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24 changed files with 755 additions and 532 deletions

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@ -34,11 +34,13 @@ Detector geometry is encoded using ROOT math libraries in the `src/Detectors` fo
To choose which detector scheme is run, modify the main function in `src/Detectors/main.cpp`. The included geometries also have options to do an internal geometry consistency check and print out coordinates for drawing the detector arrays, which can be useful for testing. To choose which detector scheme is run, modify the main function in `src/Detectors/main.cpp`. The included geometries also have options to do an internal geometry consistency check and print out coordinates for drawing the detector arrays, which can be useful for testing.
To run the geometry code, one needs to provide an input file containing the following: the path of a Mask kinematics data file, the path to which data should be written, the path to a file containing a list of dead channels (optional, if not used, write None for the path), the number of threads to be used by the thread pool, and a keyword for the array type (current options are Sabre or Anasen)
To run Detectors use the format To run Detectors use the format
`./bin/Detectors <kinematics_datafile> <new_detection_datafile> <new_detection_statsfile>` `./bin/Detectors <input_file>`
where the detection datafile contains all of the kinematics data as well as information about which particles are detected and the statsfile is a text file containing efficiency statistics. An example input file is provided with the repository.
## Data visualization ## Data visualization
All data is saved as ROOT trees of std::vectors of Mask::Nucleus classes. To enable this, a ROOT dictionary is generated and linked into a shared library found in the `lib` directory of the repository. This allows the user to link to the shared library for accessing and analyzing the data generated by Mask. All data is saved as ROOT trees of std::vectors of Mask::Nucleus classes. To enable this, a ROOT dictionary is generated and linked into a shared library found in the `lib` directory of the repository. This allows the user to link to the shared library for accessing and analyzing the data generated by Mask.

5
detector_input.txt Normal file
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@ -0,0 +1,5 @@
InputDataFile: /media/data/gwm17/mask_tests/10B3Hea_16800keV_5Lia_74B.root
OutputDataFile: /media/data/gwm17/mask_tests/10B3Hea_16800keV_5Lia_74B_Sabre.root
DeadChannelFile: etc/sabreDeadChannels_May2022.txt
NumberOfThreads: 5
ArrayType: Sabre

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@ -1,7 +1,8 @@
----------Data Information---------- ----------Data Information----------
OutputFile: /media/data/gwm17/mask_tests/10B3Hea_16800keV_5Lia_74B.root OutputFile: /media/data/gwm17/mask_tests/10B3Hea_16800keV_5Lia_74B.root
NumberOfThreads: 6
----------Reaction Information---------- ----------Reaction Information----------
NumberOfSamples: 100000 NumberOfSamples: 1000000
begin_chain begin_chain
begin_step begin_step
Type: Reaction Type: Reaction

