ANASEN_analysis/Armory/anasenMS.cpp
2026-05-19 16:00:49 -04:00

518 lines
20 KiB
C++

#include "TRandom.h" // ROOT random number generators, gRandom
#include "TFile.h" // ROOT file I/O
#include "TTree.h" // ROOT tree storage
#include "TH1.h" // 1D histograms
#include "TH2.h" // 2D histograms
#include "TStyle.h" // ROOT plotting style controls
#include "TCanvas.h" // ROOT canvas drawing
#include "TBenchmark.h" // timing measurement
#include "TGraph.h" // for energy loss interpolation
#include <cstring>
#include "TApplication.h" // ROOT app loop
#include "ClassTransfer.h" // Reaction kinematics and MC event generation
#include "ClassAnasen.h" // ANASEN detector model classes (SX3, PW, etc.)
#include <stdio.h>
#include <stdlib.h>
#include <set>
#include "TLegend.h"
#include "TH1D.h"
#include "TObjArray.h"
#include "TBranch.h"
#include <iostream>
#include <fstream>
//======== Generate light particle based on reaction
// calculate real and reconstructed tracks and Q-value uncertainty
// Function to load energy loss table from file
TGraph* LoadELoss(const char* filename) {
TGraph* g = new TGraph(filename, "%lg %lg");
return g;
}
bool IsDeadAnode(int id){
static std::set<int> dead = {}; // add dead anode IDs here, 0-23
return dead.count(id);
}
bool IsDeadCathode(int id){
static std::set<int> dead = {}; // add dead cathode IDs here, 0-23
return dead.count(id);
}
bool IsDeadSX3(int id){
static std::set<int> dead = {}; // add dead SX3 IDs here, 0-23 1,7,9,3
return dead.count(id);
}
static std::set<pair<int,int>> ReactionProductb = { {1,1} }; // add reaction product b (light particle) A,Z pairs here, e.g. {1,1} for proton, {4,2} for alpha
int main(int argc, char **argv){
printf("=========================================\n");
printf("=== ANASEN Monte Carlo ===\n");
printf("=========================================\n");
// number of events can be overridden from command line
int numEvent = 1000000;
if( argc >= 2 ) numEvent = atoi(argv[1]);
// load energy loss tables (assume units: E in MeV, dE/dx in MeV/(mg/cm^2), density in mg/cm^3)
TGraph* elossAlpha = LoadELoss("../ELoss/E_vs_x_alpha.dat"); // for light particle (alpha)
TGraph* elossProton = LoadELoss("../ELoss/E_vs_x_proton.dat"); // for heavy particle (proton)
TGraph *invgAlpha = new TGraph(elossAlpha->GetN(), elossAlpha->GetY(), elossAlpha->GetX());
TGraph *invgProton = new TGraph(elossProton->GetN(), elossProton->GetY(), elossProton->GetX());
//Plot energy loss tables (sanity check), vis will not work if this is ran without X11 display (e.g. on cluster), so comment out if running in headless mode
auto c1 = new TCanvas("c1", "Graph Example", 800, 600);
auto g = elossAlpha;
g->SetTitle("Energy Loss Table (Alpha);cm;Kinetic Energy (MeV)");
g->Draw("ALP");
g->SetLineColor(kRed);
//c1->SetLogy();
//c1->SetLogx();
c1->Print("eloss_alpha.png");
auto c2 = new TCanvas("c2", "Graph Example", 800, 600);
auto g2 = elossProton;
g2->SetTitle("Energy Loss Table (Proton);cm;Kinetic Energy (MeV)");
g2->Draw("ALP");
g2->SetLineColor(kBlue);
c2->Print("eloss_proton.png");
// Reaction setup: projectile + target configuration, energy, and product IDs
TransferReaction transfer;
transfer.SetA(14, 7, 0); // e.g., 24Mg (Z=12) with 0 excitation
transfer.SetIncidentEnergyAngle((42.82/14.0), 0, 0); // arguments are KEA in MeV/u, theta and phi in degree
transfer.Seta( 4, 2); // identify reaction product a in internal indexing e.g., 4He (alpha)
transfer.Setb(ReactionProductb.begin()->first, ReactionProductb.begin()->second); // identify reaction product b e.g., 1H (proton)
transfer.SetB(17, 8); // identify reaction product B e.g., 23Na (Z=11)
