PtolemyGUI/dwuck4/extractData.py

535 lines
16 KiB
Python
Executable File

#!/usr/bin/env python3
import sys
filename = sys.argv[1]
if len(sys.argv) < 2:
print("Error: Not enough arguments provided.")
print("Usage: ./{sys.argv[0]} filename")
sys.exit(1)
#####################################################
import numpy as np
import re
import numpy as np
import matplotlib.pyplot as plt
Lmax = None
sa = None
sb = None
def extract_LmaxSaSb(file_path=filename):
global Lmax, sa, sb
with open(file_path, "r") as file:
for i, line in enumerate(file, start=1):
if Lmax is None and "LMAX" in line :
columns = line.split()
Lmax = int(columns[6])
print(f"LMAX = {Lmax}")
if sa != None and sb is None and "2*STR" in line:
columns = line.split()
sb = int(float(columns[-1]))/2.
print(f"Spin out = {sb}")
if sa is None and "2*STR" in line:
columns = line.split()
sa = int(float(columns[-1]))/2.
print(f"Spin In = {sa}")
def extract_BoundState(file_path=filename):
r_data, y_data = [], []
start_line = None
with open(file_path, "r") as file:
for i, line in enumerate(file, start=1):
if "0 R RL,R" in line:
if start_line is None:
start_line = i+1
if len(r_data) > 1 and line[0] == "0" :
start_line = None
break
if start_line != None:
if start_line <= i :
columns = line.split()
if len(columns) >= 2:
r_data.append(float(columns[0])) # Convert to float
y_data.append(float(columns[1]))
return [r_data, y_data]
#-------------------------------------------------------
def extract_DistortedWave(file_path=filename):
if Lmax is None or sa is None or sb is None :
print("Please run the extract_LmaxSaSb() first")
return
r_list = [0.0]
distWaveIn = np.empty((Lmax+1, int(2*(2*sa+1))), dtype=object) # going to be Lmax * (2*sa+1)
distWaveOut = np.empty((Lmax+1, int(2*(2*sb+1))), dtype=object) # going to be Lmax * (2*sa+1)
for i in range(Lmax+1):
for j in range(int(2*(2*sa+1))):
distWaveIn[i, j] = [0.0]
for j in range(int(2*(2*sb+1))):
distWaveOut[i, j] = [0.0]
start_line = None
l_list = []
with open(file_path, "r") as file:
for i, line in enumerate(file, start=1):
if "0R1=" in line:
if start_line is None:
start_line = i+2
columns = line.split()
r_list.append(float(columns[1]))
l_list = []
if len(l_list) > Lmax:
start_line = None
if start_line != None:
if start_line <= i :
# print(line)
if line[0] == "+" :
l = int(line[70:72])
for j in range(int(2*sb+1)):
distWaveOut[l,2*j].append(float(line[20*j+72: 20*j+82]))
distWaveOut[l,2*j+1].append(float(line[20*j+82:20*j+92]))
else:
l = int(line[:4])
l_list.append(l)
for j in range(int(2*sa+1)):
# print(float(line[20*j+4: 20*j+14]))
distWaveIn[l,2*j].append(float(line[20*j+4: 20*j+14]))
distWaveIn[l,2*j+1].append(float(line[20*j+14:20*j+24]))
return r_list, distWaveIn, distWaveOut
#-------------------------------------------------------
def extract_ScatAmp(file_path=filename):
if Lmax is None or sa is None or sb is None :
print("Please run the extract_LmaxSaSb() first")
return
sAmpIn = []
sAmpOut = []
start_line = None
with open(file_path, "r") as file:
for i, line in enumerate(file, start=1):
if "L REAL D1 IMAG D1 REAL D2" in line:
if start_line is None:
start_line = i+1
if Lmax != None and len(sAmpIn) > Lmax :