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@ -230,7 +230,7 @@ double AnasenArray::RunConsistencyCheck()
} }
DetectorResult AnasenArray::IsRing1(Mask::Nucleus& nucleus) DetectorResult AnasenArray::IsRing1(const Mask::Nucleus& nucleus)
{ {
DetectorResult observation; DetectorResult observation;
double thetaIncident; double thetaIncident;
@ -255,7 +255,7 @@ DetectorResult AnasenArray::IsRing1(Mask::Nucleus& nucleus)
return observation; return observation;
} }
DetectorResult AnasenArray::IsRing2(Mask::Nucleus& nucleus) DetectorResult AnasenArray::IsRing2(const Mask::Nucleus& nucleus)
{ {
DetectorResult observation; DetectorResult observation;
double thetaIncident; double thetaIncident;
@ -280,7 +280,7 @@ DetectorResult AnasenArray::IsRing2(Mask::Nucleus& nucleus)
return observation; return observation;
} }
DetectorResult AnasenArray::IsQQQ(Mask::Nucleus& nucleus) DetectorResult AnasenArray::IsQQQ(const Mask::Nucleus& nucleus)
{ {
DetectorResult observation; DetectorResult observation;
double thetaIncident; double thetaIncident;
@ -324,7 +324,7 @@ DetectorResult AnasenArray::IsQQQ(Mask::Nucleus& nucleus)
return observation; return observation;
} }
DetectorResult AnasenArray::IsAnasen(Mask::Nucleus& nucleus) DetectorResult AnasenArray::IsDetected(const Mask::Nucleus& nucleus)
{ {
DetectorResult result; DetectorResult result;
if(nucleus.GetKE() <= s_energyThreshold) if(nucleus.GetKE() <= s_energyThreshold)
@ -337,236 +337,4 @@ DetectorResult AnasenArray::IsAnasen(Mask::Nucleus& nucleus)
if(!result.detectFlag) if(!result.detectFlag)
result = IsQQQ(nucleus); result = IsQQQ(nucleus);
return result; return result;
}
void AnasenArray::CountCoincidences(const std::vector<Mask::Nucleus>& data, std::vector<int>& counts)
{
if (data.size() == 3 && data[1].isDetected && data[2].isDetected)
{
counts[0]++;
}
else if (data.size() == 4 && data[2].isDetected && data[3].isDetected)
{
counts[0]++;
}
else if(data.size() == 6)
{
if(data[2].isDetected && data[4].isDetected)
{
counts[0]++;
}
if(data[2].isDetected && data[5].isDetected)
{
counts[1]++;
}
if(data[4].isDetected && data[5].isDetected)
{
counts[2]++;
}
if(data[2].isDetected && data[4].isDetected && data[5].isDetected)
{
counts[3]++;
}
}
else if(data.size() == 8)
{
if(data[2].isDetected && data[4].isDetected)
{
counts[0]++;
}
if(data[2].isDetected && data[6].isDetected)
{
counts[1]++;
}
if(data[2].isDetected && data[7].isDetected)
{
counts[2]++;
}
if(data[4].isDetected && data[6].isDetected)
{
counts[3]++;
}
if(data[4].isDetected && data[7].isDetected)
{
counts[4]++;
}
if(data[6].isDetected && data[7].isDetected)
{
counts[5]++;
}
if(data[2].isDetected && data[4].isDetected && data[6].isDetected)
{
counts[6]++;
}
if(data[2].isDetected && data[4].isDetected && data[7].isDetected)
{
counts[7]++;
}
if(data[2].isDetected && data[6].isDetected && data[7].isDetected)
{
counts[8]++;
}
if(data[4].isDetected && data[6].isDetected && data[7].isDetected)
{
counts[9]++;
}
if(data[2].isDetected && data[4].isDetected && data[6].isDetected && data[7].isDetected)
{
counts[10]++;
}
}
}
void AnasenArray::CalculateEfficiency(const std::string& inputname, const std::string& outputname, const std::string& statsname) {
if(!dmap.IsValid())
{
std::cerr<<"Invalid Dead Channel Map at AnasenArray::CalculateEfficiency()! If you want to run with all possible";
std::cerr<<"channels active, simply load an empty file."<<std::endl;
return;
}
std::cout<<"----------ANASEN Efficiency Calculation----------"<<std::endl;
std::cout<<"Loading in output from kinematics simulation: "<<inputname<<std::endl;
std::cout<<"Running efficiency calculation..."<<std::endl;
TFile* input = TFile::Open(inputname.c_str(), "READ");
TFile* output = TFile::Open(outputname.c_str(), "RECREATE");
std::ofstream stats(statsname);
stats<<std::setprecision(5);
TTree* intree = (TTree*) input->Get("SimTree");
std::vector<Mask::Nucleus>* dataHandle = new std::vector<Mask::Nucleus>();
intree->SetBranchAddress("nuclei", &dataHandle);
output->cd();
TTree* outtree = new TTree("SimTree", "SimTree");
outtree->Branch("nuclei", dataHandle);
input->cd();
stats<<"Efficiency statistics for data from "<<inputname<<" using the ANASEN geometry"<<std::endl;
stats<<"Given in order of target=0, projectile=1, ejectile=2, residual=3, .... etc."<<std::endl;
intree->GetEntry(1);
std::vector<int> counts;
std::vector<int> coinc_counts;
counts.resize(dataHandle->size());
switch(counts.size())
{
case 3: coinc_counts.resize(1, 0); break;
case 4: coinc_counts.resize(1, 0); break;
case 6: coinc_counts.resize(4, 0); break;
case 8: coinc_counts.resize(11, 0); break;
default:
{
std::cerr<<"Bad reaction type at AnasenArray::CalculateEfficiency (given value: "<<counts.size()<<"). Quiting..."<<std::endl;
input->Close();
output->Close();
stats.close();
return;
}
}
uint64_t nentries = intree->GetEntries();
uint64_t percent5 = nentries*0.05;
uint64_t count = 0;
uint64_t npercent = 0;
Mask::Nucleus nucleus;
for(uint64_t i=0; i<nentries; i++)
{
intree->GetEntry(i);
if(++count == percent5)
{//Show progress every 5%
npercent++;
count = 0;
std::cout<<"\rPercent completed: "<<npercent*5<<"%"<<std::flush;
}
for(std::size_t j=0; j<dataHandle->size(); j++)
{
Mask::Nucleus& nucleus = (*dataHandle)[j];
DetectorResult result = IsAnasen(nucleus);
if(result.detectFlag)
{
nucleus.isDetected = true;
nucleus.detectedKE = result.energy_deposited;
nucleus.detectedTheta = result.direction.Theta();
nucleus.detectedPhi = result.direction.Phi();
counts[j]++;
}
}
CountCoincidences(*dataHandle, coinc_counts);
outtree->Fill();
}
input->Close();
output->cd();
outtree->Write(outtree->GetName(), TObject::kOverwrite);
output->Close();
delete dataHandle;
stats<<std::setw(10)<<"Index"<<"|"<<std::setw(10)<<"Efficiency"<<std::endl;
stats<<"---------------------"<<std::endl;
for(unsigned int i=0; i<counts.size(); i++)
{
stats<<std::setw(10)<<i<<"|"<<std::setw(10)<<((double)counts[i]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
stats<<"Coincidence Efficiency"<<std::endl;
stats<<"---------------------"<<std::endl;
if(dataHandle->size() == 3)
{
stats<<std::setw(10)<<"1 + 2"<<"|"<<std::setw(10)<<((double)coinc_counts[0]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
else if(dataHandle->size() == 4)
{
stats<<std::setw(10)<<"2 + 3"<<"|"<<std::setw(10)<<((double)coinc_counts[0]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
else if(dataHandle->size() == 6)
{
stats<<std::setw(10)<<"2 + 4"<<"|"<<std::setw(10)<<((double)coinc_counts[0]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 5"<<"|"<<std::setw(10)<<((double)coinc_counts[1]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"4 + 5"<<"|"<<std::setw(10)<<((double)coinc_counts[2]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 4 + 5"<<"|"<<std::setw(10)<<((double)coinc_counts[3]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
else if(dataHandle->size() == 8)
{
stats<<std::setw(10)<<"2 + 4"<<"|"<<std::setw(10)<<((double)coinc_counts[0]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 6"<<"|"<<std::setw(10)<<((double)coinc_counts[1]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[2]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"4 + 6"<<"|"<<std::setw(10)<<((double)coinc_counts[3]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"4 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[4]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"6 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[5]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 4 + 6"<<"|"<<std::setw(10)<<((double)coinc_counts[6]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 4 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[7]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 6 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[8]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"4 + 6 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[9]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 4 + 6 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[10]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
stats.close();
std::cout<<std::endl;
std::cout<<"Complete."<<std::endl;
std::cout<<"---------------------------------------------"<<std::endl;
} }

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@ -6,8 +6,8 @@
#include "DetectorArray.h" #include "DetectorArray.h"
#include "SX3Detector.h" #include "SX3Detector.h"
#include "QQQDetector.h" #include "QQQDetector.h"
#include "Target.h" #include "Mask/Target.h"
#include "Nucleus.h" #include "Mask/Nucleus.h"
#include "AnasenDeadChannelMap.h" #include "AnasenDeadChannelMap.h"
class AnasenArray : public DetectorArray class AnasenArray : public DetectorArray
@ -15,17 +15,15 @@ class AnasenArray : public DetectorArray
public: public:
AnasenArray(); AnasenArray();
~AnasenArray(); ~AnasenArray();
virtual void CalculateEfficiency(const std::string& inputname, const std::string& outputname, const std::string& statsname) override; virtual DetectorResult IsDetected(const Mask::Nucleus& nucleus);
virtual void DrawDetectorSystem(const std::string& filename) override; virtual void DrawDetectorSystem(const std::string& filename) override;
virtual double RunConsistencyCheck() override; virtual double RunConsistencyCheck() override;
inline void SetDeadChannelMap(const std::string& filename) { dmap.LoadMapfile(filename); } virtual void SetDeadChannelMap(const std::string& filename) override { dmap.LoadMapfile(filename); }
private: private:
DetectorResult IsRing1(Mask::Nucleus& nucleus); DetectorResult IsRing1(const Mask::Nucleus& nucleus);
DetectorResult IsRing2(Mask::Nucleus& nucleus); DetectorResult IsRing2(const Mask::Nucleus& nucleus);
DetectorResult IsQQQ(Mask::Nucleus& nucleus); DetectorResult IsQQQ(const Mask::Nucleus& nucleus);
DetectorResult IsAnasen(Mask::Nucleus& nucleus);
void CountCoincidences(const std::vector<Mask::Nucleus>& data, std::vector<int>& counts);
std::vector<SX3Detector> m_Ring1; std::vector<SX3Detector> m_Ring1;
std::vector<SX3Detector> m_Ring2; std::vector<SX3Detector> m_Ring2;

