geant code and sx3 thickness correction

This commit is contained in:
James Szalkie 2026-07-15 11:26:38 -04:00
parent fe711c5485
commit 4d74f51db8
47 changed files with 29495 additions and 1020 deletions

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/run/verbose 2
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/run/initialize
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Armory/AnasenG4/README.md Normal file
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# AnasenG4 Geant4 Simulation
This folder contains a minimal Geant4 application that:
- builds the ANASEN detector geometry,
- adds a helium target volume,
- generates outgoing proton events from an `18Ne + 4He` alpha/p reaction using the external `ClassTransfer` reaction model,
- and propagates the particles with the Geant4 `FTFP_BERT` physics list.
## Build
```bash
cd /home/jamesszalkie/anasen/Armory/AnasenG4
rm -rf build
mkdir build
cd build
cmake ..
make -j4
```
## Run
```bash
cd /home/jamesszalkie/anasen/Armory/AnasenG4
./build/AnasenG4 macros/run.mac
```
## Notes
- The reaction generator uses `/home/jamesszalkie/anasen/Armory/mass20.txt` for isotope mass lookups.
- You can also run the interactive visualization macro:
```bash
./build/AnasenG4 macros/init_vis.mac
```

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Armory/AnasenG4/build/AnasenG4 Executable file

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@ -0,0 +1,54 @@
# Install script for directory: /home/jamesszalkie/anasen/Armory/AnasenG4
# Set the install prefix
if(NOT DEFINED CMAKE_INSTALL_PREFIX)
set(CMAKE_INSTALL_PREFIX "/usr/local")
endif()
string(REGEX REPLACE "/$" "" CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}")
# Set the install configuration name.
if(NOT DEFINED CMAKE_INSTALL_CONFIG_NAME)
if(BUILD_TYPE)
string(REGEX REPLACE "^[^A-Za-z0-9_]+" ""
CMAKE_INSTALL_CONFIG_NAME "${BUILD_TYPE}")
else()
set(CMAKE_INSTALL_CONFIG_NAME "")
endif()
message(STATUS "Install configuration: \"${CMAKE_INSTALL_CONFIG_NAME}\"")
endif()
# Set the component getting installed.
if(NOT CMAKE_INSTALL_COMPONENT)
if(COMPONENT)
message(STATUS "Install component: \"${COMPONENT}\"")
set(CMAKE_INSTALL_COMPONENT "${COMPONENT}")
else()
set(CMAKE_INSTALL_COMPONENT)
endif()
endif()
# Install shared libraries without execute permission?
if(NOT DEFINED CMAKE_INSTALL_SO_NO_EXE)
set(CMAKE_INSTALL_SO_NO_EXE "1")
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# Is this installation the result of a crosscompile?
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string(REPLACE ";" "\n" CMAKE_INSTALL_MANIFEST_CONTENT
"${CMAKE_INSTALL_MANIFEST_FILES}")
file(WRITE "/home/jamesszalkie/anasen/Armory/AnasenG4/build/${CMAKE_INSTALL_MANIFEST}"
"${CMAKE_INSTALL_MANIFEST_CONTENT}")

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@ -0,0 +1,15 @@
#ifndef ActionInitialization_h
#define ActionInitialization_h 1
#include "G4VUserActionInitialization.hh"
class ActionInitialization : public G4VUserActionInitialization
{
public:
ActionInitialization();
virtual ~ActionInitialization();
virtual void Build() const override;
};
#endif

View File

@ -0,0 +1,26 @@
#ifndef PrimaryGeneratorAction_h
#define PrimaryGeneratorAction_h 1
#include "G4VUserPrimaryGeneratorAction.hh"
#include "G4ThreeVector.hh"
class G4ParticleGun;
class G4Event;
class ReactionGenerator;
class PrimaryGeneratorAction : public G4VUserPrimaryGeneratorAction
{
public:
PrimaryGeneratorAction();
virtual ~PrimaryGeneratorAction();
virtual void GeneratePrimaries(G4Event* event) override;
private:
G4ParticleGun* fParticleGun;
ReactionGenerator* fReaction;
G4double fTargetRadius;
G4double fTargetHalfLength;
};
#endif