// TODO add alpha source or alternative reaction channel selection
// Excited state lists (target and projectile/excited products)
std::vector<float> ExAList = {0}; // projectile excitation states in MeV
std::vector<float> ExList = {0}; // target excitation states in MeV
// define vertex position uniform distribution ranges (mm)
double vertexXRange[2] = { -5, 5}; // mm
double vertexYRange[2] = { -5, 5};
double vertexZRange[2] = { -100, 100};
// detector resolution / uncertainty parameters
double sigmaSX3_W = -1; // mm, if < 0 use mid-point (no spread in SX3 horizontal dimension)
double sigmaSX3_L = 3; // mm, vertical spread for SX3
double sigmaPW_A = 0; // normalized anode uncertainty term (0-1)
double sigmaPW_C = 0; // normalized cathode uncertainty term (0-1)
// status printout
printf("------------ Vertex :\n");
printf("X : %7.2f - %7.2f mm\n", vertexXRange[0], vertexXRange[1]);
printf("Y : %7.2f - %7.2f mm\n", vertexYRange[0], vertexYRange[1]);
printf("Z : %7.2f - %7.2f mm\n", vertexZRange[0], vertexZRange[1]);
printf("------------ Uncertainty :\n");
printf(" SX3 horizontal : %.1f\n", sigmaSX3_W);
printf(" SX3 vertical : %.1f\n", sigmaSX3_L);
printf(" Anode : %.1f mm\n", sigmaPW_A);
printf(" Cathode : %.1f mm\n", sigmaPW_C);
printf(" num_eve : %d \n",numEvent);
// calculates energy/momentum/kinematics constants for transfer reaction
transfer.CalReactionConstant();
int nExA = ExAList.size();
int nEx = ExList.size();
// optional visualization control: pass "vis" as 3rd arg
bool enableVis = (argc >= 3 && strcmp(argv[2], "vis") == 0);
TApplication *app = nullptr;
if(enableVis){
app = new TApplication("anasenVis", &argc, argv);
}
// storage for tracks during simulation (for visualization)
std::vector<TVector3> visTrackVertex, visTrackDir, visTrackHitPos;
std::vector<std::pair<int,int>> visTrackWires; // {anodeID, cathodeID}
// create detector representation in memory
ANASEN * anasen = new ANASEN(); // top-level detector object
SX3 * sx3 = anasen->GetSX3(); // silicon array part
PW * pw = anasen->GetPW(); // proportional wire chamber part
// output file + tree
TString saveFileName = "SimAnasen1.root";
printf("\e[32m#################################### building Tree in %s\e[0m\n", saveFileName.Data());
TFile * saveFile = new TFile(saveFileName, "recreate");
TTree * tree = new TTree("tree", "tree");
// beam and CM variables saved in tree
double KEA;
tree->Branch("beamKEA", &KEA, "beamKEA/D");
double thetaCM, phiCM;
tree->Branch("thetaCM", &thetaCM, "thetaCM/D");
tree->Branch("phiCM", &phiCM, "phiCM/D");
// outgoing particles in lab frame (light/heavy)
double thetab, phib, Tb;
double thetaB, phiB, TB;
double dEb;
double dEB;
std::array<double, 2> T;
tree->Branch("thetab", &thetab, "thetab/D"); // polar angle of light particle in lab frame
tree->Branch("phib", &phib, "phib/D"); // azimuthal angle of light particle in lab frame
tree->Branch("Tb", &Tb, "Tb/D"); // kinetic energy of light particle at vertex (before energy loss)
tree->Branch("thetaB", &thetaB, "thetaB/D");
tree->Branch("phiB", &phiB, "phiB/D");
tree->Branch("TB", &TB, "TB/D"); // kinetic energy of heavy particle at vertex (before energy loss)
tree->Branch("dEb", &dEb, "dEb/D");
tree->Branch("dEB", &dEB, "dEB/D"); // placeholder for heavy particle energy loss, currently set equal to light particle loss for simplicity
tree->Branch("T", &T, "T/D"); // placeholder for true Q-value, currently set to 0 for simplicity
// excitation state identifiers
int ExAID;
double ExA;
tree->Branch("ExAID", &ExAID, "ExAID/I"); // projectile excitation state ID
tree->Branch("ExA", &ExA, "ExA/D"); // projectile excitation energy in MeV
int ExID;
double Ex;
