added WebSimHelper, need to combine the simpleSim to heliosmatics.html

This commit is contained in:
Ryan Tang 2024-03-15 16:14:50 -04:00
parent 7e26d60fe8
commit e3e9fddd2c
26 changed files with 3313 additions and 56 deletions

5
.gitignore vendored
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@ -15,6 +15,7 @@ root_data
*.in
*.out
*.txt
*.csv
Cleopatra/ExtractXSec
Cleopatra/ExtractXSecFromText
@ -25,4 +26,6 @@ Cleopatra/IsotopeShort
Cleopatra/PlotSimulation
Cleopatra/PlotTGraphTObjArray
Cleopatra/SimAlpha
Cleopatra/SimTransfer
Cleopatra/SimTransfer
__pycache__

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@ -20,9 +20,8 @@
#include "constant.h" // amu
#include <stdlib.h> //atoi
#include <algorithm>
using namespace std;
string massData="/Cleopatra/mass20.txt";
std::string massData="../Cleopatra/mass20.txt";
// about the mass**.txt
// Mass Excess = (ATOMIC MASS - A)*amu | e.g. n : (1.088664.91585E-6-1)*amu
@ -34,15 +33,17 @@ class Isotope {
public:
int A, Z;
double Mass, MassError, BEA;
string Name, Symbol;
string dataSource;
std::string Name, Symbol;
std::string dataSource;
Isotope(){findHeliosPath();};
Isotope(int a, int z){ findHeliosPath();SetIso(a,z); };
Isotope(string name){ findHeliosPath(); SetIsoByName(name); };
Isotope(){dataSource = massData;};
Isotope(int a, int z){ dataSource = massData; SetIso(a,z); };
Isotope(std::string name){ dataSource = massData; SetIsoByName(name); };
void SetMassTablePath(std::string path){ dataSource = path;}
void SetIso(int a, int z);
void SetIsoByName(string name);
void SetIsoByName(std::string name);
double CalSp(int Np, int Nn); // this for the Np-proton, Nn-neutron removal
double CalSp2(int a, int z); // this is for (a,z) nucleus removal
@ -59,10 +60,10 @@ public:
private:
void FindMassByAZ(int a, int z); // give mass, massError, BEA, Name, Symbol;
void FindMassByName(string name); // give Z, mass, massError, BEA;
void FindMassByName(std::string name); // give Z, mass, massError, BEA;
int TwoJ(int nShell);
string Orbital(int nShell);
std::string Orbital(int nShell);
int magic(int i){
switch (i){
case 0: return 2; break;
@ -109,21 +110,7 @@ private:
lineMass200 = 2774;
}
char * heliosPath;
bool isFindOnce;
void findHeliosPath(){
heliosPath = getenv("HELIOSSYS");
if( heliosPath ){
dataSource = heliosPath;
dataSource += "/analysis" + massData;
}else{
dataSource = ".." + massData;
}
}
};
@ -133,16 +120,16 @@ void Isotope::SetIso(int a, int z){
FindMassByAZ(a,z);
}
void Isotope::SetIsoByName(string name){
void Isotope::SetIsoByName(std::string name){
FindMassByName(name);
}
void Isotope::FindMassByAZ(int A, int Z){
string line;
std::string line;
int lineNum=0;
int list_A, list_Z;
ifstream myfile;
std::ifstream myfile;
int flag=0;
setFileLines();
@ -171,11 +158,11 @@ void Isotope::FindMassByAZ(int A, int Z){
this->BEA = atof((line.substr(54,11)).c_str());
this->Mass = list_Z*mp + (list_A-list_Z)*mn - this->BEA/1000*list_A;
this->MassError = atof((line.substr(65,7)).c_str());
string str = line.substr(20,2);
std::string str = line.substr(20,2);
str.erase(remove(str.begin(), str.end(), ' '), str.end());
this->Symbol = str;
ostringstream ss;
std::ostringstream ss;
ss << A << this->Symbol;
this->Name = ss.str();
flag = 1;
@ -202,7 +189,7 @@ void Isotope::FindMassByAZ(int A, int Z){
}
}
void Isotope::FindMassByName(string name){
void Isotope::FindMassByName(std::string name){
// done seperate the Mass number and the name
if( name == "n" ) {
@ -220,7 +207,7 @@ void Isotope::FindMassByName(string name){
if( name == "t" ) name = "3H";
if( name == "a" ) name = "4He";
string temp = name;
std::string temp = name;
int lastDigit = 0;
for(int i=0; temp[i]; i++){
@ -251,12 +238,12 @@ void Isotope::FindMassByName(string name){
//printf(" Symbol = |%s| , Mass = %d\n", this->Symbol.c_str(), this->A);
// find the nucleus in the data
string line;
std::string line;
int lineNum=0;
int list_A;
string list_symbol;
std::string list_symbol;
ifstream myfile;
std::ifstream myfile;
int flag=0;
setFileLines();
@ -289,11 +276,11 @@ void Isotope::FindMassByName(string name){
this->Mass = this->Z*mp + (list_A-this->Z)*mn - this->BEA/1000*list_A;
this->MassError = atof((line.substr(65,7)).c_str());
string str = line.substr(20,2);
std::string str = line.substr(20,2);
str.erase(remove(str.begin(), str.end(), ' '), str.end());
this->Symbol = str;
ostringstream ss;
std::ostringstream ss;
ss << this->A << this->Symbol;
this->Name = ss.str();
flag = 1;
@ -372,7 +359,7 @@ int Isotope::TwoJ(int nShell){
return 0;
}
string Isotope::Orbital(int nShell){
std::string Isotope::Orbital(int nShell){
switch(nShell){
case 0: return "0s1 "; break; //
@ -416,7 +403,7 @@ void Isotope::ListShell(){
int n = A-Z;
int p = Z;
int k = min(n,p);
int k = std::min(n,p);
int nMagic = 0;
for( int i = 0; i < 7; i++){
if( magic(i) < k && k <= magic(i+1) ){
@ -434,7 +421,7 @@ void Isotope::ListShell(){
printf("------------------ Core:%3s, inner Core:%3s \n", (core2.Name).c_str(), (core1.Name).c_str());
printf(" || ");
int t = max(n,p);
int t = std::max(n,p);
int nShell = 0;
do{
int occ = TwoJ(nShell)+1;
@ -512,8 +499,6 @@ void Isotope::Print(){
if (Mass > 0){
findHeliosPath();
printf(" using mass data : %s \n", dataSource.c_str());
printf(" mass of \e[47m\e[31m%s\e[m nucleus (Z,A)=(%3d,%3d) is \e[47m\e[31m%12.5f\e[m MeV, BE/A=%7.5f MeV\n", Name.c_str(), Z, A, Mass, BEA/1000.);
printf(" total BE : %12.5f MeV\n",BEA*A/1000.);

