use python ExtractXSecPy for extracting xsec. now is cern root independent
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@ -47,5 +47,5 @@
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#82Kr(d,p)83Kr 0 1d3/2 3/2+ 1.220 10MeV/u AK
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#82Kr(d,p)83Kr 0 2s1/2 1/2+ 1.220 10MeV/u AK
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10Be(d,d)10Be 0 none 0+ 0.000 9MeV/u ZZ
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10Be(d,d)10Be 0 none 0+ 0.000 9MeV/u AA
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11C(d,p)12C 3/2- 0p1/2 2+ 4.4 10MeV/u AK
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11C(d,p)12C 3/2- 0p1/2 1+ 15.1 10MeV/u AK
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@ -2,11 +2,13 @@
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import numpy as np
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def extract_xsec(read_file, index_for_elastic=1):
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def extract_xsec(read_file, index_for_elastic):
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# index_for_elastic = 1 ; for Ratio
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# index_for_elastic = 2 ; for Total
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# index_for_elastic = 3 ; for Rutherford
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print("============ Python Extraction Code ==============")
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# --- open file
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try:
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with open(read_file, 'r') as file_in:
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@ -40,8 +42,9 @@ def extract_xsec(read_file, index_for_elastic=1):
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pos = line.find(find_str)
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if pos != -1:
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title.append(line[pos + len(find_str) + 1:])
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pos = title[-1].find("(")
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ex = title[-1][3:pos]
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pos1 = title[-1].find("=")
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pos2 = title[-1].find("(")
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ex = title[-1][pos1+1:pos2]
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Ex.append(float(ex))
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data_xsec.clear()
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num_cal += 1
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@ -93,40 +96,6 @@ def extract_xsec(read_file, index_for_elastic=1):
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start_extract = True
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continue
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# ----- start extracting Xsec
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if start_extract:
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if len(line) < 20:
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continue
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num_angle = num_xsec = None
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if reaction_flag == 1: # Elastics (d,d) or (p,p)
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num_angle = float(line[0:7].strip())
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if index_for_elastic == 1:
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num_xsec = float(line[15:30].strip())
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elif index_for_elastic == 2:
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if len(line) > 60:
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num_xsec = float(line[30:43].strip())
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else:
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num_xsec = -404
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else:
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if len(line) > 60:
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num_xsec = float(line[57:71].strip())
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else:
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num_xsec = -404
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if reaction_flag == 2: # InElastics (d,p) or (p,d)
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if is_float(line[0:7].strip()):
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num_angle = float(line[0:7].strip())
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num_xsec = float(line[7:26].strip())
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else:
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num_angle = -1.0
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num_xsec = -1.0
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if num_angle != num_xsec and num_xsec > 0.:
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if not angle_filled:
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angle.append(num_angle)
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data_xsec.append(num_xsec)
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# ------ find total Xsec, if found stop extraction
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find_str = "dumpdumpdump"
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if reaction_flag == 1 and pre_find_for_elastic:
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@ -136,7 +105,8 @@ def extract_xsec(read_file, index_for_elastic=1):
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pos = line.find(find_str)
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if pos != -1:
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total_xsec.append(float(line[pos + len(find_str):].strip()))
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# print(line)
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total_xsec.append(float(line[pos + len(find_str):-3].strip()))
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print(f"{num_cal:2d} | {title[-1]} | total Xsec(4pi): {total_xsec[-1]} mb")
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data_matrix.append(data_xsec[:])
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angle_filled = True
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@ -145,6 +115,55 @@ def extract_xsec(read_file, index_for_elastic=1):
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pre_find_for_elastic = False
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continue
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# ----- start extracting Xsec
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if start_extract:
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# print(line)
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# print(len(line))
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if len(line) < 80:
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continue
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if line.find("C.M.") > 0 or line.find("ANGLE") > 0:
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continue
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if line.find("INCOMING ELASTIC") > 0 or line.find("LX") > 0 :
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continue
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num_angle = num_xsec = None
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if reaction_flag == 1: # Elastics (d,d) or (p,p)
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num_angle = float(line[0:7].strip())
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if index_for_elastic == 1:
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num_xsec = float(line[15:28].strip())
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elif index_for_elastic == 2:
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if len(line) > 60:
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num_xsec = float(line[29:40].strip())
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else:
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num_xsec = -404
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else:
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if len(line) > 60:
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num_xsec = float(line[57:71].strip())
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else:
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num_xsec = -404
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# print(f"{num_angle}, {num_xsec}")
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if reaction_flag == 2: # InElastics (d,p) or (p,d)
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# print(line)
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# print(line[0:6])
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# print(line[6:19])
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if is_float(line[0:6].strip()):
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num_angle = float(line[0:6].strip())
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num_xsec = float(line[6:19].strip())
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else:
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num_angle = -1.0
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num_xsec = -1.0
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# print(f"{num_angle}, {num_xsec}")
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if num_angle != num_xsec and num_xsec > 0.:
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if not angle_filled:
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angle.append(num_angle)
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data_xsec.append(num_xsec)
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# ================================== summary
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print("====================== Total number of lines read : ", line_num)
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print(f"Angle : {angle_min:5.2f}, {angle_max:5.2f} | step : {angle_step:5.2f}")
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@ -185,15 +204,18 @@ def extract_xsec(read_file, index_for_elastic=1):