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@ -18,6 +18,9 @@ target_sources(Detectors PUBLIC
SabreArray.h SabreArray.h
SX3Detector.cpp SX3Detector.cpp
SX3Detector.h SX3Detector.h
DetectorApp.h
DetectorApp.cpp
DetectorArray.cpp
) )
target_link_libraries(Detectors target_link_libraries(Detectors

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@ -0,0 +1,144 @@
#include "DetectorApp.h"
#include <fstream>
#include <iostream>
DetectorApp::DetectorApp() :
m_resources(nullptr)
{
}
DetectorApp::~DetectorApp()
{
for(std::size_t i=0; i<m_detectorList.size(); i++)
delete m_detectorList[i];
}
bool DetectorApp::LoadConfig(const std::string& filename)
{
std::cout<<"----------Detector Efficiency Calculation----------"<<std::endl;
std::ifstream input(filename);
if(!input.is_open())
{
std::cerr<<"Unable to open input config file "<<filename<<std::endl;
return false;
}
std::string junk;
std::string typeName;
input >> junk >> m_inputFileName;
input >> junk >> m_outputFileName;
input >> junk >> m_deadChannelFileName;
input >> junk >> m_nthreads;
input >> junk >> typeName;
std::cout << "Creating " << m_nthreads << " detector arrays..." << std::endl;
ArrayType type = StringToArrayType(typeName);
for(uint64_t i=0; i<m_nthreads; i++)
{
m_detectorList.push_back(CreateDetectorArray(type));
if(m_deadChannelFileName != "None")
m_detectorList.back()->SetDeadChannelMap(m_deadChannelFileName);
}
std::cout << "Done" << std::endl;
std::cout << "Allocating " << m_nthreads << " threads..." << std::endl;
m_resources = std::make_unique<Mask::ThreadPool<DetectorArray*, uint64_t>>(m_nthreads);
std::cout << "Done" << std::endl;
std::cout << "Opening input data file " << m_inputFileName << "..." << std::endl;
m_fileReader.Open(m_inputFileName, "SimTree");
if(!m_fileReader.IsOpen() || !m_fileReader.IsTree())
{
std::cerr << "Unable to open input data file " << m_inputFileName << std::endl;
return false;
}
m_nentries = m_fileReader.GetSize();
std::cout << "Done. Detected " << m_nentries << " events in the file." << std::endl;
//Little bit of integer division mangling to make sure we read every event in file
uint64_t quotient = m_nentries / m_nthreads;
uint64_t remainder = m_nentries % m_nthreads;
m_chunkSamples.push_back(quotient + remainder);
for(uint64_t i=1; i<m_nthreads; i++)
m_chunkSamples.push_back(quotient);
std::cout << "Opening output data file " << m_outputFileName << std::endl;
m_fileWriter.Open(m_outputFileName, "SimTree");
if(!m_fileWriter.IsOpen() || !m_fileWriter.IsTree())
{
std::cerr << "Unable to open output data file " << m_outputFileName << std::endl;
return false;
}
std::cout << "Done" << std::endl;
std::cout << "Ready to launch!" << std::endl;
return true;
}
void DetectorApp::Run()
{
std::cout<<"Running efficiency calculation..."<<std::endl;
if(m_detectorList.size() != m_nthreads)
{
std::cerr << "Detector list not equal to number of threads" << std::endl;
return;
}
for(uint64_t i=0; i<m_detectorList.size(); i++)
{
//Create a job for the thread pool, using a lambda and providing a tuple of the arguments
m_resources->PushJob({[this](DetectorArray* array, uint64_t chunkSamples)
{
if(system == nullptr)
return;
std::vector<Mask::Nucleus> data;
DetectorResult result;
for(uint64_t i=0; i<chunkSamples; i++)
{
m_fileReader.Read(data);
for(auto& nucleus : data)
{
result = array->IsDetected(nucleus);
if(result.detectFlag)
{
nucleus.isDetected = true;
nucleus.detectedKE = result.energy_deposited;
nucleus.detectedTheta = result.direction.Theta();
nucleus.detectedPhi = result.direction.Phi();
}
}
m_fileWriter.PushData(data);
}
},
{m_detectorList[i], m_chunkSamples[i]} //arguments to function, in order
}
);
}
uint64_t size = m_fileReader.GetSize();
uint64_t count = 0;
double percent = 0.05;
uint64_t flushVal = size*percent;
uint64_t flushCount = 0;
while(true)
{
if(count == flushVal)
{
count = 0;
++flushCount;
std::cout<<"\rPercent of data written to disk: "<<percent*flushCount*100<<"%"<<std::flush;
}
if(m_resources->IsFinished() && m_fileWriter.GetQueueSize() == 0)
break;
else if(m_fileWriter.Write())
++count;
}
}

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@ -0,0 +1,40 @@
#ifndef DETECTOR_APP_H
#define DETECTOR_APP_H
#include "DetectorArray.h"
#include "Mask/FileWriter.h"
#include "Mask/FileReader.h"
#include "Mask/ThreadPool.h"
#include <string>
#include <vector>
#include <memory>
class DetectorApp
{
public:
DetectorApp();
~DetectorApp();
bool LoadConfig(const std::string& filename);
void Run();
private:
std::vector<DetectorArray*> m_detectorList; //One array per thread
std::vector<uint64_t> m_chunkSamples;
Mask::FileWriter m_fileWriter;
Mask::FileReader m_fileReader;
std::string m_inputFileName;
std::string m_outputFileName;
std::string m_deadChannelFileName;
uint64_t m_nthreads;
uint64_t m_nentries;
std::unique_ptr<Mask::ThreadPool<DetectorArray*, uint64_t>> m_resources;
};
#endif