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@ -22,7 +22,7 @@
class TransferReaction {
public:
TransferReaction(){Inititization();};
TransferReaction(string configFile, unsigned short ID = 0);
TransferReaction(std::string configFile, unsigned short ID = 0);
TransferReaction(int beamA, int beamZ,
int targetA, int targetZ,
int recoilA, int recoilZ, float beamEnergy_AMeV);
@ -84,7 +84,7 @@ private:
Recoil recoil;
ReactionConfig config;
string nameA, namea, nameb, nameB;
std::string nameA, namea, nameb, nameB;
double thetaIN, phiIN;
double mA, ma, mb, mB;
@ -108,7 +108,7 @@ private:
};
TransferReaction::TransferReaction(string configFile, unsigned short ID){
TransferReaction::TransferReaction(std::string configFile, unsigned short ID){
Inititization();
SetReactionFromFile(configFile, ID);
}
@ -227,7 +227,7 @@ void TransferReaction::SetExB(double Ex){
isReady = false;
}
void TransferReaction::SetReactionFromFile(string configFile, unsigned short ID){
void TransferReaction::SetReactionFromFile(std::string configFile, unsigned short ID){
if( config.LoadReactionConfig(configFile) ){

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@ -34,8 +34,8 @@ int main(int argc, char *argv[]){
double Ex = 0;
double xRatio = 0.95;
int nDiv = 1;
string reactionTxt = "reactionConfig.txt";
string detGeoTxt = "detectorGeo.txt";
std::string reactionTxt = "reactionConfig.txt";
std::string detGeoTxt = "detectorGeo.txt";
int ID = 0;
if ( argc >= 2 ) Ex = atof(argv[1]);

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@ -94,7 +94,7 @@ void FindThetaCM(double Ex, int nDivision=1, double XRATION = 0.95,
int iDet = array.nDet;
double length = array.detLength;
vector<double> midPos;
std::vector<double> midPos;
for(int i = 0; i < iDet; i++){
if( array.firstPos > 0 ){

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@ -135,9 +135,9 @@ void Transfer(
dwbaExList = (TMacro *) distFile->FindObjectAny("ExList");
int numEx = dwbaExList->GetListOfLines()->GetSize() - 1 ;
for(int i = 1; i <= numEx ; i++){
string temp = dwbaExList->GetListOfLines()->At(i)->GetName();
std::string temp = dwbaExList->GetListOfLines()->At(i)->GetName();
if( temp[0] == '/' ) continue;
vector<string> tempStr = AnalysisLib::SplitStr(temp, " ");
std::vector<std::string> tempStr = AnalysisLib::SplitStr(temp, " ");
exList.Add( atof(tempStr[0].c_str()), atof(tempStr[1].c_str()), 1.0, 0.00);
}
@ -330,7 +330,7 @@ void Transfer(
//--- cal modified f
TObjArray * fxList = new TObjArray();
TGraph ** fx = new TGraph*[numEx];
vector<double> px, py;
std::vector<double> px, py;
int countfx = 0;
for( int j = 0 ; j < numEx; j++){
double a = helios.GetDetRadius();
@ -692,8 +692,8 @@ int main (int argc, char *argv[]) {
//run Armory/Check_Simulation
if( isPlot ){
ifstream file_in;
file_in.open("../Cleopatra/Check_Simulation.C", ios::in);
std::ifstream file_in;
file_in.open("../Cleopatra/Check_Simulation.C", std::ios::in);
if( file_in){
printf("---- running ../Cleopatra/Check_Simulation.C on %s \n", saveFileName.Data());
TString cmd;

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@ -26,7 +26,7 @@ void PrintPotential(){
/// A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
/// 1 1 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 1 1 1
string potentialRef(string name){
std::string potentialRef(std::string name){
//======== Deuteron
if( name == "A" ){
@ -1034,7 +1034,7 @@ bool BassaniPicardPotential(int A, int Z, double E){
return true;
}
bool CallPotential(string potName, int A, int Z, double E, int Zproj){
bool CallPotential(std::string potName, int A, int Z, double E, int Zproj){
bool okFlag = false;
if( potName == "A") okFlag = AnCaiPotential(A, Z, E);