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for r in reaction:
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file_out.write(f"#{r}\n")
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file_out.write("Angel\t")
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file_out.write(f"{"Angle":>8}")
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for t in title:
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file_out.write(f"{t:19}")
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file_out.write(f"{t:>40}")
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file_out.write("\n")
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for i in range(len(angle)):
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file_out.write(f"{angle[i]:8.3f}\t")
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for j in range(num_cal):
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file_out.write(f"{data_matrix[j][i]:19.6f}")
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if data_matrix[j][i] > 1e8 :
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file_out.write(f"{data_matrix[j][i]:>40.6e}")
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else:
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file_out.write(f"{data_matrix[j][i]:>40.6f}")
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file_out.write("\n")
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except Exception as e:
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@ -17,6 +17,8 @@ from PyQt6.QtWebEngineWidgets import QWebEngineView
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import plotly.graph_objects as go
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import tempfile
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from ExtractXsecPy import extract_xsec
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class PlotWindow(QWidget):
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def __init__(self, XsecFile):
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super().__init__()
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@ -27,7 +29,7 @@ class PlotWindow(QWidget):
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self.x = []
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self.data = []
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self.headers = []
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self.x, self.data, self.headers = self.read_data(XsecFile)
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self.read_data(XsecFile)
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self.log_scale_checkbox = QCheckBox("Use Log Scale for Y-Axis")
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self.log_scale_checkbox.setChecked(True)
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@ -50,9 +52,9 @@ class PlotWindow(QWidget):
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self.plot_plotly_graph()
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def read_data(self,file_path):
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x = [] # List for the first column
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data = [] # 2D list for other columns
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headers = [] # List to store headers
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self.x = [] # List for the first column
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self.data = [] # 2D list for other columns
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self.headers = [] # List to store headers
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with open(file_path, 'r') as file:
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header_found = False # Flag to indicate if the header has been found
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@ -62,12 +64,7 @@ class PlotWindow(QWidget):
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continue
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if not header_found:
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parts = line.split('ELab')
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elab_parts = [parts[0]] # Start with the first part
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for part in parts[1:]:
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elab_parts.append('ELab' + part) # Prepend 'ELab' to each subsequent part
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headers = elab_parts # Use the split parts as headers
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self.headers = line.split() # Use the split parts as headers
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header_found = True # Set the flag to True to skip this block in future iterations
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# print(f"ELab parts found: {elab_parts}") # Print or process this as needed
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continue
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@ -75,15 +72,15 @@ class PlotWindow(QWidget):
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# Split the line by whitespace
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parts = line.split()
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if len(parts) > 0: # Make sure there is at least one column
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x.append(float(parts[0])) # First column
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self.x.append(float(parts[0])) # First column
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# Append the rest of the columns to data
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if len(data) == 0:
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if len(self.data) == 0:
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# Initialize the data array with the right number of sublists
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data = [[] for _ in range(len(parts) - 1)]
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self.data = [[] for _ in range(len(parts) - 1)]
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for i in range(len(parts) - 1):
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data[i].append(float(parts[i + 1])) # Rest of the columns
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self.data[i].append(float(parts[i + 1])) # Rest of the columns
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return x, data, headers
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# print(self.headers)
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def plot_plotly_graph(self):
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# Create a Plotly figure
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@ -255,7 +252,7 @@ class MyWindow(QMainWindow):
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self.text_edit = QTextEdit()
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self.text_edit.setLineWrapMode(QTextEdit.LineWrapMode.NoWrap)
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font = QFont("Courier New", 8) # You can adjust the size as needed
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font = QFont("Courier New", 10) # You can adjust the size as needed
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self.text_edit.setFont(font)
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self.leStatus = QLineEdit("")
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@ -334,6 +331,8 @@ class MyWindow(QMainWindow):
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def CalDWBA(self):
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self.SaveFile()
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self.BashCommand("cd ../Cleopatra; make;cd ../PyGUIQt6")
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print(" Is Create InFile : " + str(self.chkCreateInFile.isChecked() ))
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@ -348,7 +347,7 @@ class MyWindow(QMainWindow):
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self.BashCommand("../Cleopatra/InFileCreator " + self.DWBAFileName + aMin + aMax + aSize)
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isRunOK = False
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isRunOK = True
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if self.chkRunPtolemy.isChecked() :
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os_name = platform.system()
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@ -358,14 +357,14 @@ class MyWindow(QMainWindow):
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if os_name == "Darwin":
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self.BashCommand("../Cleopatra/ptolemy_mac <" + self.DWBAFileName + ".in>" + " " + self.DWBAFileName + ".out")
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if self.bashResult.returncode == 0 :
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isRunOK = True
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else:
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if self.bashResult.returncode != 0 :
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isRunOK = False
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self.leStatus.setText("Ptolemy Run Error. Should check the out File.")
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if isRunOK and self.chkExtracrXsec.isChecked() and self.file_exists(self.DWBAFileName + ".out") :
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option = str(self.cbXsec.currentIndex())
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self.BashCommand("../Cleopatra/ExtractXSec " + self.DWBAFileName + ".out " + option)
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extract_xsec(self.DWBAFileName + ".out", self.cbXsec.currentIndex())
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# option = str(self.cbXsec.currentIndex())
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# self.BashCommand("../Cleopatra/ExtractXSec " + self.DWBAFileName + ".out " + option)
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if self.chkPlot.isChecked() and self.file_exists(self.DWBAFileName + ".Xsec.txt") :
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if self.A_file_changed_after_B_file(self.DWBAFileName + ".Xsec.txt", self.DWBAFileName + ".out") :
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