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@ -0,0 +1,35 @@
#include "DetectorArray.h"
#include "AnasenArray.h"
#include "SabreArray.h"
DetectorArray* CreateDetectorArray(ArrayType type)
{
switch(type)
{
case ArrayType::None: return nullptr;
case ArrayType::Anasen: return new AnasenArray();
case ArrayType::Sabre: return new SabreArray();
}
return nullptr;
}
std::string ArrayTypeToString(ArrayType type)
{
switch(type)
{
case ArrayType::None: return "None";
case ArrayType::Anasen: return "Anasen";
case ArrayType::Sabre: return "Sabre";
}
return "None";
}
ArrayType StringToArrayType(const std::string& value)
{
if (value == "Anasen")
return ArrayType::Anasen;
else if (value == "Sabre")
return ArrayType::Sabre;
else
return ArrayType::None;
}

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@ -5,6 +5,7 @@
#include <cmath> #include <cmath>
#include "Math/Point3D.h" #include "Math/Point3D.h"
#include "Mask/Nucleus.h"
struct DetectorResult struct DetectorResult
{ {
@ -14,15 +15,23 @@ struct DetectorResult
std::string det_name = ""; std::string det_name = "";
}; };
enum class ArrayType
{
None,
Anasen,
Sabre
};
class DetectorArray class DetectorArray
{ {
public: public:
DetectorArray() {}; DetectorArray() {};
virtual ~DetectorArray() {}; virtual ~DetectorArray() {};
virtual void CalculateEfficiency(const std::string& inputname, const std::string& outputname, const std::string& statsname) = 0; virtual DetectorResult IsDetected(const Mask::Nucleus& nucleus) = 0;
virtual void DrawDetectorSystem(const std::string& filename) = 0; virtual void DrawDetectorSystem(const std::string& filename) = 0;
virtual double RunConsistencyCheck() = 0; virtual double RunConsistencyCheck() = 0;
virtual void SetDeadChannelMap(const std::string& filename) = 0;
protected: protected:
bool IsDoubleEqual(double x, double y) { return std::fabs(x-y) < s_epsilon ? true : false; }; bool IsDoubleEqual(double x, double y) { return std::fabs(x-y) < s_epsilon ? true : false; };
@ -30,4 +39,10 @@ protected:
static constexpr double s_epsilon = 1.0e-6; static constexpr double s_epsilon = 1.0e-6;
}; };
DetectorArray* CreateDetectorArray(ArrayType type);
std::string ArrayTypeToString(ArrayType type);
ArrayType StringToArrayType(const std::string& value);
#endif #endif