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@ -0,0 +1,239 @@
let energy = [];
let jpi = [];
let Name;
let A;
let Sym;
function breakdownName(str) {
const match = str.match(/^(\d+)([a-zA-Z]+)$/);
if (match) {
const numberPart = parseInt(match[1]);
const stringPart = match[2];
return { numberPart, stringPart };
} else {
return null; // If the input string doesn't match the expected format
}
}
let Sn = 999;
let Sp = 999;
let Sa = 999;
function GetData(){
Name = document.getElementById('ASym').value;
let maxEx = parseFloat(document.getElementById('maxEx').value);
let str = 'displayIsoData.py?ASym=' + Name + "&maxEx=" + maxEx;
let client = new XMLHttpRequest();
client.onreadystatechange = function() {
let haha = client.responseText.split('\n');
jpi = [];
energy = [];
haha.forEach(line =>{
// console.log(line)
if( line.includes("Sn:") ) {
let pos1 = line.indexOf("Sn:");
let pos2 = line.indexOf("MeV");
Sn = parseFloat(line.substring(pos1+3, pos2));
}
if( line.includes("Sp:") ) {
let pos1 = line.indexOf("Sp:");
let pos2 = line.indexOf("MeV");
Sp = parseFloat(line.substring(pos1+3, pos2));
}
if( line.includes("Sa:") ) {
let pos1 = line.indexOf("Sa:");
let pos2 = line.indexOf("MeV");
Sa = parseFloat(line.substring(pos1+3, pos2));
}
if( line.includes("<tr><td style=") && line.length != 0) {
jpi.push(line.substring(95).slice(0,-10).trim());
energy.push(parseFloat(line.substring(43,54).trim()));
// console.log(jpi[jpi.length - 1] + ", " + energy[energy.length-1]);
}
});
}
client.open('GET', str, false);
client.send();
}
function PlotLevels(){
GetData();
Plotly.purge("Plot_Levels");
if( energy.length == 0 ) return;
// console.log( Name + " | num. states : " + energy.length);
const plotWidth = 300;
const plotHeight = 600;
const yMin = -1;
let maxEx = parseFloat(document.getElementById('maxEx').value);
const maxExExp = Math.max(...energy);
// console.log(maxExExp);
// let maxY = parseFloat(document.getElementById('plotRange').value);
const fig = {
data: [],
layout: {
plot_bgcolor: 'white',
width: plotWidth,
height: plotHeight,
margin: { l: 0, r: 0, t: 0, b: 0 },
showlegend: false,
xaxis: {
showline: false,
visible: false,
range: [-1, 2.5]
},
yaxis: {
range: [yMin, maxEx + 2],
showline: false,
visible: false
},
annotations: []
}
};
const l = energy.length;
const fontSize = 14;
const fontSizeMeV = fontSize / plotHeight * (maxExExp + 1 - yMin);
let ypos = [];
for( let i = 0; i < energy.length; i++) ypos.push(energy[i]);
let noOverlap = false;
let loop = 0;
while (!noOverlap && loop < 2 * l) {
for (let i = 1; i <= l; i++) {
const diff = ypos[i] - ypos[i - 1];
if (diff < fontSizeMeV) {
ypos[i - 1] += (diff - fontSizeMeV) / 2;
ypos[i] += (fontSizeMeV - diff) / 2;
if (ypos[i - 1] < yMin + fontSizeMeV / 2) {
ypos[i - 1] = yMin + fontSizeMeV / 2;
ypos[i] = ypos[i - 1] + fontSizeMeV;
}
}
}
let count = 0;
for (let i = 1; i <= l; i++) {
const diff = ypos[i] - ypos[i - 1];
if (diff > fontSizeMeV) {
count++;
}
}
if (count === l) {
noOverlap = true;
}
loop++;
}
for (let i = 0; i < l; i++) {
fig.data.push({
x: [0, 1],
y: [energy[i], energy[i]],
mode: 'lines',
line: { color: 'black', width: 1 }
});
fig.data.push({
x: [1.03, 1.1, 1.19],
y: [energy[i], ypos[i], ypos[i]],
mode: 'lines',
line: { color: 'gray', width: 1 }
});
// console.log(energy[i]+ ", " + ypos[i]);
fig.layout.annotations.push({
x: 1.2,
y: ypos[i],
text: `${energy[i].toFixed(3)}, ${jpi[i]}`,
xanchor: 'left',
font: { size: fontSize },
showarrow: false
});
}
console.log("Sn: " + Sn);
console.log("Sp: " + Sp);
console.log("Sa: " + Sa);
let leftPos = -0.8;
fig.data.push({
x: [leftPos, 1],
y: [Sn, Sn],
mode: 'lines',
line: { color: 'blue', width: 1 }
});
fig.layout.annotations.push({
x: leftPos,
y: Sn + fontSizeMeV/2,
text: `${'Sn:'+Sn.toFixed(3)}`,
xanchor: 'left',
font: { size: fontSize, color: 'blue' },
showarrow: false
});
fig.data.push({
x: [leftPos, 1],
y: [Sp, Sp],
mode: 'lines',
line: { color: 'red', width: 1 }
});
fig.layout.annotations.push({
x: leftPos,
y: Sp + fontSizeMeV/2,
text: `${'Sp:'+Sp.toFixed(3)}`,
xanchor: 'left',
font: { size: fontSize, color: 'red' },
showarrow: false
});
fig.data.push({
x: [leftPos, 1],
y: [Sa, Sa],
mode: 'lines',
line: { color: 'purple', width: 1 }
});
fig.layout.annotations.push({
x: leftPos,
y: Sa + fontSizeMeV/2,
text: `${'Sa:'+Sa.toFixed(3)}`,
xanchor: 'left',
font: { size: fontSize, color: 'purple' },
showarrow: false
});
// let NameYPos = (parseFloat(maxEx) + 2*fontSizeMeV);
// console.log(NameYPos);
let name2 = breakdownName(Name);
fig.layout.annotations.push({
x: 0.5,
y: (maxEx + 1),
text: "<sup>" + name2.numberPart +"</sup>" + name2.stringPart,
font: { size: 2 * fontSize },
showarrow: false
});
// Create the plot
Plotly.newPlot('Plot_Levels', fig.data, fig.layout);
}

55
WebSimHelper/README.md Normal file
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@ -0,0 +1,55 @@
# Introduction
This is a web inteface for the HELIOS/SOLARIS simulation. Its purpose is NOT to replace the Simulation_Helper.C in the origin digios repository.
It is simply provide a more easy accessible way to do simulation.
# Installation in Apache2
Assume the parant SOLARIS_ANALYSIS is in the home folder
add a symbolic link
```sh
$cd /var/www/html
$ln -s ~/SOLARIS_ANALYSIS SOLARIS
```
I want localhost/SOLARIS map to /var/www/html/SOLARIS/WebSimHelper, in the apache config
```sh
$cd /etc/apache2/sit-available
$touch SOLARIS.conf
```
inside SOLARIS.conf
```sh
<VirtualHost *:80>
ServerAdmin rtang@anl.gov
DocumentRoot /var/www/html/
ServerName localhost
#map localhost/SOLARIS to /var/www/html/SOLARIS/WebSimHelper
Alias /SOLARIS /var/www/html/SOLARIS/WebSimHelper
#set the directory properties
<Directory /var/www/html/>
Options Indexes FollowSymLinks
AllowOverride None
Require all granted
Options +ExecCGI
AddHandler cgi-script .cgi .py
</Directory>
ErrorLog ${APACHE_LOG_DIR}/error.log
CustomLog ${APACHE_LOG_DIR}/access.log combined
</VirtualHost>
```
then enable the site
```sh
$sudo a2ensite SOLARIS.conf
$sudo systemctl restart apach2.service
```

29
WebSimHelper/displayIsoData.py Executable file
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@ -0,0 +1,29 @@
#!/usr/bin/env /usr/bin/python3
import isotopeLib
import cgi
form = cgi.FieldStorage()
ASym = form.getvalue('ASym')
maxEx = form.getvalue('maxEx')
print( "Content-type:text/html\r\n\r\n")
print("<html>")
print("<style> body { font-family: courier, courier new, serif; color: #F7CF3C; } </style>")
print("<body>")
isotopeLib.PrintIsoWeb(ASym)
if maxEx == "can be omitted" or float(maxEx) <= 0:
maxEx = -1
else:
isotopeLib.PrintIsoExWeb(ASym, float(maxEx))
print("</body>")
print("</html>")

