added a Bin2Root eventbuilder
This commit is contained in:
parent
8d3f28d864
commit
ee2962d4f9
7
.gitignore
vendored
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7
.gitignore
vendored
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@ -0,0 +1,7 @@
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*.o
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*.fsu
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*.root
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data
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Bin2Root
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263
Bin2Root.cpp
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263
Bin2Root.cpp
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@ -0,0 +1,263 @@
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#include "BinReader.h"
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#include <sys/time.h> /** struct timeval, select() */
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inline unsigned int getTime_us(){
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unsigned int time_us;
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struct timeval t1;
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struct timezone tz;
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gettimeofday(&t1, &tz);
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time_us = (t1.tv_sec) * 1000 * 1000 + t1.tv_usec;
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return time_us;
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}
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#include "TFile.h"
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#include "TTree.h"
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#include "TMacro.h"
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#define MAX_TRACE_LENGTH 2000
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#define MAX_MULTI 100
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#define NMINARG 5
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#define debug 0
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//^#############################################################
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//^#############################################################
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int main(int argc, char **argv) {
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printf("=========================================\n");
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printf("=== CoMPASS Binary to root ===\n");
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printf("=========================================\n");
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if (argc < NMINARG) {
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printf("Incorrect number of arguments:\n");
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printf("%s [timeWindow] [withTrace] [outFile] [inFile1] [inFile2] .... \n", argv[0]);
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printf(" timeWindow : in ns, -1 = no event building \n");
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printf(" withTrace : 0 for no trace, 1 for trace \n");
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printf(" outFile : output file name\n");
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printf("\n");
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printf(" Example: %s -1 0 '\\ls -1 *001*.bin' (no event build, no trace, no verbose)\n", argv[0]);
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printf(" %s 100 0 '\\ls -1 *001*.bin' (event build with 100 ns, no trace, no verbose)\n", argv[0]);
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printf("\n\n");
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return 1;
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}
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unsigned int runStartTime = getTime_us();
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///============= read input
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long timeWindow = atoi(argv[1]);
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bool traceOn = atoi(argv[2]);
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TString outFileName = argv[3];
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const int nFile = argc - NMINARG + 1;
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TString inFileName[nFile];
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for( int i = 0 ; i < nFile ; i++){ inFileName[i] = argv[i + NMINARG -1];}
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/// Form outFileName;
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// TString outFileName = inFileName[0];
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// int pos = outFileName.Last('/');
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// pos = outFileName.Index("_", pos+1); // find next "_"
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// pos = outFileName.Index("_", pos+1); // find next "_"
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// if( nFile == 1 ) pos = outFileName.Index("_", pos+1); // find next "_", S/N
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// outFileName.Remove(pos); // remove the rest
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// outFileName += "_" + ( timeWindow >= 0 ? std::to_string(timeWindow) : "single");
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// outFileName += ".root";
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printf("-------> Out file name : %s \n", outFileName.Data());
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printf("=========================================\n");
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printf(" Time Window = %ld ns = %.1f us\n", timeWindow, timeWindow/1000.);
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printf(" Include Trace = %s\n", traceOn ? "Yes" : "No");
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printf(" Max multiplity = %d hits/event (hard coded)\n", MAX_MULTI);
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if( traceOn ) printf(" Max Trace Length = %d (hard coded)\n", MAX_TRACE_LENGTH);
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printf("========================================= Number of Files : %d \n", nFile);
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unsigned long long int totalHitCount = 0;
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BinReader reader[nFile];
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for(int i = 0; i < nFile; i++ ){
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printf(">>>>>>>> %2d | %s \n", i, inFileName[i].Data());
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reader[i].OpenFile(inFileName[i]);
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reader[i].ScanNumHit();
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totalHitCount += reader[i].GetNumHit();
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}
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printf("======================= total Hit Count : %llu\n", totalHitCount);
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printf("========================================= Initializing tree...\n");