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@ -31,161 +31,6 @@ SabreArray::SabreArray() :
SabreArray::~SabreArray() {} SabreArray::~SabreArray() {}
void SabreArray::CalculateEfficiency(const std::string& inputname, const std::string& outputname, const std::string& statsname)
{
std::cout<<"----------SABRE Efficiency Calculation----------"<<std::endl;
std::cout<<"Loading in output from kinematics simulation: "<<inputname<<std::endl;
std::cout<<"Running efficiency calculation..."<<std::endl;
if(!m_deadMap.IsValid())
{
std::cerr<<"Unable to run SABRE Efficiency without a dead channel map."<<std::endl;
std::cerr<<"If you have no dead channels, simply make a file that's empty"<<std::endl;
std::cerr<<"Exiting."<<std::endl;
std::cout<<"---------------------------------------------"<<std::endl;
}
TFile* input = TFile::Open(inputname.c_str(), "READ");
TFile* output = TFile::Open(outputname.c_str(), "RECREATE");
std::ofstream stats(statsname);
stats<<std::setprecision(5);
TTree* intree = (TTree*) input->Get("SimTree");
std::vector<Mask::Nucleus>* dataHandle = new std::vector<Mask::Nucleus>();
intree->SetBranchAddress("nuclei", &dataHandle);
output->cd();
TTree* outtree = new TTree("SimTree", "SimTree");
outtree->Branch("nuclei", dataHandle);
input->cd();
stats<<"Efficiency statistics for data from "<<inputname<<" using the ANASEN geometry"<<std::endl;
stats<<"Given in order of target=0, projectile=1, ejectile=2, residual=3, .... etc."<<std::endl;
intree->GetEntry(1);
std::vector<int> counts;
std::vector<int> coinc_counts;
counts.resize(dataHandle->size());
switch(counts.size())
{
case 3: coinc_counts.resize(1, 0); break;
case 4: coinc_counts.resize(1, 0); break;
case 6: coinc_counts.resize(4, 0); break;
case 8: coinc_counts.resize(11, 0); break;
default:
{
std::cerr<<"Bad reaction type at AnasenEfficiency::CalculateEfficiency (given value: "<<counts.size()<<"). Quiting..."<<std::endl;
input->Close();
output->Close();
stats.close();
return;
}
}
uint64_t nentries = intree->GetEntries();
uint64_t percent5 = nentries*0.05;
uint64_t count = 0;
uint64_t npercent = 0;
Mask::Nucleus nucleus;
for(uint64_t i=0; i<nentries; i++)
{
intree->GetEntry(i);
if(++count == percent5)
{//Show progress every 5%
npercent++;
count = 0;
std::cout<<"\rPercent completed: "<<npercent*5<<"%"<<std::flush;
}
for(std::size_t j=0; j<dataHandle->size(); j++)
{
Mask::Nucleus& nucleus = (*dataHandle)[j];
DetectorResult result = IsSabre(nucleus);
if(result.detectFlag)
{
nucleus.isDetected = true;
nucleus.detectedKE = result.energy_deposited;
nucleus.detectedTheta = result.direction.Theta();
nucleus.detectedPhi = result.direction.Phi();
counts[j]++;
}
}
CountCoincidences(*dataHandle, coinc_counts);
outtree->Fill();
}
input->Close();
output->cd();
outtree->Write(outtree->GetName(), TObject::kOverwrite);
output->Close();
delete dataHandle;
stats<<std::setw(10)<<"Index"<<"|"<<std::setw(10)<<"Efficiency"<<std::endl;
stats<<"---------------------"<<std::endl;
for(unsigned int i=0; i<counts.size(); i++) {
stats<<std::setw(10)<<i<<"|"<<std::setw(10)<<((double)counts[i]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
stats<<"Coincidence Efficiency"<<std::endl;
stats<<"---------------------"<<std::endl;
if(counts.size() == 3)
{
stats<<std::setw(10)<<"1 + 2"<<"|"<<std::setw(10)<<((double)coinc_counts[0]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
else if(counts.size() == 4)
{
stats<<std::setw(10)<<"2 + 3"<<"|"<<std::setw(10)<<((double)coinc_counts[0]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
else if(counts.size() == 6)
{
stats<<std::setw(10)<<"2 + 4"<<"|"<<std::setw(10)<<((double)coinc_counts[0]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 5"<<"|"<<std::setw(10)<<((double)coinc_counts[1]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"4 + 5"<<"|"<<std::setw(10)<<((double)coinc_counts[2]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 4 + 5"<<"|"<<std::setw(10)<<((double)coinc_counts[3]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
else if(counts.size() == 8)
{
stats<<std::setw(10)<<"2 + 4"<<"|"<<std::setw(10)<<((double)coinc_counts[0]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 6"<<"|"<<std::setw(10)<<((double)coinc_counts[1]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[2]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"4 + 6"<<"|"<<std::setw(10)<<((double)coinc_counts[3]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"4 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[4]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"6 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[5]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 4 + 6"<<"|"<<std::setw(10)<<((double)coinc_counts[6]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 4 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[7]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 6 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[8]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"4 + 6 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[9]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
stats<<std::setw(10)<<"2 + 4 + 6 + 7"<<"|"<<std::setw(10)<<((double)coinc_counts[10]/nentries)<<std::endl;
stats<<"---------------------"<<std::endl;
}
stats.close();
std::cout<<std::endl;
std::cout<<"Complete."<<std::endl;
std::cout<<"---------------------------------------------"<<std::endl;
}
void SabreArray::DrawDetectorSystem(const std::string& filename) void SabreArray::DrawDetectorSystem(const std::string& filename)
{ {
std::ofstream output(filename); std::ofstream output(filename);
@ -259,7 +104,7 @@ double SabreArray::RunConsistencyCheck()
} }
/*Returns if detected, as well as total energy deposited in SABRE*/ /*Returns if detected, as well as total energy deposited in SABRE*/
DetectorResult SabreArray::IsSabre(Mask::Nucleus& nucleus) DetectorResult SabreArray::IsDetected(const Mask::Nucleus& nucleus)
{ {
DetectorResult observation; DetectorResult observation;
if(nucleus.GetKE() <= s_energyThreshold) if(nucleus.GetKE() <= s_energyThreshold)
@ -297,82 +142,4 @@ DetectorResult SabreArray::IsSabre(Mask::Nucleus& nucleus)
observation.detectFlag = false; observation.detectFlag = false;
return observation; return observation;
} }
void SabreArray::CountCoincidences(const std::vector<Mask::Nucleus>& data, std::vector<int>& counts)
{
if (data.size() == 3 && data[1].isDetected && data[2].isDetected)
{
counts[0]++;
}
else if (data.size() == 4 && data[2].isDetected && data[3].isDetected)
{
counts[0]++;
}
else if(data.size() == 6)
{
if(data[2].isDetected && data[4].isDetected)
{
counts[0]++;
}
if(data[2].isDetected && data[5].isDetected)
{
counts[1]++;
}
if(data[4].isDetected && data[5].isDetected)
{
counts[2]++;
}
if(data[2].isDetected && data[4].isDetected && data[5].isDetected)
{
counts[3]++;
}
}
else if(data.size() == 8)
{
if(data[2].isDetected && data[4].isDetected)
{
counts[0]++;
}
if(data[2].isDetected && data[6].isDetected)
{
counts[1]++;
}
if(data[2].isDetected && data[7].isDetected)
{
counts[2]++;
}
if(data[4].isDetected && data[6].isDetected)
{
counts[3]++;
}
if(data[4].isDetected && data[7].isDetected)
{
counts[4]++;
}
if(data[6].isDetected && data[7].isDetected)
{
counts[5]++;
}
if(data[2].isDetected && data[4].isDetected && data[6].isDetected)
{
counts[6]++;
}
if(data[2].isDetected && data[4].isDetected && data[7].isDetected)
{
counts[7]++;
}
if(data[2].isDetected && data[6].isDetected && data[7].isDetected)
{
counts[8]++;
}
if(data[4].isDetected && data[6].isDetected && data[7].isDetected)
{
counts[9]++;
}
if(data[2].isDetected && data[4].isDetected && data[6].isDetected && data[7].isDetected)
{
counts[10]++;
}
}
}

View File

@ -3,7 +3,7 @@
#include "DetectorArray.h" #include "DetectorArray.h"
#include "SabreDetector.h" #include "SabreDetector.h"
#include "Target.h" #include "Mask/Target.h"
#include "SabreDeadChannelMap.h" #include "SabreDeadChannelMap.h"
#include "Mask/Nucleus.h" #include "Mask/Nucleus.h"
@ -12,14 +12,12 @@ class SabreArray : public DetectorArray
public: public:
SabreArray(); SabreArray();
~SabreArray(); ~SabreArray();
void SetDeadChannelMap(const std::string& filename) { m_deadMap.LoadMapfile(filename); }; virtual void SetDeadChannelMap(const std::string& filename) override { m_deadMap.LoadMapfile(filename); };
void CalculateEfficiency(const std::string& inputname, const std::string& outputname, const std::string& statsname) override; virtual DetectorResult IsDetected(const Mask::Nucleus& nucleus) override;
void DrawDetectorSystem(const std::string& filename) override; void DrawDetectorSystem(const std::string& filename) override;
double RunConsistencyCheck() override; double RunConsistencyCheck() override;
private: private:
DetectorResult IsSabre(Mask::Nucleus& nucleus);
void CountCoincidences(const std::vector<Mask::Nucleus>& data, std::vector<int>& counts);
std::vector<SabreDetector> m_detectors; std::vector<SabreDetector> m_detectors;