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@ -0,0 +1,470 @@
<!DOCTYPE html>
<html>
<head>
<title>Heliosmatics</title>
<meta name="description" content="HELIOSmatics was first built by Ben P. Kay in MS Excel around 2010. Later, it was modified by Ryan Tang. Now, it migrates to web.">
<link rel="icon" type="image/x-icon" href="logos/SOLARIS_favicon.png">
<script src="https://cdn.plot.ly/plotly-2.16.1.min.js"></script>
<meta name="viewport" content="width=device-width, height=device-height, initial-scale=1.0, user-scalable=no, user-scalable=0"/>
</head>
<style>
body{
font-family: Arial, Helvetica, sans-serif;
background : #6DB33E;
}
.column{
float : left;
width: 650px;
padding: 0px;
}
.row:after {
content: "";
display: table;
clear: both;
}
.plotStyle{
width:650px;
height:600px;
}
.slider{
width : 400px;
}
.plotSlider{
width: 400px;
}
hr {
height:4px;
background-color:#F7CF3C;
border-style:none;
border-width:none;
}
@media screen and (max-width: 1000px) {
.column {
width: 100%;
}
.plotStyle{
width:400px;
height: 370px;
}
.slider{
width: 200px;
}
.plotSlider{
width: 180px;
}
img {
height: 50px;
}
}
</style>
<body>
<h1>HELIOSmatics</h1>
<button onclick="CopyInputs()">Copy settings to clipboard</button>
<h1 id='reactionName' style="color: #1363A7"> 24F(d,p)25F@10MeV/u</h1>
<table>
<tr>
<td style="text-align:right"> Beam (A):</td>
<td><Input type="text" style="width:60px" value="24F" id="beam" enterkeyhint="done"/></td>
<td style="text-align:right"> Beam Ex:</td>
<td><Input type="text" style="width:60px" value="0" id="beamEx" enterkeyhint="done"/></td>
<td>MeV</td>
<td id='beamSp'></td>
<!--td id="beamYield"></td>-->
</tr>
<tr>
<td style="text-align:right"> Target (a):</td>
<td><Input type="text" style="width:60px" value="d" id="target" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right"> Light (b):</td>
<td><Input type="text" style="width:60px" value="p" id="light" enterkeyhint="done"/></td>
<td style="text-align:right"> Q-value:</td>
<td id='Q-value'>2.057</td>
<td>MeV</td>
</tr>
<tr>
<td style="text-align:right"> Heavy (B):</td>
<td id='heavyName'>25F</td>
</tr>
</table>
<p style="font: 12px" id='heavySp'></p>
<p></p>
<table>
<tr>
<td>
<input type="radio" name="SSType" id='HELIOS' value="HELIOS"/>HELIOS
</td>
<td>
<input type="radio" name="SSType" id='SOLARIS' value="SOLARIS" checked="checked"/>SOLARIS
</td>
<td>
<input type="radio" name="SSType" id='ISS' value="ISS"/>ISS
</td>
</tr>
</table>
<p></p>
<table>
<tr>
<td style="text-align:right"> B-field (abs.):</td>
<td><Input type="text" style="width:60px" value="2" id='BField' enterkeyhint="done"/></td>
<td>T</td>
<td><Input type="range" min="0" max="6" step="0.05" value="2" class="slider" id='BRange'/> </td>
</tr>
<tr>
<td style="text-align:right"> Beam Energy:</td>
<td><Input type="text" style="width:60px" value="10" id='KEA' enterkeyhint="done"/></td>
<td>MeV/u</td>
<td><Input type="range" min="0" max="20" step="0.1" value="10" class="slider" id='KEARange'/> </td>
</tr>
<tr>
<td></td>
<td></td>
<td></td>
<td id='minKEA'> </td>
</tr>
</table>
<p></p>
<table id="ExTable", style="border:1px solid; text-align:center;">
<tr>
<th style="width:85px"> E<sub>x</sub> [MeV]</th>
<th style="width:85px"> &theta;<sub>cm</sub>[deg]</th>
<th style="width:70px">E<sub>b</sub>[MeV]</th>
<th style="width:70px">Z<sub>b0</sub>[mm]</th>
<th style="width:70px">Z<sub>b</sub>[mm]</th>
<th style="width:70px">2&rho;<sub>b</sub>[mm]</th>
<th style="width:70px">&theta;Lab<sub>b</sub>[deg]</th>
<th style="width:60px">T<sub>b</sub>[ns]</th>
<th style="width:70px">E<sub>B</sub>[MeV]</th>
<th style="width:90px">&theta;Lab<sub>B</sub>[deg]</th>
<th style="width:80px">Z<sub>B0</sub>/2[mm]</th>
<th style="width:70px">2&rho;<sub>B</sub>[mm]</th>
</tr>
</tr>
<td><input type="text" id='Ex1' name="Ex" size="8" value="0" enterkeyhint="done"/></td>
<td><input type="text" id='theta1' name="thetaCM" size="8" value="10" enterkeyhint="done"/></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tr>
<td><input type="text" id='Ex2' name="Ex" size="8" value="1" enterkeyhint="done"/></td>
<td><input type="text" id='theta2' name="thetaCM" size="8" value="40" enterkeyhint="done"/></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td><button type="button" onclick="addRow()" style="width:85px">Add E<sub>x</sub></button></td>
<td><button type="button" onclick="deleteRow()">Remove E<sub>x</sub></button></td>
</tr>
</table>
<p></p>
<table>
<tr>
<td style="text-align:right"> &theta;<sub>CM</sub>:</td>
<td><Input type="text" style="width:60px" value="0" id='thetaCM' enterkeyhint="done"/></td>
<td>deg</td>
<td><Input type="range" min="0" max="50" step="0.1" value="0" class="slider" id='thetaCMRange'/> </td>
</tr>
<td style="text-align:right"> Array Pos:</td>
<td><Input type="text" style="width:60px" value="-100" id='posArray' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="-500" max="1000" step="1" value="-100" class="slider" id='posArrayRange'/> </td>
</tr>
<tr>
<td style="text-align:right"> Recoil Pos:</td>
<td><Input type="text" style="width:60px" value="1500" id='posRecoil' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="0" max="2000" step="1" value="1500" class="slider" id='posRecoilRange'/> </td>
</tr>
</table>
<table>
<tr>
<td style="text-align:right" > Recoil radius, inner [mm]:</td>
<td><Input type="text" style="width:40px" value="10" id='innerRecoil' enterkeyhint="done"/></td>
<td style="text-align:right" > outter [mm]:</td>
<td><Input type="text" style="width:40px" value="45" id='outterRecoil' enterkeyhint="done"/></td>
</tr>
</table>
<p></p>
<div class="row">
<div class="column">
<table cellspacing="0" cellpadding="0">
<tr>
<td>
<div id="Plot_EZ" class="plotStyle"></div>
</td>
</tr>
<tr> <td>&nbsp;</td></tr>
<tr>
<td> &nbsp;zRange can be changed by Array position.</td>
</tr>
<tr>
<td>
<table>
<tr>
<td>eRange:</td>
<td><Input type="text" style="width:60px" value="12" id='eRange' enterkeyhint="done"/></td>
<td>MeV</td>
<td><Input type="range" min="1" max="30" step="0.1" value="12" class="plotSlider" id='eRangeSlider'/></td>
</tr>
</table>
</td>
</tr>
<tr> <td>&nbsp;</td></tr>
</table>
</div>
<div class="column">
<table cellspacing="0" cellpadding="0">
<tr>
<td>
<div id="Plot_RZ" class="plotStyle"></div>
</td>
</tr>
<tr> <td>&nbsp;</td></tr>
<tr>
<td>
<table>
<tr>
<td>zRange(Min):</td>
<td><Input type="text" style="width:60px" value="-200" id='zRange1' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="-2000" max="4000" step="1" value="-200" class="plotSlider" id='zRange1Slider'/></td>