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unsigned long long evID = 0;
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unsigned int multi = 0;
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unsigned short sn[MAX_MULTI] = {0};
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unsigned short ch[MAX_MULTI] = {0};
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unsigned short e[MAX_MULTI] = {0};
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unsigned short e2[MAX_MULTI] = {0};
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unsigned long long e_t[MAX_MULTI] = {0};
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unsigned short traceLength[MAX_MULTI];
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short trace[MAX_MULTI][MAX_TRACE_LENGTH];
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TFile * outRootFile = new TFile(outFileName, "recreate");
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TTree * tree = new TTree("tree", outFileName);
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tree->Branch("evID", &evID, "event_ID/l");
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tree->Branch("multi", &multi, "multi/i");
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tree->Branch("sn", sn, "sn[multi]/s");
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tree->Branch("ch", ch, "ch[multi]/s");
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tree->Branch("e", e, "e[multi]/s");
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tree->Branch("e2", e2, "e2[multi]/s");
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tree->Branch("e_t", e_t, "e_t[multi]/l");
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tree->Branch("traceLength", traceLength, "traceLength[multi]/s");
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if( traceOn ) {
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tree->Branch("trace", trace,"trace[multi][MAX_TRACE_LENGTH]/S");
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tree->GetBranch("trace")->SetCompressionSettings(205);
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}
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printf("========================================= Event Building ...\n");
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//set TimeWindow to ps;
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timeWindow *= 1000;
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// record the first time stamp and last time stamp
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unsigned long long tStart = 0;
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unsigned long long tEnd = 0;
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unsigned long long t0 = -1;
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short g0 = 0 ;
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int nFileFinished = 0;
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multi = 0;
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evID = 0;
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std::vector<Data> events;
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long long ID[nFile]; // filled hit ID
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for( int i = 0 ; i < nFile ; i++ ) {
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reader[i].ReadBlock();
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ID[i] = -1;
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}
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unsigned long long hitProcessed = 0;
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do{
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if( debug ) printf("################################ ev build %llu \n", evID);
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events.clear();
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// //find earliest time group;
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t0 = -1;
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for( short i = 0; i < nFile; i++){
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if( debug ) printf("NNNN %d | ID: %lld, %lld, %lld \n", i, ID[i], reader[i].GetHitID(), reader[i].GetNumHit() );
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if( ID[i] + 1 >= reader[i].GetNumHit()) continue;
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// if( ID[i] >= reader[i].GetHitID() ) reader[i].ReadBlock();
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if( debug ) reader[i].data.Print();
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if( reader[i].data.TimeStamp < t0 ) {
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t0 = reader[i].data.TimeStamp;
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g0 = i;
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}
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}
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if( evID == 0 ) tStart = t0;
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if( debug ) printf("First timestamp is %llu, file ID : %u\n", t0, g0);
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for( short i = 0; i < nFile; i++){
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short ig = (i + g0 ) % nFile;
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if( ID[i] + 1 >= reader[ig].GetNumHit() ) continue;
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if( timeWindow >= 0 ){
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do{
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if( (long int)( reader[ig].data.TimeStamp - t0) <= timeWindow ){
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events.push_back(reader[ig].data);
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ID[ig] ++;
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}else{
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break;
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}
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}while( reader[ig].ReadBlock() == 1 );
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}else{
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events.push_back(reader[ig].data);
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ID[ig] ++;
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reader[ig].ReadBlock();
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}
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if( timeWindow < 0) break;
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}
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if( events.size() > 1 ){
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std::sort(events.begin(), events.end(), [](const Data& a, const Data& b) {
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return a.TimeStamp < b.TimeStamp;
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});
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}
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tEnd = events.back().TimeStamp;
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hitProcessed += events.size();
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if( hitProcessed % (traceOn ? 10000 : 10000) == 0 ) printf("hit Porcessed %llu/%llu hit....%.2f%%\n\033[A\r", hitProcessed, totalHitCount, hitProcessed*100./totalHitCount);