View File

@ -1,5 +1,4 @@
#include "SabreArray.h" #include "DetectorApp.h"
#include "AnasenArray.h"
#include "KinematicsExceptions.h" #include "KinematicsExceptions.h"
#include <iostream> #include <iostream>
#include <string> #include <string>
@ -7,7 +6,7 @@
int main(int argc, char** argv) int main(int argc, char** argv)
{ {
if(argc != 4) if(argc != 2)
{ {
std::cerr<<"Incorrect number of commandline arguments! Returning."<<std::endl; std::cerr<<"Incorrect number of commandline arguments! Returning."<<std::endl;
return 1; return 1;
@ -19,26 +18,21 @@ int main(int argc, char** argv)
return 1; return 1;
} }
std::string inputname = argv[1]; try
std::string outputname = argv[2]; {
std::string statsname = argv[3]; DetectorApp app;
if(!app.LoadConfig(argv[1]))
{
std::cerr << "Unable to load config file " << argv[1] << ". Shutting down." << std::endl;
return 1;
}
app.Run();
SabreArray sabre; }
std::string mapfile = "./etc/sabreDeadChannels_May2022.txt"; catch(std::exception& e)
sabre.SetDeadChannelMap(mapfile); {
sabre.CalculateEfficiency(inputname, outputname, statsname); std::cerr << e.what() << std::endl;
//std::cout<<"Running consistency check(0=success): "<<sabre.RunConsistencyCheck()<<std::endl; return 1;
//sabre.DrawDetectorSystem("/data1/gwm17/10B3He/Feb2021/simulation/SABREGeo.txt"); }
/*
AnasenArray anasen;
std::string mapfile = "./etc/AnasenDeadChannels.txt";
anasen.SetDeadChannelMap(mapfile);
anasen.CalculateEfficiency(inputname, outputname, statsname);
//std::cout<<"Running consistency check(1=success): "<<anasen.RunConsistencyCheck()<<std::endl;
//anasen.DrawDetectorSystem("/data1/gwm17/TRIUMF_7Bed/simulation/ANASENGeo_centered_target_targetGap_BackQQQ_fixedZ.txt");
*/
return 0; return 0;
} }

View File

@ -24,6 +24,7 @@ int main(int argc, char** argv)
return 1; return 1;
} }
calculator.Run(); calculator.Run();
//calculator.RunSingleThread();
} }
catch(const std::exception& e) catch(const std::exception& e)
{ {

View File

@ -50,7 +50,15 @@ target_sources(Mask PRIVATE
ThreeStepSystem.h ThreeStepSystem.h
TwoStepSystem.cpp TwoStepSystem.cpp
TwoStepSystem.h TwoStepSystem.h
ThreadPool.h
FileWriter.h
FileWriter.cpp
FileReader.h
FileReader.cpp
) )
target_link_libraries(Mask catima MaskDict ${ROOT_LIBRARIES}) set(THREADS_PREFER_PTHREAD_FLAG On)
find_package(Threads REQUIRED)
target_link_libraries(Mask catima MaskDict ${ROOT_LIBRARIES} Threads::Threads)
set_target_properties(Mask PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${MASK_LIBRARY_DIR}) set_target_properties(Mask PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${MASK_LIBRARY_DIR})

66
src/Mask/FileReader.cpp Normal file
View File

@ -0,0 +1,66 @@
#include "FileReader.h"
namespace Mask {
FileReader::FileReader() :
m_file(nullptr), m_tree(nullptr), m_branchHandle(nullptr), m_currentEntry(0), m_size(0)
{
}
FileReader::FileReader(const std::string& filename, const std::string& treename) :
m_file(nullptr), m_tree(nullptr), m_branchHandle(nullptr), m_currentEntry(0), m_size(0)
{
Open(filename, treename);
}
FileReader::~FileReader()
{
Close();
}
void FileReader::Open(const std::string& filename, const std::string& treename)
{
if(m_file != nullptr || m_tree != nullptr)
Close();
m_file = TFile::Open(filename.c_str(), "READ");
if(m_file != nullptr && m_file->IsOpen())
{
m_tree = (TTree*) m_file->Get(treename.c_str());
if(m_tree == nullptr)
{
m_file->Close();
delete m_file;
m_file = nullptr;
}
m_branchHandle = new std::vector<Nucleus>();
m_tree->SetBranchAddress("nuclei", &m_branchHandle);
m_size = m_tree->GetEntries();
m_currentEntry = 0; //Reset file position
}
}
void FileReader::Close()
{
if(m_file != nullptr && m_file->IsOpen())
{
m_file->Close();
delete m_file;
m_file = nullptr;
}
}
bool FileReader::Read(std::vector<Nucleus>& dataHandle)
{
std::scoped_lock<std::mutex> guard(m_fileMutex);
int bytes = m_tree->GetEntry(m_currentEntry);
if(bytes != 0)
{
dataHandle = *m_branchHandle;
m_currentEntry++;
return true;
}
return false;
}
}

46
src/Mask/FileReader.h Normal file
View File

@ -0,0 +1,46 @@
#ifndef FILE_READER_H
#define FILE_READER_H
#include "Nucleus.h"
#include "TFile.h"
#include "TTree.h"
#include <vector>
#include <string>
#include <mutex>
#include <atomic>
namespace Mask {
class FileReader
{
public:
FileReader();
FileReader(const std::string& filename, const std::string& treename);
~FileReader();
void Open(const std::string& filename, const std::string& treename); //Not thread safe
void Close(); //Not thread safe
/*
Read: fills entry to given dataHandle. Returns true if data was successfully filled, otherwise returns false
*/
bool Read(std::vector<Nucleus>& dataHandle); //Thread safe
uint64_t GetSize() { return m_size; }//In entries (implicitly thread safe)
bool IsOpen() { return m_file == nullptr ? false : m_file->IsOpen(); } //Should be safe?
bool IsTree() { return m_tree != nullptr; } //Should be safe?
private:
TFile* m_file;
TTree* m_tree;
std::vector<Nucleus>* m_branchHandle;
std::mutex m_fileMutex;
std::atomic<uint64_t> m_currentEntry;
std::atomic<uint64_t> m_size; //in entries
};
}
#endif

75
src/Mask/FileWriter.cpp Normal file
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@ -0,0 +1,75 @@
#include "FileWriter.h"
namespace Mask {
FileWriter::FileWriter() :
m_file(nullptr), m_tree(nullptr), m_queueSize(0)
{
}
FileWriter::FileWriter(const std::string& filename, const std::string& treename) :
m_file(nullptr), m_tree(nullptr)
{
m_file = TFile::Open(filename.c_str(), "RECREATE");
if(m_file != nullptr && m_file->IsOpen())
{
m_tree = new TTree(treename.c_str(), treename.c_str());
m_tree->Branch("nuclei", &m_dataHandle);
}
}
FileWriter::~FileWriter()
{
Close();
}
void FileWriter::Open(const std::string& filename, const std::string& treename)
{
if(m_file != nullptr || m_tree != nullptr)
Close();
m_file = TFile::Open(filename.c_str(), "RECREATE");
if(m_file != nullptr && m_file->IsOpen())
{
m_tree = new TTree(treename.c_str(), treename.c_str());
m_tree->Branch("nuclei", &m_dataHandle);
}
}
void FileWriter::Close()
{
if(m_file->IsOpen())
{
if(m_tree != nullptr)
m_tree->Write(m_tree->GetName(), TObject::kOverwrite);
m_file->Close();
delete m_file;
m_file = nullptr;
}
}
void FileWriter::PushData(const std::vector<Nucleus>& data)
{
std::scoped_lock<std::mutex> guard(m_queueMutex);
m_queue.push(data);
++m_queueSize;
}
bool FileWriter::Write()
{
if(m_queueSize == 0)
return false;
//Aquire lock for as short a time as possible
{
std::scoped_lock<std::mutex> guard(m_queueMutex);
m_dataHandle = m_queue.front();
m_queue.pop();
}
--m_queueSize;
m_tree->Fill();
return true;
}
}