View File

@ -0,0 +1,23 @@
#ifndef ReactionGenerator_h
#define ReactionGenerator_h 1
struct ReactionOutput {
double kineticEnergy;
double px;
double py;
double pz;
};
class ReactionGenerator {
public:
ReactionGenerator();
~ReactionGenerator();
ReactionOutput SampleEvent();
private:
class Impl;
Impl* fImpl;
};
#endif

View File

@ -0,0 +1,7 @@
/control/verbose 2
/control/saveHistory
/run/verbose 2
/event/verbose 0
/tracking/verbose 0
/run/initialize
/control/execute vis.mac

6
Armory/AnasenG4/run.mac Normal file
View File

@ -0,0 +1,6 @@
/control/verbose 1
/run/verbose 1
/event/verbose 0
/tracking/verbose 0
/run/initialize
/run/beamOn 10000

View File

@ -0,0 +1,13 @@
#include "ActionInitialization.hh"
#include "PrimaryGeneratorAction.hh"
ActionInitialization::ActionInitialization()
: G4VUserActionInitialization()
{}
ActionInitialization::~ActionInitialization() {}
void ActionInitialization::Build() const
{
SetUserAction(new PrimaryGeneratorAction());
}

View File

@ -35,6 +35,15 @@ G4VPhysicalVolume* DetectorConstruction::Construct()
G4LogicalVolume* logicWorld = new G4LogicalVolume(solidWorld, vacuum, "World");
G4VPhysicalVolume* physWorld = new G4PVPlacement(0, G4ThreeVector(), logicWorld, "World", 0, false, 0, true);
// Helium target
G4Material* he = nist->FindOrBuildMaterial("G4_He");
const G4double targetRadius = 20.*mm;
const G4double targetHalfLength = 175.*mm;
G4Tubs* solidTarget = new G4Tubs("Target", 0, targetRadius, targetHalfLength, 0, 360*deg);
G4LogicalVolume* logicTarget = new G4LogicalVolume(solidTarget, he, "Target");
new G4PVPlacement(0, G4ThreeVector(), logicTarget, "Target", logicWorld, false, 0, true);
fScoringVolume = logicTarget;
// Axes (optional, for visualization)
G4Tubs* solidAxis = new G4Tubs("Axis", 0, 0.1*mm, 5.*mm, 0, 360*deg);
G4LogicalVolume* logicAxisX = new G4LogicalVolume(solidAxis, al, "AxisX");

View File

@ -0,0 +1,61 @@
#include "PrimaryGeneratorAction.hh"
#include "G4ParticleGun.hh"
#include "G4ParticleTable.hh"
#include "G4Proton.hh"
#include "G4SystemOfUnits.hh"
#include "G4Event.hh"
#include "G4PhysicalConstants.hh"
#include "G4RandomTools.hh"
#include "G4UnitsTable.hh"
#include "ReactionGenerator.hh"
#include <cmath>
PrimaryGeneratorAction::PrimaryGeneratorAction()
: G4VUserPrimaryGeneratorAction(),
fParticleGun(nullptr),
fReaction(nullptr),
fTargetRadius(20.0 * mm),
fTargetHalfLength(175.0 * mm)
{
G4int nParticle = 1;
fParticleGun = new G4ParticleGun(nParticle);
fParticleGun->SetParticleDefinition(G4Proton::ProtonDefinition());
fParticleGun->SetParticleMomentumDirection(G4ThreeVector(0., 0., 1.));
fParticleGun->SetParticleEnergy(1.0 * MeV);
fReaction = new ReactionGenerator();
}
PrimaryGeneratorAction::~PrimaryGeneratorAction()
{
delete fParticleGun;
delete fReaction;
}
void PrimaryGeneratorAction::GeneratePrimaries(G4Event* event)
{
ReactionOutput reaction = fReaction->SampleEvent();
G4double kineticEnergy = reaction.kineticEnergy;
if (kineticEnergy < 0) kineticEnergy = 0;
G4ThreeVector direction(reaction.px, reaction.py, reaction.pz);
if (direction.mag() > 0) {
direction = direction.unit();
} else {
direction = G4ThreeVector(0., 0., 1.);
}
G4double r = fTargetRadius * std::sqrt(G4UniformRand());
G4double phi = twopi * G4UniformRand();
G4double x = r * std::cos(phi);
G4double y = r * std::sin(phi);
G4double z = (2.0 * G4UniformRand() - 1.0) * fTargetHalfLength;
fParticleGun->SetParticlePosition(G4ThreeVector(x, y, z));
fParticleGun->SetParticleMomentumDirection(direction);
fParticleGun->SetParticleEnergy(kineticEnergy);
fParticleGun->GeneratePrimaryVertex(event);
}