</tr>
<tr>
<td>zRange(Max):</td>
<td><Input type="text" style="width:60px" value="2000" id='zRange2' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="-2000" max="4000" step="1" value="2000" class="plotSlider" id='zRange2Slider'/></td>
</tr>
<tr>
<td>rRange:</td>
<td><Input type="text" style="width:60px" value="50" id='rRange' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="1" max="400" step="1" value="50" class="plotSlider" id='rRangeSlider'/></td>
</tr>
</table>
</td>
</tr>
<tr> <td>&nbsp;</td></tr>
</table>
</div>
</div>
<p id="n0"></p>
<p id="n1"></p>
<p id="n2"></p>
<p id="n3"></p>
<hr>
<h1>&theta;<sub>CM</sub> Calculator</h1>
The calculation only give &theta;<sub>CM</sub> after the bending.
<p></p>
<table>
<tr>
<td>Ex [MeV] : </td>
<td><Input type="text" style="width:60px" value="0" id='Ex0' enterkeyhint="done"/></td>
<td>&theta;<sub>CM</sub> Gate [deg] : </td>
<td><Input type="text" style="width:60px" value="10" id='thetaCMGate' enterkeyhint="done"/></td>
<td>X Gate [%] : </td>
<td><Input type="text" style="width:60px" value="95" id='XGate' enterkeyhint="done"/></td>
</tr>
<tr>
<table id='thetaCMTable' style="border:1px solid; text-align:center;">
<tr>
<td style="width:30px"><b>ID</b></td>
<td style="width:120px"><b>pos<sub>0</sub>(gated)</b></td>
<td style="width:120px"><b>pos<sub>1</sub>(gated)</b></td>
<td style="width:60px"><b>&theta;<sub>1</sub>[deg]</b></td>
<td style="width:60px"><b>&theta;<sub>2</sub>[deg]</b></td>
<td style="width:60px"><b>&theta;<sub>avg</sub>[deg]</b></td>
<td style="width:60px"><b>&Delta;&theta;[deg]</b></td>
<td style="width:100px"><b>sin(&theta;<sub>avg</sub>)&Delta;&theta;</b></td>
</tr>
</table>
</tr>
</table>
<!-- ===================================================== -->
<!--
<hr>
<h1> DWBA and Monte Carlo Simulation (under construction...)</h1>
<table id='DWBATable' style="border:1px solid; text-align:center;">
<tr>
<td> E<sub>x</sub> [MeV]</td>
<td> J<sup>&#960;</sup></td>
<td> Orbital </td>
</tr>
</tr>
<td id='dwba1'>0</td>
<td><input type="text" name="Jpi" size="5" value="3/2+" enterkeyhint="done"/></td>
<td><input type="text" name="Orb" size="5" value="0d3/2" enterkeyhint="done"/></td>
</tr>
</tr>
<td id='dwba2'>0</td>
<td><input type="text" name="Jpi" size="5" value="1/2+" enterkeyhint="done"/></td>
<td><input type="text" name="Orb" size="5" value="1s1/2" enterkeyhint="done"/></td>
</tr>
</table>
<p></p>
<input type="checkbox" name="DWBA" value="On"/>Cal. DWBA
<table>
<tr>
<td>Incoming Channel</td>
<td>
<select name="op1">
<option value="A" selected>D | An & Cai (2006), E < 183, 12 < A < 238</option>
<option value="H">D | Han, Shi, & Shen, (2006), E < 200 | 12 < A < 209</option>
<option value="B">D | Bojowald et al., (1988), 50 < E < 80 | 27 < A < 208</option>
<option value="K">P | Koning & Delaroche, (2009), E < 200 | 24 < A < 209 | Iso.Dep.</option>
<option value="V">P | Varner et al., (1991), 16 < E < 65 | 4 < A < 209</option>
<option value="M">P | Menet et al., (1971), 30 < E < 60 | 40 < A </option>
<option value="x">A=3 | Xu, Guo, Han, & Shen, (2011), E < 250 | 20 < A < 209 </option>
<option value="l">A=3 | Liang, Li, & Cai, (2009), E < 270 | All masses </option>
<option value="x">A=4 | Su & Han, (2015), E < 398 | 20 < A < 209 </option>
</select>
<td>
</tr>
<tr>
<td>Outgoing Channel</td>
<td>
<select name="op2">
<option value="A">D | An & Cai (2006), E < 183, 12 < A < 238</option>
<option value="H">D | Han, Shi, & Shen, (2006), E < 200 | 12 < A < 209</option>
<option value="B">D | Bojowald et al., (1988), 50 < E < 80 | 27 < A < 208</option>
<option value="K" selected>P | Koning & Delaroche, (2009), E < 200 | 24 < A < 209 | Iso.Dep.</option>
<option value="V">P | Varner et al., (1991), 16 < E < 65 | 4 < A < 209</option>
<option value="M">P | Menet et al., (1971), 30 < E < 60 | 40 < A </option>
<option value="x">A=3 | Xu, Guo, Han, & Shen, (2011), E < 250 | 20 < A < 209 </option>
<option value="l">A=3 | Liang, Li, & Cai, (2009), E < 270 | All masses </option>
<option value="x">A=4 | Su & Han, (2015), E < 398 | 20 < A < 209 </option>
</select>
<td>
</tr>
</table>
<h3> Plot config (still working on):</h3>
<input type="checkbox" name="plot" value="pEZ" checked/>E vs Z<br>
<input type="checkbox" name="plot" value="pExCal" checked/>Ex (cal.)<br>
<input type="checkbox" name="plot" value="pThetaCM" checked/>ThetaCM<br>
<input type="checkbox" name="plot" value="pThetaCM_Z" checked/>ThetaCM vs Z<br>
<input type="checkbox" name="plot" value="pRecoilXY" checked/>Recoil X vs Y<br>
<input type="checkbox" name="plot" value="pRecoilRThetaCM"/>Recoil-R vs ThetaCM<br>
<input type="checkbox" name="plot" value="pRecoilRZ"/>Recoil R vs Z<br>
<input type="checkbox" name="plot" value="pArrayXY"/>Array X vs Y<br>
<p></p>
<input type="checkbox" name="gate" value="hit==1" checked/>Array Hit<br>
<input type="checkbox" name="gate" value="loop<=1" checked/>Loop = 1<br>
<input type="checkbox" name="gate" value="thetaCM>10" checked/> ThetaCM > 10 deg<br>
<p></p>
<input type = "submit" value = "Run Simulation" style="width:200px;height:60px;font-size:20px" />
<p></p>
<iframe style="border:none;"></iframe>
-->
<!-- ===================================================== -->
<hr>
<p></p>
HELIOSmatics was first built by Ben P. Kay in MS Excel around 2010. It was modified by Ryan Tang later. And now it migrated to the web on Dec, 2022.
<br>
The calculation can be found in the source code (heliosmatics.js or press F12)
<p></p>
<!--
<hr>
Experimental 3D model
<div id="Plot_3D" class="plotStyle"></div>
-->
</body>
<!-- ######################################################################################### -->
<script src="heliosmatics.js"></script>
<script>
function CopyInputs(){
let inputs = document.getElementsByTagName("input");
let copyText = "====HELIOSMATICS|";
for(let i = 0; i < inputs.length; i++){
if( inputs[i].type == 'text'){
//console.log(inputs[i].id.substring(0,2));
if( inputs[i].id.substring(0,2) == 'Ex' || inputs[i].id.substring(0,5) == 'theta' ) {
continue;
}
if( inputs[i].id == 'innerRecoil'){
break;
}
copyText += inputs[i].value + ", ";
}
}
copyText += document.getElementById('heavyName').innerHTML;
//console.log(copyText);
navigator.clipboard.writeText(copyText).then(
() => {
alert('Setting copied to clipboard.\nCan paste it in Monte Carlo simulation.\n' + copyText);
}).catch(
() =>{
alert('Cannot copy.');
});
//window.open('simpleSim.html');
}
</script>
</html>