45
src/Mask/FileWriter.h Normal file
View File

@ -0,0 +1,45 @@
#ifndef FILE_WRITER_H
#define FILE_WRITER_H
#include "Nucleus.h"
#include "TFile.h"
#include "TTree.h"
#include <queue>
#include <mutex>
#include <atomic>
namespace Mask {
class FileWriter
{
public:
FileWriter();
FileWriter(const std::string& filename, const std::string& treename);
~FileWriter();
bool IsOpen() const { return m_file == nullptr ? false : m_file->IsOpen(); }
bool IsTree() const { return m_tree == nullptr ? false : true; }
std::size_t GetQueueSize() const { return m_queueSize; } //Implicitly thread-safe
void PushData(const std::vector<Nucleus>& data); //Thread-safe
bool Write(); //Not completely thread-safe, should only be used by main application loop (acess to queue is safe, but all else not)
void Open(const std::string& filename, const std::string& treename); //Not thread safe!
void Close(); //Not thread safe!
private:
TFile* m_file;
TTree* m_tree;
std::vector<Nucleus> m_dataHandle;
std::mutex m_queueMutex;
std::atomic<std::size_t> m_queueSize;
std::queue<std::vector<Nucleus>> m_queue;
};
}
#endif

View File

@ -8,7 +8,7 @@
namespace Mask { namespace Mask {
MaskApp::MaskApp() : MaskApp::MaskApp() :
m_system(nullptr) m_system(nullptr), m_resources(nullptr)
{ {
std::cout<<"----------Monte Carlo Simulation of Kinematics----------"<<std::endl; std::cout<<"----------Monte Carlo Simulation of Kinematics----------"<<std::endl;
} }
@ -16,6 +16,8 @@ namespace Mask {
MaskApp::~MaskApp() MaskApp::~MaskApp()
{ {
delete m_system; delete m_system;
for(std::size_t i=0; i<m_systemList.size(); i++)
delete m_systemList[i];
} }
bool MaskApp::LoadConfig(const std::string& filename) bool MaskApp::LoadConfig(const std::string& filename)
@ -31,10 +33,25 @@ namespace Mask {
std::string junk; std::string junk;
std::getline(input, junk); std::getline(input, junk);
input>>junk>>m_outputName; input>>junk>>m_outputName;
input>>junk>>m_nthreads;
std::getline(input, junk); std::getline(input, junk);
std::getline(input, junk); std::getline(input, junk);
input>>junk>>m_nsamples; input>>junk>>m_nsamples;
std::cout<<"Allocating resources... Asking for " << m_nthreads << " threads...";
m_resources = std::make_unique<ThreadPool<ReactionSystem*, uint64_t>>(m_nthreads);
std::cout<<" Complete."<<std::endl;
//Little bit of integer division mangling to make sure we do the total number of samples
uint64_t quotient = m_nsamples / m_nthreads;
uint64_t remainder = m_nsamples % m_nthreads;
m_chunkSamples.push_back(quotient + remainder);
for(uint64_t i=1; i<m_nthreads; i++)
m_chunkSamples.push_back(quotient);
std::cout<<"Outputing data to file: " << m_outputName <<std::endl;
m_fileWriter.Open(m_outputName, "SimTree");
std::vector<StepParameters> params; std::vector<StepParameters> params;
int z, a; int z, a;
while(input>>junk) while(input>>junk)
@ -98,10 +115,20 @@ namespace Mask {
m_system = CreateSystem(params); m_system = CreateSystem(params);
if(m_system == nullptr || !m_system->IsValid()) if(m_system == nullptr || !m_system->IsValid())
{ {
std::cerr<<"Param size: "<<params.size()<<std::endl;
std::cerr<<"Failure to parse reaction system... configuration not loaded."<<std::endl; std::cerr<<"Failure to parse reaction system... configuration not loaded."<<std::endl;
return false; return false;
} }
for(uint32_t i=0; i<m_nthreads; i++)
{
m_systemList.push_back(CreateSystem(params));
if(m_systemList.back() == nullptr || !m_systemList.back()->IsValid())
{
std::cerr<<"Failure to parse reaction system... configuration not loaded."<<std::endl;
return false;
}
}
std::getline(input, junk); std::getline(input, junk);
std::getline(input, junk); std::getline(input, junk);
@ -132,9 +159,13 @@ namespace Mask {
} }
m_system->SetLayeredTarget(target); m_system->SetLayeredTarget(target);
std::cout<<"Outputing data to file: "<<m_outputName<<std::endl; for(auto system : m_systemList)
std::cout<<"Reaction equation: "<<GetSystemName()<<std::endl; {
std::cout<<"Number of samples: "<<GetNumberOfSamples()<<std::endl; system->SetLayeredTarget(target);
}
std::cout<<"Reaction equation: "<<m_system->GetSystemEquation()<<std::endl;
std::cout<<"Number of samples: "<<m_nsamples<<std::endl;
return true; return true;
} }
@ -144,8 +175,59 @@ namespace Mask {
{ {
return true; return true;
} }
void MaskApp::Run() void MaskApp::Run()
{
std::cout<<"Running simulation..."<<std::endl;
if(m_systemList.size() != m_nthreads)
{
std::cerr << "System list not equal to number of threads" << std::endl;
return;
}
//Give our thread pool some tasks
for(std::size_t i=0; i<m_systemList.size(); i++)
{
//bind a lambda to the job, taking in a ReactionSystem, and then provide a reaction system as the tuple arguments.
m_resources->PushJob({[this](ReactionSystem* system, uint64_t chunkSamples)
{
if(system == nullptr)
return;
for(uint64_t i=0; i<chunkSamples; i++)
{
system->RunSystem();
m_fileWriter.PushData(*(system->GetNuclei()));
}
},
{m_systemList[i], m_chunkSamples[i]}});
}
uint64_t count = 0;
double percent = 0.05;
uint64_t flushVal = m_nsamples*percent;
uint64_t flushCount = 0;
while(true)
{
if(count == flushVal)
{
count = 0;
++flushCount;
std::cout<<"\rPercent of data written to disk: "<<percent*flushCount*100<<"%"<<std::flush;
}
if(m_resources->IsFinished() && m_fileWriter.GetQueueSize() == 0)
break;
else if(m_fileWriter.Write())
++count;
}
std::cout<<std::endl;
std::cout<<"Complete."<<std::endl;
std::cout<<"---------------------------------------------"<<std::endl;
}
void MaskApp::RunSingleThread()
{ {
std::cout<<"Running simulation..."<<std::endl; std::cout<<"Running simulation..."<<std::endl;
if(m_system == nullptr) if(m_system == nullptr)
@ -158,11 +240,11 @@ namespace Mask {
tree->Branch("nuclei", m_system->GetNuclei()); tree->Branch("nuclei", m_system->GetNuclei());
//For progress tracking //For progress tracking
uint32_t percent5 = 0.05*m_nsamples; uint64_t percent5 = 0.05*m_nsamples;
uint32_t count = 0; uint64_t count = 0;
uint32_t npercent = 0; uint64_t npercent = 0;
for(uint32_t i=0; i<m_nsamples; i++) for(uint64_t i=0; i<m_nsamples; i++)
{ {
if(++count == percent5) if(++count == percent5)
{ {