View File

@ -0,0 +1,48 @@
#include "ReactionGenerator.hh"
#include "ClassTransfer.h"
#include "G4SystemOfUnits.hh"
#include "TRandom.h"
#include "TVector3.h"
#include "TLorentzVector.h"
#include <cmath>
struct ReactionGenerator::Impl {
TransferReaction transfer;
};
ReactionGenerator::ReactionGenerator()
: fImpl(nullptr)
{
// Ensure the isotope mass table is found when running from the AnasenG4 folder.
massData = "/home/jamesszalkie/anasen/Armory/mass20.txt";
fImpl = new Impl();
fImpl->transfer.SetA(18, 10, 0);
fImpl->transfer.Seta(4, 2);
fImpl->transfer.Setb(1, 1);
fImpl->transfer.SetB(21, 11, 0);
fImpl->transfer.SetIncidentEnergyAngle(10.0, 0.0, 0.0);
fImpl->transfer.CalReactionConstant();
}
ReactionGenerator::~ReactionGenerator()
{
delete fImpl;
}
ReactionOutput ReactionGenerator::SampleEvent()
{
const double cosTheta = 2.0 * gRandom->Rndm() - 1.0;
const double thetaCM = std::acos(cosTheta);
const double phiCM = gRandom->Rndm() * 2.0 * M_PI;
TLorentzVector* reactionOutput = fImpl->transfer.Event(thetaCM, phiCM);
TLorentzVector proton = reactionOutput[2];
delete[] reactionOutput;
ReactionOutput output;
output.kineticEnergy = proton.E() - proton.M();
output.px = proton.Px();
output.py = proton.Py();
output.pz = proton.Pz();
return output;
}

View File

@ -0,0 +1,44 @@
#include "DetectorConstruction.hh"
#include "ActionInitialization.hh"
#include "G4RunManagerFactory.hh"
#include "G4UImanager.hh"
#include "G4VisExecutive.hh"
#include "G4UIExecutive.hh"
#include "G4PhysListFactory.hh"
int main(int argc, char** argv)
{
G4UIExecutive* ui = nullptr;
if (argc == 1) {
ui = new G4UIExecutive(argc, argv);
}
auto* runManager = G4RunManagerFactory::CreateRunManager(G4RunManagerType::Default);
runManager->SetUserInitialization(new DetectorConstruction());
G4PhysListFactory physListFactory;
runManager->SetUserInitialization(physListFactory.GetReferencePhysList("FTFP_BERT"));
runManager->SetUserInitialization(new ActionInitialization());
auto* visManager = new G4VisExecutive(argc, argv);
visManager->Initialize();
auto* uiManager = G4UImanager::GetUIpointer();
if (ui) {
uiManager->ApplyCommand("/control/execute init_vis.mac");
ui->SessionStart();
delete ui;
} else {
G4String command = "/control/execute ";
G4String fileName = argv[1];
uiManager->ApplyCommand(command + fileName);
}
delete visManager;
delete runManager;
return 0;
}

32
Armory/AnasenG4/vis.mac Normal file
View File

@ -0,0 +1,32 @@
# Interactive visualization setup modeled on Geant4 basic example B1
/vis/open
/vis/viewer/set/autoRefresh false
/vis/verbose errors
/vis/drawVolume
/vis/viewer/set/viewpointVector -1 0 0
/vis/viewer/set/lightsVector -1 0 0
/vis/viewer/set/style wireframe
/vis/viewer/set/auxiliaryEdge true
/vis/viewer/set/lineSegmentsPerCircle 100
/tracking/storeTrajectory 1
/vis/scene/add/trajectories smooth
/vis/modeling/trajectories/create/drawByParticleID
/vis/modeling/trajectories/drawByParticleID-0/default/setDrawStepPts true
/vis/modeling/trajectories/drawByParticleID-0/default/setStepPtsSize 2
/vis/modeling/trajectories/drawByParticleID-0/set proton magenta
/vis/modeling/trajectories/drawByParticleID-0/set alpha orange
/vis/scene/endOfEventAction accumulate 20
/vis/geometry/set/visibility World 0 false
/vis/scene/add/axes 0 0 0 20 mm
/vis/viewer/set/background 1 1 1
/vis/viewer/set/style surface
/vis/viewer/set/hiddenMarker true
/vis/viewer/set/viewpointThetaPhi 120 150
/vis/viewer/set/autoRefresh true
/vis/verbose warnings
/vis/viewer/flush