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multi = events.size() ;
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if( events.size() >= MAX_MULTI ) {
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printf("\033[31m event %lld has size = %d > MAX_MULTI = %d \033[0m\n", evID, multi, MAX_MULTI);
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multi = MAX_MULTI;
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}
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if( debug ) printf("=================================== filling data | %u \n", multi);
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for( size_t p = 0; p < multi ; p ++ ) {
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if( debug ) {printf("%4zu | ", p); events[p].Print();}
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sn[p] = events[p].BoardID;
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ch[p] = events[p].Channel;
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e[p] = events[p].Energy;
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e2[p] = events[p].Energy_short;
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e_t[p] = events[p].TimeStamp;
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traceLength[p] = events[p].NSample;
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if( traceOn ){
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if( traceLength[p] > MAX_TRACE_LENGTH ) {
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printf("\033[31m event %lld has trace length = %d > MAX_TRACE_LENGTH = %d \033[0m\n", evID, traceLength[p], MAX_TRACE_LENGTH);
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traceLength[p] = MAX_TRACE_LENGTH;
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}
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for( int hh = 0; hh < traceLength[p]; hh++){
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trace[p][hh] = events[p].Trace[hh];
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}
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}
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}
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outRootFile->cd();
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tree->Fill();
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// tree->Write();
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multi = 0;
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evID ++;
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nFileFinished = 0;
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for( int i = 0; i < nFile; i++ ){
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// printf(" %d | %lld %lld \n", i, ID[i], reader[i].GetNumHit() );
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if( ID[i] + 1 >= reader[i].GetNumHit() ) nFileFinished ++ ;
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}
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if( debug ) printf(" >>>> nFileFinished : %d \n", nFileFinished);
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if( events.size() == 0 ) break;
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}while( nFileFinished < nFile );
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tree->Write();
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unsigned int runEndTime = getTime_us();
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double runTime = (runEndTime - runStartTime) * 1e-6;
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printf("######################################### finished.\n");
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printf(" event building time = %.2f sec = %.2f min\n", runTime, runTime/60.);
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// printf(" total events built = %llu by event builder (%llu in tree)\n", evID, tree->GetEntriesFast());
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printf(" total hit processed = %llu\n", hitProcessed);
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printf(" total events built = %llu by event builder\n", evID);
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double tDuration_sec = (tEnd - tStart) * 1e-12;
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printf(" first timestamp = %20llu ps\n", tStart);
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printf(" last timestamp = %20llu ps\n", tEnd);
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printf(" total data duration = %.2f sec = %.2f min\n", tDuration_sec, tDuration_sec/60.);
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printf("========================================> saved to %s \n", outFileName.Data());
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TMacro info;
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info.AddLine(Form("tStart= %20llu ns",tStart));
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info.AddLine(Form(" tEnd= %20llu ns",tEnd));
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info.Write("info");
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outRootFile->Close();
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return 0;
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}
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71
BinReader.h
71
BinReader.h
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@ -44,7 +44,11 @@ struct Data{
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printf("header : 0x%X \n", Header);
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printf(" Board : %u , Channel : %u\n", BoardID, Channel);
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printf("Energy : %u , TimeStamp : %lu ps\n", Energy, TimeStamp);
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if( Header & 4 ) {
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printf("Energy : %u, Energy2 : %u, TimeStamp : %lu ps\n", Energy, Energy_short, TimeStamp);
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}else{
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printf("Energy : %u, TimeStamp : %lu ps\n", Energy, TimeStamp);
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}
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printf(" Flag : 0x%X\n", Flags);
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if( (Header & 0x8 ) >= 1 ){ /// is waevform exist
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printf(" Wave form code : %d , nSample : %d\n", WaveformCode, NSample);
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@ -68,8 +72,8 @@ class BinReader{
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long int inFilePos;
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bool endOfFile;
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bool isOpened;
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Long64_t blockID;
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long int nBlock;
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Long64_t hitID;
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long int numHit;
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TBenchmark gClock;
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@ -91,15 +95,15 @@ class BinReader{
