catima/CMakeLists.txt

 cmake_minimum_required(VERSION 3.2.0)
project(catima)

############ options #############
option(BUILD_SHARED_LIBS "build as shared library" ON)
option(PYTHON_MODULE "compile the Catima python module(requires numpy and cython installed)" OFF)
option(TESTS "build tests" OFF)
option(EXAMPLES "build examples" ON)
option(APPS "build catima applications" ON)
option(GLOBAL "build with global, sources are required" OFF)
option(REACTIONS "enable/disable nuclear reaction rate" ON)
option(STORE_SPLINES "store splines, if disables splines are always recreated" ON)
option(GSL_INTEGRATION "use GSL integration" OFF)
option(GSL_INTERPOLATION "use GSL inteRPOLATION" OFF)
option(THIN_TARGET_APPROXIMATION "thin target approximation" ON)
option(GENERATE_DATA "make data tables generator" OFF)
option(DOCS "build documentation (requires doxygen)" OFF)

######## build type ############
if(NOT CMAKE_BUILD_TYPE  STREQUAL "Debug")
    set(CMAKE_BUILD_TYPE "Release")
    set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE}")
    MESSAGE(STATUS "Build type Release")
else()
    set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -g")
    if (${CMAKE_CXX_COMPILER_ID} STREQUAL "Clang" OR ${CMAKE_CXX_COMPILER_ID} STREQUAL "GNU")
        set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -Wextra -Wfatal-errors -Wno-unused-parameter -Wno-sign-compare")
    endif()
    MESSAGE(STATUS "Build type Debug")
endif()
MESSAGE(STATUS "Build type: " ${CMAKE_BUILD_TYPE})
################################

######### compiler flags ###########
set(CMAKE_CXX_EXTENSIONS OFF)
set(CMAKE_CXX_STANDARD 14)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
MESSAGE(STATUS "install prefix: " ${CMAKE_INSTALL_PREFIX})

if(APPLE)
  set(RPATH_VARIABLE "DYLD_LIBRARY_PATH")
else()
  set(RPATH_VARIABLE "LD_LIBRARY_PATH")
endif()

############# Requirements ##################
if(GSL_INTEGRATION OR GSL_INTERPOLATION)
    find_package(GSL REQUIRED)
    MESSAGE(STATUS "GSL include dirs: " ${GSL_INCLUDE_DIRS})
    list(APPEND EXTRA_LIBS ${GSL_LIBRARIES} )
endif()

find_package(nurex QUIET)
if(nurex_FOUND)
message(STATUS "nurex library found")
set(NUREX ON)
list(APPEND EXTRA_LIBS nurex::nurex)
endif(nurex_FOUND)


configure_file(
                    "${CMAKE_CURRENT_SOURCE_DIR}/build_config.in"
                    "${CMAKE_CURRENT_BINARY_DIR}/include/catima/build_config.h"
                    )

configure_file("${PROJECT_SOURCE_DIR}/init.sh.in"
               "${PROJECT_BINARY_DIR}/init.sh"
              )
############### main build ###########################

file(GLOB SOURCES *.cpp)
if(GLOBAL)
file(GLOB GLOBAL_SOURCES global/*.c)
LIST (APPEND SOURCES ${GLOBAL_SOURCES})
endif(GLOBAL)
file(GLOB HEADERS *.h)

add_library(catima ${SOURCES})
set_target_properties(catima PROPERTIES
		      POSITION_INDEPENDENT_CODE ON
                      LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib
                      )

target_link_libraries(catima ${EXTRA_LIBS})

target_include_directories(catima 
                           PUBLIC  $<BUILD_INTERFACE:${PROJECT_BINARY_DIR}/include>
                                   $<BUILD_INTERFACE:${GSL_INCLUDE_DIRS}>
                          )

add_library(catima::catima ALIAS catima)

FILE(COPY ${HEADERS} DESTINATION ${PROJECT_BINARY_DIR}/include/catima)