File diff suppressed because it is too large Load Diff

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@ -314,6 +314,24 @@ def calculate_distance_tree2(vz, theta, z_max=34.86):
cos_theta = np.where(np.abs(cos_theta) < 1e-10, 1e-10, cos_theta)
return np.abs((z_max - vz) / cos_theta)
def calculate_sx3_thickness_path(theta, phi, sx3x, sx3y, thickness_cm=0.1):
"""Path length through SX3 silicon using incidence angle to detector normal.
SX3 detectors are arranged on a barrel, so the local normal is radial in x-y.
"""
rxy = np.sqrt(sx3x * sx3x + sx3y * sx3y)
nx = np.where(rxy > 1e-12, sx3x / rxy, 0.0)
ny = np.where(rxy > 1e-12, sx3y / rxy, 0.0)
ux = np.sin(theta) * np.cos(phi)
uy = np.sin(theta) * np.sin(phi)
cos_incidence = np.abs(ux * nx + uy * ny)
cos_incidence = np.clip(cos_incidence, 1e-4, 1.0)
return thickness_cm / cos_incidence
def load_tree_arrays(tree, treename, max_events=None):
branches = tree.keys(recursive=False)
return tree.arrays(branches, library="np", entry_stop=max_events)
@ -321,12 +339,12 @@ def load_tree_arrays(tree, treename, max_events=None):
def prepare_tree_data(tree, treename, particle, max_events=None, z_max=34.86):
data = load_tree_arrays(tree, treename, max_events)
#mask = (~np.isnan(data["sx3X"])) & (~np.isnan(data["Tb"]))
#data = {key: value[mask] for key, value in data.items()}
angle_mask = data["thetab"] > 60
Ei = data["Tb"]
Einan = np.isnan(Ei).sum()
print(f"sx3 NaN entries: {Einan}")
theta = np.radians(data["thetab"])
phi = np.radians(data["phib"])
vX = data["vX"]
vY = data["vY"]
vZ = data["vZ"]
@ -335,20 +353,22 @@ def prepare_tree_data(tree, treename, particle, max_events=None, z_max=34.86):
sx3X = data["sx3X"]
sx3Y = data["sx3Y"]
sx3Z = data["sx3Z"]
mask = ~np.isnan(sx3X) & ~np.isnan(sx3Y) & ~np.isnan(sx3Z)
sx3_valid_mask = ~np.isnan(sx3X) & ~np.isnan(sx3Y) & ~np.isnan(sx3Z)
mask = angle_mask & sx3_valid_mask
qqqX = data["qqqX"]
qqqY = data["qqqY"]
qqqZ = data["qqqZ"]
qqqnan = np.isnan(qqqZ).sum()
print(f"qqq NaN entries: {qqqnan}")
print(f"Total: {Einan + qqqnan}")
mask2 = ~np.isnan(sx3X) & ~np.isnan(sx3Y) & ~np.isnan(sx3Z)
mask2 = angle_mask & ~np.isnan(qqqX) & ~np.isnan(qqqY) & ~np.isnan(qqqZ)
#else:
# sx3Z = np.full_like(vZ, z_max) # Assume sx3Z is at z_max for tree2
# mask = ~np.isnan(Ei) & ~np.isnan(theta) & ~np.isnan(vZ)
Eisx3 = Ei[mask]
theta = theta[mask]
phi = phi[mask]
vXsx3 = vX[mask]
vYsx3 = vY[mask]
vZsx3 = vZ[mask]
@ -374,8 +394,9 @@ def prepare_tree_data(tree, treename, particle, max_events=None, z_max=34.86):
radii = np.array([3.7, 4.3])
dA = (radii[0] - np.sqrt((vXsx3/10)**2 + (vYsx3/10)**2))/ sin_theta
dC = (radii[1] - np.sqrt((vXsx3/10)**2 + (vYsx3/10)**2))/ sin_theta
lsx3 = (.1 / sin_theta)
lsx3 = calculate_sx3_thickness_path(theta, phi, sx3X, sx3Y, thickness_cm=0.1)