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<!DOCTYPE html>
<html>
<head>
<title>SOLARIS Si-Array Mode Simulation </title>
<meta name="description" content="SOLARIS Si-Array mode simulation. This is ported from the original Heliosmatics in MS excel, Monte Carlo simulation using CERN ROOT, and DWBA simulation using the Peolemy.">
<link rel="icon" type="image/x-icon" href="logos/SOLARIS_favicon.png">
</head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<script src="https://cdn.plot.ly/plotly-2.16.1.min.js"></script>
<style>
:root{
--navWidth: 300px;
}
body {
font-family: Arial, Helvetica, sans-serif;
}
/* table, th, td { */
/* border: 1px solid black; */
/* } */
table.center{
margin-left: auto;
margin-right: auto;
}
header {
background-color: #F7CF3C;
padding: 10px;
text-align: center;
font-size: 35px;
color: black;
}
nav {
float: left;
width : var(--navWidth);
height: 100vh;
/* background: #6DB33E; */
background: #1363A7;
padding: 0px;
}
article {
float: none;
padding: 0px;
margin-left: var(--navWidth);
height: 1000px;
height : 100vh;
/* background: #1363A7; */
background: #6DB33E;
}
a {
color : #F7CF3C;
}
.column1{
float : left;
width : 50%;
text-align:right;
}
.column2{
float : right;
width : 50%;
text-align: left;
}
.row:after {
content: "";
display: table;
clear: both;
}
@media (max-width: 1000px) {
.column1 {
width: 100%;
height: 40%;
text-align:center;
}
.column2 {
width: 100%;
text-align:center;
}
nav {
width: 100%;
height: auto;
margin-left : 0;
}
article {
float: left;
margin-left : 0px;
width: 100%;
height: 100vh;
margin-left : 0;
}
}
</style>
<body>
<header>
<div class="row">
<div class="column1"">
<img src="logos/SOLARIS_logo.png" width="300">
</div>
<div class="column2">
<span style="font-size:70px;">Simulation</span>
</div>
</div>
</header>
<section>
<nav id="nav">
<div class="visit-counter"></div>
<p></p>
<table class="center">
<tr>
<td style="text-align:right"><a href="heliosmatics.html" target="uploaded">HELIOSmatics</a></td>
</tr>
<tr>
<td style="text-align:right"><a href="simpleSim.html" target="uploaded">DWBA and Monte Carlo Simulation</a></td>
</tr>
<tr>
<td style="text-align:right"><a href="miscCal.html" target="uploaded">Misc. Calulations</a></td>
</tr>
<tr>
<td style="text-align:right"><a href="instruction.html" target="uploaded">Intructions & Credits</a></td>
</tr>
<table>
<p></p><!-- ////////////////////////////////////////// -->
<form action = "displayIsoData.py" method = "POST" target = "NuclearData">
<table class="center">
<tr>
<td style="text-align:right">Isotopes Name:</td>
<td><input type = "text" name = "ASym" id="ASym" size="13" value="24F" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right">Max Ex [MeV]:</td>
<td><input type = "text" name = "maxEx" id="maxEx" size="13" value="can be omitted" enterkeyhint="done"/></td>
</tr>
<tr>
<td></td>
<td><button onclick="PlotLevels()" style="width: 130px;">Get Isotopes Data</button></td>
</tr>
</table>
</form>
<div id="Plot_Levels" class="plotStyle"></div>
<iframe name="NuclearData" style="border:none;width:100%;height:100%" ></iframe>
</nav>
<!-- ////////////////////////////////////////// -->
<article id="article" >
<iframe id="main" name="uploaded" style="border:none;width:100%;" src="heliosmatics.html"></iframe>
</article>
</section>
<script src="EnergyLevelsPlot.js"></script>
<script>
let frame = document.getElementById("main");
let frameNav = document.getElementById("nav");
let frameArticle = document.getElementById("article");
let x = window.matchMedia("(max-width: 1000px)");
adjustHeight();
x.addListener(adjustHeight);
function adjustHeight(){
let hhh = frame.contentWindow.document.body.scrollHeight * 1.1 + 'px';
frame.style.height = hhh;
frameArticle.style.height = hhh;
if( x.matches){
frameNav.style.height = "40%";
}else{
frameNav.style.height = hhh;
}
}
frame.onload = adjustHeight;
</script>
</body>
</html>