# the compiler used for C++ files 
MESSAGE( STATUS "CMAKE_CXX_COMPILER: " ${CMAKE_CXX_COMPILER} )

######## for python module
find_package(PythonInterp)
if(PYTHONINTERP_FOUND)
    message("-- Python found: ${PYTHON_EXECUTABLE}")
endif()
if(PYTHON_MODULE)
    if(NOT PYTHONINTERP_FOUND)
        MESSAGE(SEND_ERROR "Python is required to build nurex python modules") 
    endif(NOT PYTHONINTERP_FOUND)
    #find_package(pybind11 REQUIRED)
    #set(PYBIND11_CPP_STANDARD -std=c++14)
    #pybind11_add_module(pycatima pymodule/pycatima)
    #target_include_directories(pycatima PUBLIC
    #                                $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/include>
    #                                $<BUILD_INTERFACE:${PROJECT_SOURCE_DIR}/libs>
    #                                $<INSTALL_INTERFACE:include>)
    #target_link_libraries(pycatima PRIVATE catima)

    find_program(CYTHON_EXECUTABLE 
                 NAMES cython cython2 cython3 cython.bat
                 DOC "path to the cython executable"
                )
    if(NOT CYTHON_EXECUTABLE)
        MESSAGE(SEND_ERROR "Cython not found, it is required to build nurex python modules") 
    endif(NOT CYTHON_EXECUTABLE)
    MESSAGE(STATUS "Cython found: " ${CYTHON_EXECUTABLE})
    
     ### build libraries string
    foreach(entry ${EXTRA_LIBS} ${GSL_LIBRARIES} catima)
        LIST (APPEND EXTRA_PYTHON_LIBS \"${entry}\")
    endforeach(entry ${EXTRA_LIBS} ${GSL_LIBRARIES} catima)
    string (REPLACE ";" "," EXTRA_PYTHON_LIBS "${EXTRA_PYTHON_LIBS}")
#    if(THREADS)
#    set (CYTHON_DEFINES "-DUSE_THREADS=1")
#    endif(THREADS)
     ### insert libraries string and create setup.py
    FILE(COPY catimac.pxd catima.pyx DESTINATION ${PROJECT_BINARY_DIR})
    set(CATIMA_LIB ${CMAKE_SHARED_LIBRARY_PREFIX}catima${CMAKE_SHARED_LIBRARY_SUFFIX})
    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/setup.py.in ${PROJECT_BINARY_DIR}/setup.py)
    add_custom_target(target_python ALL DEPENDS catima)
    add_custom_command(TARGET target_python
                        COMMAND ${PYTHON_EXECUTABLE} ${PROJECT_BINARY_DIR}/setup.py  build_ext ${CYTHON_DEFINES} -i                         
                        )
endif(PYTHON_MODULE )

########## Sub Directories ###########
if(EXAMPLES)
    file(GLOB EXAMPLES examples/*.cpp)
    FILE(COPY ${EXAMPLES} DESTINATION ${PROJECT_BINARY_DIR}/examples)
    FILE(COPY examples/makefile DESTINATION ${PROJECT_BINARY_DIR}/examples)
    #add_subdirectory("examples")
endif(EXAMPLES)
if(TESTS)
enable_testing()
add_subdirectory("tests")
endif(TESTS)

########## data generator ########
if(GENERATE_DATA)
add_executable(generate_ls_coeff utils/generator.cpp)
target_link_libraries(generate_ls_coeff catima)
#add_custom_command(
#    OUTPUT ${CMAKE_CURRENT_BINARY_DIR/include/generated_LS_coeff.h}
#    COMMAND 
#)
endif(GENERATE_DATA)

####### DOCS generation #########
if(DOCS)
find_package(Doxygen REQUIRED)
if(DOXYGEN_FOUND)
configure_file(${CMAKE_CURRENT_SOURCE_DIR}/doxygen.in ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile @ONLY)
add_custom_target(docs 
                   COMMAND ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile COMMENT "Generating API documentation with Doxygen" VERBATIM )
endif(DOXYGEN_FOUND)
endif(DOCS)

###### subdirectories ######
if(APPS)
add_subdirectory("bin")
endif(APPS)

####### install part #######
FILE(GLOB headers "*.h")
include(GNUInstallDirs)
install (TARGETS catima
        EXPORT catimaConfig
        LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
        ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR})
        
install (FILES ${headers} DESTINATION include/catima)

install(EXPORT catimaConfig
        NAMESPACE catima::
        DESTINATION lib/cmake/catima
         )
         
export(TARGETS catima NAMESPACE catima:: FILE catimaConfig.cmake)
export(PACKAGE catima)

###### packaging #######
set(CPACK_PACKAGE_NAME "catima")
set(CPACK_PACKAGE_VENDOR "A. Prochazka")
set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "")
set(CPACK_PACKAGE_VERSION "1.0.0")
set(CPACK_PACKAGE_VERSION_MAJOR "1")
set(CPACK_PACKAGE_VERSION_MINOR "0")
set(CPACK_PACKAGE_VERSION_PATCH "0")
set(CPACK_PACKAGE_INSTALL_DIRECTORY "catima")
include(CPack)