tree->Branch("ExID", &ExID, "ExID/I"); // target excitation state ID
tree->Branch("Ex", &Ex, "Ex/D"); // target excitation energy in MeV
// true vertex position in target volume
double vertexX, vertexY, vertexZ;
tree->Branch("vX", &vertexX, "VertexX/D"); // true vertex X position in mm
tree->Branch("vY", &vertexY, "VertexY/D"); // true vertex Y position in mm
tree->Branch("vZ", &vertexZ, "VertexZ/D"); // true vertex Z position in mm
// reconstructed SX3 hit position
double sx3X, sx3Y, sx3Z;
tree->Branch("sx3X", &sx3X, "sx3X/D"); // reconstructed X position from SX3 (with optional smearing)
tree->Branch("sx3Y", &sx3Y, "sx3Y/D"); // reconstructed Y position from SX3 (with optional smearing)
tree->Branch("sx3Z", &sx3Z, "sx3Z/D"); // reconstructed Z position from SX3 (with optional smearing)
// PW nearest and next nearest wires
int anodeID[2], cathodeID[2];
tree->Branch("aID", anodeID, "anodeID/I"); // anodeID[0] is nearest anode wire, anodeID[1] is next nearest anode wire
tree->Branch("cID", cathodeID, "cathodeID/I"); // cathodeID[0] is nearest cathode wire, cathodeID[1] is next nearest cathode wire
// distances to nearest wires
double anodeDist[2], cathodeDist[2];
tree->Branch("aDist", anodeDist, "anodeDist/D");
tree->Branch("cDist", cathodeDist, "cathodeDist/D");
// SX3 channel assignment and Z fraction (depth) information
int sx3ID, sx3Up, sx3Dn, sx3Bk;
double sx3ZFrac;
tree->Branch("sx3ID", &sx3ID, "sx3ID/I");
tree->Branch("sx3Up", &sx3Up, "sx3Up/I");
tree->Branch("sx3Dn", &sx3Dn, "sx3Dn/I");
tree->Branch("sx3Bk", &sx3Bk, "sx3Bk/I");
tree->Branch("sx3ZFrac", &sx3ZFrac, "sx3ZFrac/D");
// reconstructed angles from PW track fit, method 1 and 2
double reTheta, rePhi;
tree->Branch("reTheta", &reTheta, "reconstucted_theta/D");
tree->Branch("rePhi", &rePhi, "reconstucted_phi/D");
double reTheta1, rePhi1;
tree->Branch("reTheta1", &reTheta1, "reconstucted_theta1/D");
tree->Branch("rePhi1", &rePhi1, "reconstucted_phi1/D");
// reconstructed vertex Z from PW fit
double z0;
tree->Branch("z0", &z0, "reconstucted_Z/D");
TTree* tree2 = tree->CloneTree(0);
tree2->SetName("tree2");
//========timer
TBenchmark clock;
bool shown ;
clock.Reset();
clock.Start("timer");
shown = false;
int ELossTotal = 0;
//================================= Calculate event loop
for( int i = 0; i < numEvent ; i++){
// randomly sample target/projectile excitations
ExAID = gRandom->Integer(nExA);
ExA = ExAList[ExAID];
transfer.SetExA(ExA);
ExID = gRandom->Integer(nEx);
Ex = ExList[ExID];
transfer.SetExB(Ex);
// recalc kinematic constants for chosen states
transfer.CalReactionConstant();
// isotropic CM direction
thetaCM = TMath::ACos(2 * gRandom->Rndm() - 1) ;
phiCM = (gRandom->Rndm() - 0.5) * TMath::TwoPi();
//==== Calculate reaction kinematics in lab frame
TLorentzVector * output = transfer.Event(thetaCM, phiCM); // returns array of outputs
TLorentzVector Pb = output[2]; // light particle or product A
TLorentzVector PB = output[3]; // heavy particle or product B
thetab = Pb.Theta() * TMath::RadToDeg();
thetaB = PB.Theta() * TMath::RadToDeg();
Tb = (Pb.E() - Pb.M()); // kinetic energy of light particle at vertex (before energy loss) units of MeV
TB = (PB.E() - PB.M());
T[0] = Tb;
T[1] = TB;
//if (Tb < 1.5) {
// //skip event if light particle energy after loss is below detection threshold of 1.5 MeV
// continue;
//}
phib = Pb.Phi() * TMath::RadToDeg();
phiB = PB.Phi() * TMath::RadToDeg();
// vertex position in target volume
vertexX = (vertexXRange[1]- vertexXRange[0])*gRandom->Rndm() + vertexXRange[0];
vertexY = (vertexYRange[1]- vertexYRange[0])*gRandom->Rndm() + vertexYRange[0];
vertexZ = (vertexZRange[1]- vertexZRange[0])*gRandom->Rndm() + vertexZRange[0];
