabel(r"$\theta$ (degrees)")
|
||||
axes[i-1][2].set_ylabel("KE (MeV)")
|
||||
|
||||
axes[i-1][3].plot(phi_d[i], ke_d[i], marker=",", linestyle='None')
|
||||
axes[i-1][3].set_title(names[i]+" KE vs. Phi -- Detected")
|
||||
axes[i-1][3].set_xlabel(r"$\phi$ (degrees)")
|
||||
axes[i-1][3].set_ylabel("KE (MeV)")
|
||||
|
||||
plt.tight_layout()
|
||||
plt.show(block=True)
|
||||
|
||||
print("Writing figure to file:", outputname)
|
||||
with open(outputname, "wb") as outfile:
|
||||
pickle.dump(fig, outfile)
|
||||
outfile.close()
|
||||
|
||||
print("Finished.")
|
||||
|
||||
def main():
|
||||
if len(sys.argv) == 3:
|
||||
PlotData(sys.argv[1], sys.argv[2])
|
||||
else:
|
||||
print("Unable to run PyPlotter, incorrect number of arguments! Need an input datafile name, and an output plot file name")
|
||||
|
||||
if __name__ == '__main__':
|
||||
main()
|
||||
|
||||
|
||||
|
||||
|
|
@ -1,32 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
|
||||
import matplotlib.pyplot as plt
|
||||
import numpy as np
|
||||
import pickle
|
||||
import sys
|
||||
|
||||
def SetManager(figure):
|
||||
dummy = plt.figure()
|
||||
manager = dummy.canvas.manager
|
||||
manager.canvas.figure = figure
|
||||
figure.set_canvas(manager.canvas)
|
||||
|
||||
def ViewPyPlots(filename):
|
||||
|
||||
figure = pickle.load(open(filename, "rb"))
|
||||
SetManager(figure)
|
||||
|
||||
figure.set_size_inches(12, 12)
|
||||
plt.tight_layout()
|
||||
|
||||
plt.show(block=True)
|
||||
|
||||
|
||||
def main():
|
||||
if len(sys.argv) == 2:
|
||||
ViewPyPlots(sys.argv[1])
|
||||
else:
|
||||
print("Unable to run ViewPyPlots, incorrect number of commandline arguments -- requires an input pickle file")
|
||||
|
||||
if __name__ == '__main__':
|
||||
main()
|
||||
Loading…
Reference in New Issue
Block a user