# Filter out unphysical distances (negative or unreasonably small)
# These typically occur at large angles where trajectory doesn't properly intersect proportional counters
sx3ID = data["sx3ID"]
@ -400,11 +421,13 @@ def prepare_tree_data(tree, treename, particle, max_events=None, z_max=34.86):
EC = energy_loss(particle, "He", Eisx3, dC)
Esx3 = energy_loss(particle, "He", Eisx3, dsx3)
Eqqq = energy_loss(particle, "He", Eiqqq, dqqq)
Prange = energy_distance("proton", "Si", Esx3, 0)
clear_interpolator_cache()
Efinal = energy_loss(particle, "Si", Esx3, lsx3)
Edet = Esx3 - Efinal
#Edet = np.where(Efinal <= 0, Esx3, Esx3 - Efinal)
Edet = (Esx3 - Efinal)
#Edet = np.where(Prange > lsx3, Efinal + Esx3, Esx3)
Elost = Eisx3 - Esx3
Elostqqq = Eiqqq - Eqqq
@ -414,6 +437,7 @@ def prepare_tree_data(tree, treename, particle, max_events=None, z_max=34.86):
"particle": particle,
"Ei": Eisx3,
"thetabi": data["thetab"],
"thetabqqq": data["thetab"][mask2],
"sx3Z": sx3Z,
"EA": EA,
"EC": EC,
@ -430,7 +454,9 @@ def prepare_tree_data(tree, treename, particle, max_events=None, z_max=34.86):
"qqqY": qqqY,
"qqqZ": qqqZ,
"Eqqq": Eqqq,
"Edet": Edet
"Edet": Edet,
"Efinal": Efinal,
"lsx3": lsx3
}
def infer_particle_from_filename(filename):
@ -504,7 +530,7 @@ class MyInteractiveApp(cmd.Cmd):
def __init__(self):
super().__init__()
# Initial value set when the script starts
self.buckets = 500
self.buckets = 10000
self.T = 293.15
self.P = 379
self.temp_particle = [0, 0.0, 0.0, ""]
@ -697,8 +723,8 @@ class MyInteractiveApp(cmd.Cmd):
medium = args[1]
Ei = float(args[2])
dl = float(args[3])
Ei_offset = Ei * 1.1
table_specs = f"{particle} {Ei_offset}"
#Ei_offset = Ei * 1.1
#table_specs = f"{particle} {Ei_offset}"
try:
#self.do_make_table(table_specs)
Ef = energy_loss(particle, medium, Ei, dl)
@ -1035,12 +1061,14 @@ class MyInteractiveApp(cmd.Cmd):
Ei = data["Ei"]
thetab = data["thetab"]
thetabqqq = data["thetabqqq"]
sx3X = data["sx3X"]
sx3Y = data["sx3Y"]
sx3Z = data["sx3Z"]
EA = data["EA"]
EC = data["EC"]
Esx3 = data["Esx3"]
Efinal = data["Efinal"]
Elost = data["Elost"]
Eprop = data["Eprop"]
dA = data["dA"]
@ -1076,7 +1104,7 @@ class MyInteractiveApp(cmd.Cmd):
qz = np.asarray(qqqZ, dtype=float)
qc = np.asarray(qqqE, dtype=float)
if x.size > 0 and True:
if x.size > 0 and False:
fig = plt.figure(figsize=(8,6))
ax = fig.add_subplot(111, projection='3d')
@ -1130,7 +1158,7 @@ class MyInteractiveApp(cmd.Cmd):
mask1 = ~np.isnan(Ei) & ~np.isnan(thetab)
plt.figure(figsize=(7,6))
plt.hist2d(thetab[mask1], Ei[mask1], bins=200)
plt.hist2d(np.radians(thetab[mask1]), Ei[mask1], bins=200)
plt.xlabel("thetab")
plt.ylabel("Event Energy (MeV)")
plt.title(f"{particle} ({treename}) Energy vs Theta")
@ -1141,9 +1169,31 @@ class MyInteractiveApp(cmd.Cmd):
plt.savefig(f"{base}/E_vs_theta.png", dpi=300)
plt.show()
mask1 = ~np.isnan(qqqE) & ~np.isnan(thetab)