start_line = None
break
if start_line != None:
if start_line <= i :
columns = line.split()
temp = []
if len(columns) >= 2:
if line[0] == "+" : # these line are for outgoing
for i in range(int(2*(2*sb+1)+1)):
temp.append(float(columns[i+1]))
sAmpOut.append(temp)
else:
for i in range(int(2*(2*sa+1)+1)):
temp.append(float(columns[i]))
sAmpIn.append(temp)
return sAmpIn, sAmpOut
#-------------------------------------------------------
def extract_ElasticXsec(file_path=filename):
x_data, y_data = [], []
start_line = None
with open(file_path, "r") as file:
for i, line in enumerate(file, start=1):
if "0 Theta Sig(1)/Coul Sigma(1)" in line:
if start_line is None:
start_line = i+1
if len(x_data) > 1 and line[0] == "0" :
start_line = None
break
if start_line != None:
if start_line <= i :
columns = line.split()
if len(columns) >= 2:
x_data.append(float(columns[0])) # Convert to float
y_data.append(float(columns[1]))
return [x_data, y_data]
#-------------------------------------------------------
def extract_Xsec(file_path=filename):
x_data, y_data = [], []
start_line = None
with open(file_path, "r") as file:
for i, line in enumerate(file, start=1):
if "0 Theta Inelsig,fm**2" in line:
if start_line is None:
start_line = i+1
if len(x_data) > 1 and "0Tot-sig" in line :
start_line = None
break
if start_line != None:
if start_line <= i :
columns = line.split()
if len(columns) >= 2:
x_data.append(float(columns[0])) # Convert to float
y_data.append(float(columns[1])*10) ## factor convert fm^2 to mb
return [x_data, y_data]
#-------------------------------------------------------
def extract_RadialMatrix(ma:str, mb:str, file_path=filename):
if Lmax is None or sa is None or sb is None :
print("Please run the extract_LmaxSaSb() first")
return
data = []
start_line = None
with open(file_path, "r") as file:
for i, line in enumerate(file, start=1):
if "0 RADIAL MATRIX ELEMENTS," in line and ma in line and mb in line:
if start_line is None:
start_line = i+2
if Lmax != None and len(data) > Lmax :
start_line = None
break
if start_line != None:
if start_line <= i :
l_data = int(line[:4])
real_data = float(line[4:14])
imag_data = float(line[14:])
data.append([l_data, real_data, imag_data])
return data
#-------------------------------------------------------
plotID = 0
plotSMID = 0
def plot_BoundState(data):
global plotID
x_data, y_data = data
plt.figure(figsize=(8, 5))
plt.plot(x_data, y_data, marker="o", linestyle="-", color="b", label="Extracted Data")
plt.xlabel("Radius [fm]")
plt.ylabel("Value")
plt.title("Bound state radial function")
plt.grid(True)
plotID = plotID + 1
manager = plt.get_current_fig_manager()
manager.window.wm_geometry(f"+{850*plotID}+50")
plt.show(block=False)
def plot_RadialMatrix(data, msg:str = ""):
global plotID
l_data, real_data, imag_data = [], [], []
for a in data:
l_data.append(a[0])
real_data.append(a[1])
imag_data.append(a[2])
plt.figure(figsize=(8, 5))
plt.plot(l_data, real_data, marker="o", linestyle="-", color="b", label="Real")
plt.plot(l_data, imag_data, marker="x", linestyle="-", color="r", label="Imag")
plt.xlabel("L")
plt.ylabel("Value")
plt.title("Radial Matrix " + msg)
plt.grid(True)