TVector3 vertex(vertexX, vertexY, vertexZ);
// set direction vector from lab angle
TVector3 dir(1, 0, 0);
dir.SetTheta(thetab * TMath::DegToRad());
dir.SetPhi(phib * TMath::DegToRad());
// run detector response models for PW and SX3
pw->FindWireID(vertex, dir, false);
sx3->FindSX3Pos(vertex, dir, false);
PWHitInfo hitInfo = pw->GetHitInfo();
anodeID[0] = hitInfo.nearestWire.first; // nearest anode wire ID
cathodeID[0] = hitInfo.nearestWire.second; // nearest cathode wire ID
anodeID[1] = hitInfo.nextNearestWire.first; // next nearest anode wire ID
cathodeID[1] = hitInfo.nextNearestWire.second; // next nearest cathode wire ID
anodeDist[1] = hitInfo.nextNearestDist.first; // distance to next nearest anode wire
cathodeDist[1] = hitInfo.nextNearestDist.second; // distance to next nearest cathode wire
if(IsDeadAnode(anodeID[0])) continue;
if(IsDeadCathode(cathodeID[0])) continue;
// SX3 hit channel info and depth fraction
sx3ID = sx3->GetID();
if(IsDeadSX3(sx3ID)) continue;
anodeDist[0] = hitInfo.nearestDist.first; // distance to nearest anode wire
cathodeDist[0] = hitInfo.nearestDist.second; // distance to nearest cathode wire
if( sx3ID >= 0 ){
sx3Up = sx3->GetChUp();
sx3Dn = sx3->GetChDn();
sx3Bk = sx3->GetChBk();
sx3ZFrac = sx3->GetZFrac();
// apply intrinsic detector resolution to true SX3 hit position
// for no smearing comment out and use GetHitPos();
TVector3 hitPos = sx3->GetHitPosWithSigma(sigmaSX3_W, sigmaSX3_L);
sx3X = hitPos.X();
sx3Y = hitPos.Y();
sx3Z = hitPos.Z();
// store track data for visualization if enabled
if(enableVis){
visTrackVertex.push_back(vertex);
visTrackDir.push_back(dir);
visTrackHitPos.push_back(hitPos);
visTrackWires.push_back({anodeID[0], cathodeID[0]});
}
// reconstruct track from PW readings + SX3 hit
pw->CalTrack(hitPos, anodeID[0], cathodeID[0], false);
reTheta = pw->GetTrackTheta() * TMath::RadToDeg();
rePhi = pw->GetTrackPhi() * TMath::RadToDeg();
// alternative track algorithm with uncertainty parameters
pw->CalTrack2(hitPos, hitInfo, sigmaPW_A, sigmaPW_C, false);
reTheta1 = pw->GetTrackTheta() * TMath::RadToDeg();
rePhi1 = pw->GetTrackPhi() * TMath::RadToDeg();
z0 = pw->GetZ0();
dEb = 0;
dEB = 0;
tree->Fill();
//Energy loss
double dl = (hitPos - vertex).Mag(); // path length in units of cm
if (numEvent <= 100){
//printf("Event %d: Ekin before loss = %f MeV, distance = %f cm\n", i, Tb, dl);
//printf("Total T before loss: %f MeV\n", T);
}
double tb_temp = Tb;
dEb = tb_temp - Tb; // total energy loss
if (ReactionProductb.count({4, 2})){ // if light particle is alpha, use alpha energy loss table
double x0b = invgAlpha->Eval(Tb);
x0b = x0b + dl;
Tb = elossAlpha->Eval(x0b);
} else if (ReactionProductb.count({1, 1})){ // if light particle is proton, use proton energy loss table
double x0b = invgProton->Eval(Tb);
x0b = x0b + dl;
Tb = elossProton->Eval(x0b);
} else {
// for other particle types, can add additional energy loss tables or use a generic approximation
// for now, we will just apply a simple linear energy loss as a placeholder
double dE_dx = 5; // MeV/cm, placeholder value for energy loss per unit length
Tb = Tb - dE_dx * dl;
}
//if (Tb < 0) {
// Tb = TMath::QuietNaN();
//}
dEb = tb_temp - Tb; // total energy loss
// fill tree2 with energy loss adjusted data
//Fill T so it can make a histogram of both Tb and TB in root script
T[0] = Tb;
T[1] = 0;
//to plot both as one histogram in root, can use tree2->Draw("T(0)"); for light particle and tree2->Draw("T(1)") for heavy particle
tree2->Fill();
if (numEvent <= 10){
//printf("Event %d: Tb after energy loss = %f MeV, energy loss = %f MeV\n", i, Tb, tb_temp - Tb);