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<!DOCTYPE html>
<html>
<body>
<style>
body{
//color : #767A4C;
font-family: Arial, Helvetica, sans-serif;
}
a {
//color : #F7CF3C;
color : #1363A7;
}
hr {
height:4px;
background-color:#F7CF3C;
border-style:none;
border-width:none;
}
img {
height: 100px;
}
@media screen and (max-width: 1000px) {
img {
height: 50px;
}
}
</style>
<h1>Intructions:</h1>
<p>
<ul>
<li>Use the <a href="heliosmatics.html" target="uploaded">HELIOSmatics</a> to check the detector and field settings.</li>
<li>The easiest way to do DWBA and Monte Carlo Simulation is use the <a href="simpleSim.html" target="uploaded">Simplied Interface</a>
<li>The kenimatic calculation is documented in <a href="https://wiki.anl.gov/wiki_heliosdaq/images/3/3f/Kinematics_of_HELIOS.pdf" target="_blank" >Here</a>.</li>
<li>The DWBA calucation is using Ptolemy. <a href="https://www.phy.anl.gov/theory/research/ptolemy/" target="_blank">Here</a> for more detail. </li>
<li>Past calculations can be found <a href="files/" target="uploaded">Here</a>. Clear every Monday.</li>
</ul>
</p>
<hr>
<h1>Credits:</h1>
<h4>This page is created and hosted by Fox's Lab (FSU) in collabortion with SOLARIS (FRIB).</h4>
<h4>The SOLARIS project is based on HELIOS (ANL) and is leaded by ANL.</h4>
<h4>The ISS (ISOLDE Solenoidal Spectrometer) is located as CERN.</h4>
<a href="https://fsunuc.physics.fsu.edu" target="_blank"><img src="logos/FSU_logo_640.png"></a>
<a href="https://fribs.msu.edu/news/2021/solaris.html" target="_blank"><img src="logos/FRIB_logo.jpg"></a>
<a href="https://home.cern/science/experiments/isolde" target="_blank"><img src="logos/CERN_logo.svg"></a>
<a href="https://www.anl.gov/phy" target="_blank"><img src="logos/ANL_logo.gif"></a>
<a href="https://www.anl.gov/phy/solaris" target="_blank"><img src="logos/SOLARIS_logo.png"></a>
<a href="https://isolde-solenoidal-spectrometer.web.cern.ch/" target="_blank"><img src="logos/ISS_logo.png"></a>
<a href="https://www.anl.gov/phy/helical-orbit-spectrometer" target="_blank"><img src="logos/HELIOS_logo.jpg"></a>
<p></p>
The simulation was started from Ben Kay (ANL) around 2010 using excel spreadsheet.
<br>
Ryan Tang (former ANL postdoc, now at FSU) developed a Monte Carlo simulation with DWBA using CERN ROOT framework.
<br>
And the whole simulation migrated to here at Dec, 2022.
<p></p>
Contact: Ryan Tang (rtang at fsu.edu)
<p> any suggestions and feedback are very welcome.</p>
<hr>
<h2> Todo : </h2>
<ul>
<li>File name of the images of past calculations include reaction</li>
<li>Change the legend position of the DWBA calcualtion</li>
<li>A 3-D simulation? </li>
</ul>
</body>
</html>