plt.legend()
plotID = plotID + 1
manager = plt.get_current_fig_manager()
manager.window.wm_geometry(f"+{850*plotID}+50")
plt.show(block=False)
def plot_Xsec(data, isRuth = False):
global plotID
x_data, y_data = data
plt.figure(figsize=(8, 5))
plt.plot(x_data, y_data, linestyle="-", color="b", label="Extracted Data")
plt.xlabel("Angle [deg]")
if isRuth:
plt.ylabel("d.s.c / Ruth ")
else:
plt.ylabel("d.s.c [mb/sr]")
plt.yscale('log')
plt.xlim(-5, 185)
plt.xticks(np.arange(0, 181, 20))
plt.grid(True)
plotID = plotID + 1
manager = plt.get_current_fig_manager()
manager.window.wm_geometry(f"+{850*plotID}+50")
plt.show(block=False)
def plot_SMatrix(data, spin):
global plotSMID
l_data = []
nSpin = int(2*spin+1)
fig, axes = plt.subplots(1, nSpin, figsize=(6*nSpin, 4))
smIn = []
for a in data:
l_data.append(int(a[0]))
tempSM = []
for i in range(nSpin):
real = a[2*i+1]
imag = a[2*i+2]
tempSM.append((real + imag * 1j)*2j + 1 )
smIn.append(tempSM)
for i in range(nSpin):
real_parts = [entry[i].real for entry in smIn]
imag_parts = [entry[i].imag for entry in smIn]
start = 1
if i == nSpin -1 :
start = 0
# Plot real part vs L
axes[i].plot(l_data[start:], real_parts[start:], label=f'Re', marker='o')
# Plot imaginary part vs L
axes[i].plot(l_data[start:], imag_parts[start:], label=f'Im', marker='x')
# Adding labels and title
axes[i].set_xlabel('L')
axes[i].set_ylabel('Value')
axes[i].set_title(f'Real and Imaginary Parts vs L for Spin {i-spin/2.:+.1f}')
# Add grid lines
axes[i].set_xlim(-1, max(l_data)+1)
axes[i].set_ylim(-1.1, 1.1)
axes[i].set_xticks(np.arange(0, max(l_data)+3, 5)) # Set x-ticks from 0 to 20 with step 5
axes[i].grid(True)
# Show the legend
axes[i].legend()
plotSMID = plotSMID + 1
manager = plt.get_current_fig_manager()
manager.window.wm_geometry(f"+850+{650*plotSMID}")
# Adjust layout to prevent overlapping subplots
plt.tight_layout()
plt.show(block=False)
def plot_DistortWave(r_list, dw_real, dw_imag, title:str = ""):
global plotID
plt.figure(figsize=(8, 5))
plt.plot(r_list, dw_real, marker="o", linestyle="-", color="b", label="Re")
plt.plot(r_list, dw_imag, marker="x", linestyle="-", color="r", label="Im")
plt.xlabel("Radius [fm]")
plt.ylabel("Value")
plt.title("Distorted Wave radial function: " + title)
plt.legend()
plt.grid(True)
plotID = plotID + 1
manager = plt.get_current_fig_manager()
manager.window.wm_geometry(f"+{850*plotID}+50")
plt.show(block=False)
##############################################################################
##############################################################################
extract_LmaxSaSb() ## must be run first
bs_data = extract_BoundState()
# plot_BoundState(bs_data)
# sAmpIn, sAmpOut = extract_ScatAmp()
# plot_SMatrix(sAmpIn, sa)
# plot_SMatrix(sAmpOut, sb)
# elXsec_data = extract_ElasticXsec()
# plot_Xsec(elXsec_data)
xsec_data = extract_Xsec()
plot_Xsec(xsec_data)
x_data, y_data = xsec_data
for i, r in enumerate(x_data):
print(f"{{{r:7.3f}, {y_data[i]:10.7f}}},")
def plot_RadialMatrix2(ma:float, mb:float, isPlot:bool=True):
str_a = f"+{int(2*ma):2.0f}/2"
str_b = f"+{int(2*mb):2.0f}/2"
radmat = extract_RadialMatrix(str_a, str_b)
if int(2*ma)%2 == 1 :