View File

@ -7,6 +7,10 @@
#include "TwoStepSystem.h" #include "TwoStepSystem.h"
#include "ThreeStepSystem.h" #include "ThreeStepSystem.h"
#include "RxnType.h" #include "RxnType.h"
#include "ThreadPool.h"
#include "FileWriter.h"
#include <memory>
namespace Mask { namespace Mask {
@ -17,18 +21,24 @@ namespace Mask {
~MaskApp(); ~MaskApp();
bool LoadConfig(const std::string& filename); bool LoadConfig(const std::string& filename);
bool SaveConfig(const std::string& filename); bool SaveConfig(const std::string& filename);
int GetNumberOfSamples() const { return m_nsamples; }
const std::string GetSystemName() const { return m_system == nullptr ? "Invalid System" : m_system->GetSystemEquation(); }
const std::string GetOutputName() const { return m_outputName; }
const RxnType GetReactionType() const { return m_rxnType; }
void Run(); void Run();
void RunSingleThread();
private: private:
void RunChunk(ReactionSystem* system);
ReactionSystem* m_system; ReactionSystem* m_system;
std::string m_outputName; std::string m_outputName;
RxnType m_rxnType; RxnType m_rxnType;
int m_nsamples; uint64_t m_nsamples;
uint32_t m_nthreads;
std::vector<ReactionSystem*> m_systemList; //One system for each thread
std::vector<uint64_t> m_chunkSamples;
FileWriter m_fileWriter;
std::unique_ptr<ThreadPool<ReactionSystem*, uint64_t>> m_resources;
}; };

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@ -1,8 +1,7 @@
#include "RandomGenerator.h" #include "RandomGenerator.h"
namespace Mask { namespace Mask {
RandomGenerator* RandomGenerator::s_instance = new RandomGenerator();
RandomGenerator::RandomGenerator() RandomGenerator::RandomGenerator()
{ {
std::random_device rd; std::random_device rd;

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@ -10,12 +10,15 @@ namespace Mask {
public: public:
~RandomGenerator(); ~RandomGenerator();
std::mt19937& GetGenerator() { return rng; } std::mt19937& GetGenerator() { return rng; }
static RandomGenerator& GetInstance() { return *s_instance; } static RandomGenerator& GetInstance()
{
static thread_local RandomGenerator s_instance;
return s_instance;
}
private: private:
RandomGenerator(); RandomGenerator();
static RandomGenerator* s_instance;
std::mt19937 rng; std::mt19937 rng;
}; };

118
src/Mask/ThreadPool.h Normal file
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@ -0,0 +1,118 @@
/*
ThreadPool.h
Simple thread pool implementation. Jobs are q'd, and as threads are made available, jobs are dispatched to these threads.
GWM -- Aug 2022
*/
#ifndef THREAD_POOL_H
#define THREAD_POOL_H
#include "ReactionSystem.h"
#include <vector>
#include <atomic>
#include <thread>
#include <mutex>
#include <functional>
#include <queue>
#include <condition_variable>
namespace Mask {
template<typename... Types>
class ThreadPool
{
public:
using JobFunction = std::function<void(Types...)>;
struct Job
{
JobFunction func;
std::tuple<Types...> argument;
};
ThreadPool(uint32_t nthreads) :
m_isStopped(false), m_numberRunning(0), m_queueSize(0), m_initShutdown(false)
{
for(uint32_t i=0; i<nthreads; i++)
{
m_pool.push_back(std::thread(std::bind(&ThreadPool::ExecuteJob, std::ref(*this))));
}
}
~ThreadPool()
{
if(!m_isStopped)
Shutdown();
}
void PushJob(Job job)
{
{
std::unique_lock<std::mutex> guard(m_poolMutex);
m_queue.push(job);
m_queueSize++;
}
m_wakeCondition.notify_one();
}
bool IsFinished()
{
return m_numberRunning == 0 && m_queueSize == 0;
}
void Shutdown()
{
m_initShutdown = true;
m_wakeCondition.notify_all();
for(auto& thread : m_pool)
{
thread.join();
}
m_pool.clear();
m_isStopped = true;
}
private:
void ExecuteJob()
{
while(true)
{
Job job;
{
std::unique_lock<std::mutex> guard(m_poolMutex);
m_wakeCondition.wait(guard, [this](){
return (!m_queue.empty() || m_initShutdown);
});
if(m_initShutdown)
return;
job = m_queue.front();
m_queue.pop();
}
//Change number running first so that no crash
m_numberRunning++;
m_queueSize--;
std::apply(job.func, job.argument);
m_numberRunning--;
}
}
std::queue<Job, std::deque<Job>> m_queue;
std::vector<std::thread> m_pool;
std::mutex m_poolMutex;
std::condition_variable m_wakeCondition;
bool m_isStopped;
std::atomic<int> m_numberRunning;
std::atomic<int> m_queueSize;
std::atomic<bool> m_initShutdown;
};
}
#endif