plt.figure(figsize=(7,6))
plt.hist2d(qqqE[mask1], (np.sin(np.deg2rad(thetab)) * Elostqqq)[mask1], bins=200)
plt.hist2d(Esx3, Edet,bins=300)
plt.xlabel("Esx3")
plt.ylabel("Edet")
plt.title("Esx3 vs Edet")
plt.yscale("log")
plt.xscale("log")
plt.colorbar(label="counts")
plt.tight_layout()
plt.savefig(f"{base}/Esx3_vs_Edet.png")
plt.show()
plt.figure(figsize=(7,6))
plt.hist2d(Esx3, Efinal, bins=300)
plt.xlabel("Esx3")
plt.ylabel("Edet")
plt.title("Esx3 vs Efinal")
plt.colorbar(label="counts")
plt.tight_layout()
plt.savefig(f"{base}/Esx3_vs_Efinal.png")
plt.show()
mask1 = ~np.isnan(qqqE) & ~np.isnan(thetabqqq)
plt.figure(figsize=(7,6))
plt.hist2d(qqqE[mask1], (np.sin(np.deg2rad(thetabqqq)) * Elostqqq)[mask1], bins=200)
plt.ylabel("Elost x sin(theta)")
plt.xlabel("Eqqq (MeV)")
plt.title(f"{particle} ({treename}) Energy QQQ vs Elost * Theta")
@ -1168,9 +1218,9 @@ class MyInteractiveApp(cmd.Cmd):
plt.savefig(f"{base}/sx3E_vs_theta.png", dpi=300)
plt.show()
mask1 = (qqqE > 0) & ~np.isnan(thetab)
mask1 = (qqqE > 0) & ~np.isnan(thetabqqq)
plt.figure(figsize=(7,6))
plt.hist2d(thetab[mask1], qqqE[mask1], bins=200)
plt.hist2d(thetabqqq[mask1], qqqE[mask1], bins=200)
plt.xlabel("thetab")
plt.ylabel("E-QQQ")
plt.title(f"{particle} ({treename}) QQQ Energy vs Theta")
@ -1200,7 +1250,27 @@ class MyInteractiveApp(cmd.Cmd):
plt.tight_layout()
plt.savefig(f"{base}/Edet_hist.png", dpi=300)
plt.show()
plt.figure(figsize=(7,5))
plt.hist(Efinal, bins=200)
plt.xlabel("Final Energy (MeV)")
plt.ylabel("Counts")
plt.title(f"{particle} ({treename}) Final Energy after sx3")
plt.grid(True)
plt.tight_layout()
plt.savefig(f"{base}/Efinal_hist.png", dpi=300)
plt.show()
plt.figure(figsize=(7,5))
plt.hist(data["lsx3"], bins=200)
plt.xlabel("Distance travelled in sx3")
plt.ylabel("Counts")
plt.title(f"{particle} ({treename}) Distance Travelled in sx3")
plt.grid(True)
plt.tight_layout()
plt.savefig(f"{base}/lsx3.png", dpi=300)
plt.show()
plt.figure(figsize=(7,5))
plt.hist(Ei, bins=100, histtype='step', label='Vertex Energy')
plt.hist(Esx3[Esx3 != 0], bins=100, histtype='step', label='SX3 Energy')
@ -1292,7 +1362,7 @@ class MyInteractiveApp(cmd.Cmd):
plt.title(f"{particle} ({treename}) Energy Propagation Difference vs SX3 Energy Detected")
plt.colorbar(label="Counts")
#plt.xlim(0,30)
#plt.ylim(0,0.45)
#plt.ylim(0,.5)
plt.tight_layout()
plt.savefig(f"{base}/Eprop_vs_Edet.png", dpi=300)
plt.show()
@ -1309,7 +1379,7 @@ class MyInteractiveApp(cmd.Cmd):
branch_names.append(str(key))
branch_names = list(dict.fromkeys(branch_names))
if branch_names:
if branch_names and False:
print(f"Creating histograms for {len(branch_names)} branches...")
all_branches = self.tree.arrays(branch_names, library="np", entry_stop=max_events)

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