msg_a = f"Ja = La + {int(2*ma)}/2"
else:
msg_a = f"Ja = La + {int(ma)}"
if int(2*mb)%2 == 1 :
msg_b = f"Jb = Lb + {int(2*mb)}/2"
else:
msg_b = f"Jb = Jb + {int(mb)}"
if isPlot:
plot_RadialMatrix(radmat, f": {msg_a}, {msg_b}")
return radmat
rList, dwIn, dwOut = extract_DistortedWave()
def plot_DW(isIncoming:bool, L:int, m:float):
if isIncoming :
k = int(m + sa)
plot_DistortWave(rList, dwIn[L][2*k], dwIn[L][2*k+1], f"Incoming L={L}, J=L+{m}")
else:
k = int(m + sb)
plot_DistortWave(rList, dwOut[L][2*k], dwOut[L][2*k+1], f"Outgoing L={L}, J=L+{m}")
import scipy.special as sp
import scipy.interpolate as interp
def CoulombPS(L, eta):
return np.angle(sp.gamma(1 + L + 1j * eta))
r_list, bsW = bs_data
interp_radial = interp.interp1d(r_list, bsW, kind='cubic')
def CalRadialIntgeral(L, ma, mb, isPlot:bool = True, verbose:int = 1):
if isPlot :
plot_DW(True, L, ma)
plot_DW(False, L, mb)
etaI = 0.3997
etaO = 0.276894
radmat = plot_RadialMatrix2(ma, mb, isPlot)
prod_re, prod_im = [], []
total = 0
for i, r in enumerate(rList):
ia = int(2*(ma + sa))
ib = int(2*(mb + sb))
dw_a = dwIn[L][ia][i] + dwIn[L][ia+1][i] * 1j
dw_b = dwOut[L][ib][i] + dwOut[L][ib+1][i] * 1j
bound = 0
if rList[i] <= max(r_list) and rList[i] >= min(r_list) :
bound = interp_radial(r)
total += dw_a * dw_b * bound
prod_re.append(np.real(dw_a * dw_b * bound))
prod_im.append(np.imag(dw_a * dw_b * bound))
if verbose >= 1:
print(f"{i:3d} {bound:8.5f}, {rList[i]:4.1f}, {np.real(dw_a):8.5f}, {np.imag(dw_a):8.5f}, ({np.abs(dw_a):8.5f}), {np.real(dw_b):8.5f}, {np.imag(dw_b):8.5f} | {np.real(dw_a * dw_b * bound):9.6f}, {np.imag(dw_a * dw_b * bound):9.6f}")
total = total * 0.1 * 17./16.
phase = 1 #np.exp( 1j * (CoulombPS(L, etaI)- CoulombPS(L, etaO)) )
if verbose >= 2:
print("-------------------------")
print(f" Radial integral before CoulombPS : {total}")
print(f" CoulombPS : {phase}")
total = phase * total
print(f" total : [{L}, {np.real(total):8.5f}, {np.imag(total):8.6f}]")
print(f" DWUCK4 : {radmat[L]}")
plt.figure(figsize=(8, 5))
plt.plot(rList, prod_re, marker="o", linestyle="-", color="b", label="Real")
plt.plot(rList, prod_im, marker="x", linestyle="-", color="r", label="Imag")
plt.xlabel("L")
plt.ylabel("Value")
plt.title("Product of Radial")
plt.grid(True)
plt.legend()
plt.show(block=False)
return total
# CalRadialIntgeral(3, 1, 0.5)
# radMat = plot_RadialMatrix2(-1, -0.5, True)
# for a in radMat:
# ll, real, imag = a
# print(f"{{{int(ll):2d}, {real:10.7f} + {imag:10.7f} I}},")
#================================================ cal Radial matrix and Plot
# radialIn = []
# for ll in range(15):
# radialIn.append([ll, CalRadialIntgeral(ll, 1, 0.5, False)])
# l_data, real_data, imag_data = [], [], []
# for a in radialIn:
# l_data.append(a[0])
# real_data.append(np.real(a[1]))
# imag_data.append(np.imag(a[1]))
# plt.figure(figsize=(8, 5))
# plt.plot(l_data, real_data, marker="o", linestyle="-", color="b", label="Real")
# plt.plot(l_data, imag_data, marker="x", linestyle="-", color="r", label="Imag")
# plt.xlabel("L")
# plt.ylabel("Value")
# plt.title("Radial Matrix (cal)")
# plt.grid(True)
# plt.show(block=False)
# plot_RadialMatrix2(1, 1/2)
input("Press Enter to exit.")