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void UpdateFileSize();
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bool IsEndOfFile();
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bool IsOpen() {return isOpened;}
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long int GetFilePos() {return inFilePos;}
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long int GetFileSize() {return inFileSize;}
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Long64_t GetBlockID() {return blockID;}
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Long64_t GetNumberOfBlock() {return nBlock;}
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bool IsOpen() const {return isOpened;}
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long int GetFilePos() const {return inFilePos;}
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long int GetFileSize() const {return inFileSize;}
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Long64_t GetHitID() const {return hitID;}
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Long64_t GetNumHit() const {return numHit;}
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int ReadBlock(int skipTrace = 0); /// 0 = default, fill waveform if any. slow
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/// 1 = no fill waveform, fast
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void ScanNumberOfBlock();
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void ScanNumHit();
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void JumptoPrecent(int precent); ///this is offset by 1 block
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void PrintStatus(int mod);
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@ -113,8 +117,8 @@ BinReader::BinReader(){
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inFileSize = 0;
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inFilePos = 0;
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nBlock = 0;
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blockID = -1;
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numHit = 0;
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hitID = -1;
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endOfFile = false;
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isOpened = false;
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@ -133,8 +137,8 @@ BinReader::BinReader(TString inFileName){
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inFileSize = 0;
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inFilePos = 0;
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nBlock = 0;
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blockID = -1;
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numHit = 0;
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hitID = -1;
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endOfFile = false;
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isOpened = false;
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@ -180,8 +184,8 @@ void BinReader::CloseFile(){
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data.Clear();
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inFileSize = 0;
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inFilePos = 0;
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nBlock = 0;
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blockID = -1;
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numHit = 0;
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hitID = -1;
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endOfFile = false;
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};
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@ -193,12 +197,13 @@ void BinReader::UpdateFileSize(){
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}
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bool BinReader::IsEndOfFile() {
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int haha = feof(inFile);
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return haha > 0 ? true: false;
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if( endOfFile ) return true;
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return feof(inFile) > 0 ? true: false;
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}
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template <typename T> int BinReader::FillData(T * dataItem){
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if ( fread(dataItem, sizeof(*dataItem), 1, inFile) != 1 ) {
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printf("!!!!! problem for reading data\n");
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endOfFile = IsEndOfFile();
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return -1;
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}
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@ -238,7 +243,7 @@ int BinReader::ReadBlock(int skipTrace){
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for( int i = 0; i < data.NSample; i++ ){
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uint16_t haha;
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fread(&haha, 2, 1, inFile);
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size_t dummy = fread(&haha, 2, 1, inFile);
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data.Trace.push_back(haha);
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}
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@ -247,37 +252,37 @@ int BinReader::ReadBlock(int skipTrace){
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}
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}
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blockID ++;
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hitID ++;
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inFilePos = ftell(inFile);
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if( inFilePos >= inFileSize ) endOfFile = true;
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return 1;
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}
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void BinReader::ScanNumberOfBlock(){
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void BinReader::ScanNumHit(){
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nBlock = 0;
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numHit = 0;
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int count = 0;
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while( ReadBlock(1) != -1 ){
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nBlock ++;
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numHit ++;
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int haha = (inFilePos*10/inFileSize)%10;
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if( haha == count ) {
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inFilePosPrecent[count] = inFilePos;
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blockIDPrecent[count] = blockID;
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blockIDPrecent[count] = hitID;
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count++;
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}
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PrintStatus(10000);