} //to give in scientific notation, use %e instead of %f in the printf format string. For example: printf("Event %d: Tb after energy loss = %e MeV, energy loss = %e MeV\n", i, Tb, tb_temp - Tb);
ELossTotal += (tb_temp - Tb);
}else{
// no valid SX3 hit: mark clearly invalid
sx3Up = -1;
sx3Dn = -1;
sx3Bk = -1;
sx3ZFrac = TMath::QuietNaN();
sx3X = TMath::QuietNaN();
sx3Y = TMath::QuietNaN();
sx3Z = TMath::QuietNaN();
reTheta = TMath::QuietNaN();
rePhi = TMath::QuietNaN();
reTheta1 = TMath::QuietNaN();
rePhi1 = TMath::QuietNaN();
z0 = TMath::QuietNaN();
dEb = TMath::QuietNaN();
dEB = TMath::QuietNaN();
//Tb = -12354567; // mark kinetic energy as invalid for no hit case
// fill tree with original data (no energy loss for these events)
//comment out tree fill for no hit case
//tree->Fill();
//tree2->Fill();
}
//#################################################################### Timer
// measure elapsed real time and print progress roughly every 10 sec
clock.Stop("timer");
Double_t time = clock.GetRealTime("timer");
clock.Start("timer");
if ( !shown ) {
if (fmod(time, 10) < 1 ){
printf( "%10d[%2d%%]| %8.2f sec | expect: %5.1f min \n", i, TMath::Nint((i+1)*100./numEvent), time , numEvent*time/(i+1)/60);
shown = 1;
}
} else {
if (fmod(time, 10) > 9 ){
shown = 0;
}
}
}
// write results to ROOT file and close
//tree->Write();
//tree2->Write();
tree->Write("", TObject::kOverwrite);
tree2->Write("", TObject::kOverwrite);
int count = tree->GetEntries();
int count2 = tree2->GetEntries();
saveFile->Close();
printf("=============== done. saved as %s. tree entries: %d, tree2 entries: %d\n", saveFileName.Data(), count, count2);
printf("Total energy loss across all events: %f MeV\n", (double)ELossTotal);
printf("Average energy loss across events: %f MeV\n", (double)ELossTotal / count);
if(enableVis){ // to enable visualization, run with 3rd argument "vis", e.g. "./anasenMC 1000 vis"
printf("Displaying geometry with %zu tracks from simulation\n", visTrackVertex.size());
// Build full geometry with all wires
anasen->DrawAnasen(0, 23, 0, 23, -1, true);
// Add all stored tracks to the geometry
TGeoManager *geom = anasen->GetGeoManager();
TGeoVolume *worldBox = anasen->GetWorldBox();
if(geom && worldBox && visTrackVertex.size() > 0){
int trackNodeID = 500; // start node IDs for tracks
for(size_t iTrack = 0; iTrack < visTrackVertex.size(); ++iTrack){
TVector3 vertex = visTrackVertex[iTrack];
TVector3 dir = visTrackDir[iTrack];
TVector3 hitPos = visTrackHitPos[iTrack];
double theta = dir.Theta() * TMath::RadToDeg();
double phi = dir.Phi() * TMath::RadToDeg();
// Add a line marker at the vertex
TGeoVolume *startMarker = geom->MakeSphere("startMarker", 0, 0, 2.0);
startMarker->SetLineColor(kBlack);
worldBox->AddNode(startMarker, trackNodeID,
new TGeoCombiTrans(vertex.X(), vertex.Y(), vertex.Z(),
new TGeoRotation("rot", 0, 0, 0)));
trackNodeID++;
// Add track line from vertex toward hit position
TGeoVolume *trackLine = geom->MakeTube("trackLine", 0, 0, 0.08, 150.0);
trackLine->SetLineColor(kBlue);
worldBox->AddNode(trackLine, trackNodeID,
new TGeoCombiTrans(vertex.X(), vertex.Y(), vertex.Z(),
new TGeoRotation("rotTrack", phi + 90, theta, 0)));
trackNodeID++;
// Add hit position marker
TGeoVolume *hitMarker = geom->MakeSphere("hitMarker", 0, 0, 2.0);
hitMarker->SetLineColor(kRed);
worldBox->AddNode(hitMarker, trackNodeID,
new TGeoCombiTrans(hitPos.X(), hitPos.Y(), hitPos.Z(),
new TGeoRotation("rotHit", 0, 0, 0)));
trackNodeID++;
}
// Redraw geometry with all tracks
geom->CloseGeometry();
geom->SetVisLevel(4);
worldBox->Draw("ogle");
}
if(app){
printf("Entering ROOT event loop\n");
app->Run();
}
}
delete anasen;
delete elossAlpha;
delete elossProton;
return 0;
}