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}
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PrintStatus(1);
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printf("\n\n\n");
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printf("scan complete: number of data Block : %ld\n", nBlock);
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inFilePos = 0;
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blockID = -1;
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printf("scan complete: number of data Block : %ld\n", numHit);
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rewind(inFile); ///back to the File begining
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// unsigned short dummy;
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// FillData(&dummy);
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FillData(&data.Header);
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inFilePos = 0;
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hitID = -1;
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endOfFile = false;
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}
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@ -289,19 +294,19 @@ void BinReader::JumptoPrecent(int precent){
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}
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fseek(inFile, inFilePosPrecent[precent], SEEK_SET);
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blockID = blockIDPrecent[precent];
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hitID = blockIDPrecent[precent];
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}
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void BinReader::PrintStatus(int mod){
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///==== event stats, print status every 10000 events
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if ( blockID % mod == 0 ) {
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if ( hitID % mod == 0 ) {
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UpdateFileSize();
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gClock.Stop("timer");
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double time = gClock.GetRealTime("timer");
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gClock.Start("timer");
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printf("Total measurements: \x1B[32m%llu \x1B[0m\nReading Pos: \x1B[32m %.3f/%.3f GB\x1B[0m\nTime used:%3.0f min %5.2f sec\033[A\033[A\r",
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blockID, inFilePos/(1024.*1024.*1024.), inFileSize/1024./1024./1024, TMath::Floor(time/60.), time - TMath::Floor(time/60.)*60.);
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printf("Hit ID: \x1B[32m%llu \x1B[0m\nReading Pos: \x1B[32m %.3f/%.3f GB\x1B[0m\nTime used:%3.0f min %5.2f sec\033[A\033[A\r",
|
||||
hitID, inFilePos/(1024.*1024.*1024.), inFileSize/1024./1024./1024, TMath::Floor(time/60.), time - TMath::Floor(time/60.)*60.);
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
24
Makefile
Normal file
24
Makefile
Normal file
|
|
@ -0,0 +1,24 @@
|
|||
########################################################################
|
||||
#
|
||||
#
|
||||
#########################################################################
|
||||
|
||||
CC = g++
|
||||
|
||||
COPTS = -fPIC -DLINUX -O2 -std=c++17 -lpthread
|
||||
# COPTS = -fPIC -DLINUX -g -O0 -Wall -std=c++17 -lpthread
|
||||
|
||||
ROOTLIBS = `root-config --cflags --glibs`
|
||||
|
||||
ALL = Bin2Root
|
||||
|
||||
#########################################################################
|
||||
|
||||
all : $(ALL)
|
||||
|
||||
clean :
|
||||
/bin/rm -f $(OBJS) $(ALL)
|
||||
|
||||
Bin2Root : Bin2Root.cpp BinReader.h
|
||||
@echo "--------- making Bin2Root"
|
||||
$(CC) $(COPTS) -o Bin2Root Bin2Root.cpp BinReader.h $(ROOTLIBS)
|
||||
77
test.C
77
test.C
|
|
@ -6,6 +6,9 @@
|
|||
***************************************/
|
||||
|
||||
#include "BinReader.h"
|
||||
#include "TH1.h"
|
||||
#include "TStyle.h"
|
||||
#include "TCanvas.h"
|
||||
|
||||
#define NChannel 16
|
||||
|
||||
|
|
@ -13,46 +16,64 @@ TH1I * hBoard;
|
|||
TH1I * hChannel;
|
||||
TH1I * he[NChannel];
|
||||
|
||||
BinReader * reader = new BinReader("DataR_run_pulser_3.BIN");
|
||||
// BinReader * reader = new BinReader("/home/ryan/ExpData/fsu_testing/testing_014_single.bin");
|
||||
BinReader * reader = new BinReader("data/run_123/UNFILTERED/Data_CH9@V1725S_19555_run_123.BIN");
|
||||
|
||||
void test(){
|
||||
|
||||
reader->ScanNumberOfBlock();
|
||||
// reader->ReadBlock();
|
||||
// reader->data.Print();
|
||||
|
||||
printf("################## Number of data Block : %llu \n", reader->GetNumberOfBlock());
|
||||
reader->ScanNumHit();
|
||||
|
||||
hBoard = new TH1I ("hBoard", "BoardID", 100, 0, 10);
|
||||
hChannel = new TH1I ("hChannel", "Channel", NChannel, 0, NChannel);
|
||||
for( int i = 0 ; i < NChannel ; i++){
|
||||
he[i] = new TH1I(Form("he%0d", i), Form("he%0d", i), 500, 0, 10000);
|
||||
}
|
||||
printf("################## Number of data Block : %llu \n", reader->GetNumHit());
|
||||
|
||||
for( int i = 0; i < reader->GetNumberOfBlock(); i++){
|
||||
unsigned int count = 0;
|
||||
do{
|
||||
reader->ReadBlock();
|
||||
hBoard->Fill( reader->data.BoardID );
|
||||
unsigned short ch = reader->data.Channel;
|
||||
hChannel->Fill( ch);
|
||||
he[ch]->Fill( reader->data.Energy);
|
||||
reader->data.Print();
|
||||
count ++;
|
||||
|
||||
if( i < 10 ) reader->data.Print();
|
||||
}while( !reader->IsEndOfFile() );
|
||||
|
||||
if( i % 5000000 == 0 ) {
|
||||
printf("------- %d \n", i);
|
||||
reader->data.Print();
|
||||
}
|
||||
}
|
||||
printf(">>>>>>>>>>>>>>. count : %ld\n", count);
|
||||
|
||||
gStyle->SetOptStat("neiou");
|
||||
reader->PrintStatus(1);
|
||||
printf("\n\n\n");
|
||||
|
||||
TCanvas * haha = new TCanvas("haha", "haha", 4*400, 5*400);
|
||||
haha->Divide(4,5);
|
||||
|
||||
haha->cd(1); hBoard->Draw();
|
||||
haha->cd(2); hChannel->Draw();
|
||||
// hBoard = new TH1I ("hBoard", "BoardID", 100, 0, 10);
|
||||
// hChannel = new TH1I ("hChannel", "Channel", NChannel, 0, NChannel);
|
||||
// for( int i = 0 ; i < NChannel ; i++){
|
||||
// he[i] = new TH1I(Form("he%0d", i), Form("he%0d", i), 500, 0, 10000);
|
||||
// }
|
||||
|
||||
for( int i = 0; i < 16; i++){
|
||||
haha->cd(i+5);
|
||||
he[i]->Draw();
|
||||
}
|
||||
// for( int i = 0; i < reader->GetNumberOfBlock(); i++){
|
||||
// reader->ReadBlock();
|
||||
// hBoard->Fill( reader->data.BoardID );
|
||||
// unsigned short ch = reader->data.Channel;
|
||||
// hChannel->Fill( ch);
|
||||
// he[ch]->Fill( reader->data.Energy);
|
||||
|
||||
// if( i < 10 ) reader->data.Print();
|
||||
|
||||
// if( i % 5000000 == 0 ) {
|
||||
// printf("------- %d \n", i);
|
||||
// reader->data.Print();
|
||||
// }
|
||||
// }
|
||||
|
||||
// gStyle->SetOptStat("neiou");
|
||||
|
||||
// TCanvas * haha = new TCanvas("haha", "haha", 4*400, 5*400);
|
||||
// haha->Divide(4,5);
|
||||
|
||||
// haha->cd(1); hBoard->Draw();
|
||||
// haha->cd(2); hChannel->Draw();
|
||||
|
||||
// for( int i = 0; i < 16; i++){
|
||||
// haha->cd(i+5);
|
||||
// he[i]->Draw();
|
||||
// }
|
||||
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue
Block a user