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WebSimHelper/isotopeLib.py Executable file
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#!/usr/bin/env /usr/bin/python3
import pandas as pd
import urllib.request
import re
import numpy
me = 0.51099895000 # +- 15
mp = 938.27208816 # +- 29
mn = 939.56542052 # +- 54
ma = 3727.37915
livechart = "https://nds.iaea.org/relnsd/v0/data?"
def lc_read_csv(url):
req = urllib.request.Request(url)
req.add_header('User-Agent', 'Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:77.0) Gecko/20100101 Firefox/77.0')
return pd.read_csv(urllib.request.urlopen(req))
# Read the saved CSV file back into a DataFrame
try :
haha = pd.read_csv('IAEA_NuclearData.csv')
except FileNotFoundError:
# the service URL
url = livechart + "fields=ground_states&nuclides=all"
haha = lc_read_csv(url)
haha.insert(0, 'A', haha['z'] + haha['n'])
haha.to_csv('IAEA_NuclearData.csv', index=False)
haha = pd.read_csv('IAEA_NuclearData.csv')
# print(haha.columns)
## ['A', 'z', 'n', 'symbol', 'radius', 'unc_r', 'abundance', 'unc_a',
## 'energy_shift', 'energy', 'unc_e', 'ripl_shift', 'jp', 'half_life',
## 'operator_hl', 'unc_hl', 'unit_hl', 'half_life_sec', 'unc_hls',
## 'decay_1', 'decay_1_%', 'unc_1', 'decay_2', 'decay_2_%', 'unc_2',
## 'decay_3', 'decay_3_%', 'unc_3', 'isospin', 'magnetic_dipole', 'unc_md',
## 'electric_quadrupole', 'unc_eq', 'qbm', 'unc_qb', 'qbm_n', 'unc_qbmn',
## 'qa', 'unc_qa', 'qec', 'unc_qec', 'sn', 'unc_sn', 'sp', 'unc_sp',
## 'binding', 'unc_ba', 'atomic_mass', 'unc_am', 'massexcess', 'unc_me',
## 'me_systematics', 'discovery', 'ENSDFpublicationcut-off',
## 'ENSDFauthors', 'Extraction_date']
def GetExList(ASym : str, maxEx : float):
try:
exList = lc_read_csv(livechart + "fields=levels&nuclides=" + ASym)
exJpi = exList[['energy', 'jp']]
exJpi = exJpi[exJpi['energy'] < (maxEx * 1000)]
return exJpi
except:
return pd.DataFrame()
def BreakDownName(ASym : str):
match = re.match(r'(\d+)(\D+)', ASym)
return [int(match.group(1)), match.group(2) ]
def GetAZ(ASym : str):
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
Z = int(dudu['z'].iloc[0])
return [A, Z]
except:
return [A, numpy.nan]
def GetBindingPerA(ASym : str) -> float:
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
Z = int(dudu['z'].iloc[0])
N = A - Z
return dudu['binding'].iloc[0]/1000
except:
return numpy.nan
def GetMassFromSym(ASym : str) -> float:
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
Z = int(dudu['z'].iloc[0])
N = A - Z
binding = dudu['binding'].iloc[0]/1000
return Z*mp + N*mn - binding*A
except:
return numpy.nan
def GetMassFromAZ(A : int, Z : int) -> float:
try:
dudu = haha[(haha['z']==Z) & (haha['A']==A)]
Z = int(dudu['z'].iloc[0])
N = A - Z
binding = dudu['binding'].iloc[0]/1000
return Z*mp + N*mn - binding*A
except:
return numpy.nan
def GetSymbol(A : int, Z : int) -> str:
try:
dudu = haha[(haha['z']==Z) & (haha['A']==A)]
return "%d%s" % (A , dudu['symbol'].iloc[0])
except:
return "0x"
def GetJpi(ASym : str):
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
return dudu['jp'].iloc[0]
except:
return "unknown"
def GetHalfLife(ASym : str) -> float:
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
return dudu['half_life_sec'].iloc[0]
except:
return "unknown"
def GetSn(ASym : str) -> float:
[A, Z] = GetAZ(ASym)
if numpy.isnan(Z) :
return numpy.nan
else:
mass0 = GetMassFromAZ(A, Z)
mass1 = GetMassFromAZ(A-1, Z)
return mass1 + mn - mass0
def GetSp(ASym : str):
[A, Z] = GetAZ(ASym)
if numpy.isnan(Z) :
return numpy.nan
else:
mass0 = GetMassFromAZ(A, Z)
mass1 = GetMassFromAZ(A-1, Z-1)
return mass1 + mp - mass0
def GetSa(ASym : str):
[A, Z] = GetAZ(ASym)
if numpy.isnan(Z) :
return numpy.nan
else:
mass0 = GetMassFromAZ(A, Z)
mass1 = GetMassFromAZ(A-4, Z-2)
return mass1 + ma - mass0
def PrintIso(ASym: str):
[A, Z] = GetAZ(ASym)
print("========================= ", ASym)
print("A : %d, Z : %d, N : %d" % (A, Z, A-Z))
print(" Jpi : ", GetJpi(ASym))
print("half-live : %.2f sec" % (GetHalfLife(ASym)))
print(" Mass : %9.2f MeV" % (GetMassFromSym(ASym) ))
print(" Binding : %9.2f MeV/A" % (GetBindingPerA(ASym)))
print(" Binding : %9.2f MeV" % (GetBindingPerA(ASym) * A))
print(" Sn: %9.2f MeV" % GetSn(ASym))
print(" Sp: %9.2f MeV" % GetSp(ASym))
print(" Sa: %9.2f MeV" % GetSa(ASym))
print("=============================")
def PrintIsoWeb(ASym : str):
[A, Z] = GetAZ(ASym)
print("<br>========================= ", ASym)
print("<br>A : %d, Z : %d, N : %d" % (A, Z, A-Z))
print("<br> Jpi : ", GetJpi(ASym))
print("<br>half-live : %.2f sec" % (GetHalfLife(ASym)))
print("<br> Mass : %9.2f MeV" % (GetMassFromSym(ASym) ))
print("<br> Binding : %9.2f MeV/A" % (GetBindingPerA(ASym)))
print("<br> Binding : %9.2f MeV" % (GetBindingPerA(ASym) * A))
print("<br> Sn: %9.2f MeV" % GetSn(ASym))
print("<br> Sp: %9.2f MeV" % GetSp(ASym))
print("<br> Sa: %9.2f MeV" % GetSa(ASym))
print("<br>=============================")
def PrintIsoExWeb(ASym : str, maxEx : float):
exList = GetExList(ASym, maxEx)
if exList.empty:
print("<br> cannot find Ex data")
else:
print("<table>")
for i in range(0,len(exList)):
print("<tr><td style=\"text-align:right\" width=80>%9.3f</td><td style=\"text-align:right\" width=100>%s</td></tr>" % (exList['energy'].iloc[i]/1000, exList['jp'].iloc[i].replace(' ', ',')))
print("</table>")

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43
WebSimHelper/massProxy.py Executable file
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#!/usr/bin/python3
import isotopeLib
import cgi
form = cgi.FieldStorage()
ASym = form.getvalue('ASym')
A=form.getvalue('A')
Z=form.getvalue('Z')
print( "Content-type:text/html\r\n\r\n")
if 'ASym' in form :
if ASym == "p" : ASym = "1H"
if ASym == "d" : ASym = "2H"
if ASym == "t" : ASym = "3H"
if ASym == "a" : ASym = "4He"
[A,Z] = isotopeLib.GetAZ(ASym)
if 'A' in form:
ASym = isotopeLib.GetSymbol(float(A), float(Z))
#===================================
# print(A)
# print(Z)
# print(isotopeLib.GetMassFromSym(ASym))
# print(ASym)
# print(isotopeLib.GetSn(ASym))
# print(isotopeLib.GetSp(ASym))
# print(isotopeLib.GetSa(ASym))
print(A , ",",
Z , ",",
format(isotopeLib.GetMassFromSym(ASym), '.2f'), ",",
ASym, ",",
format(isotopeLib.GetSn(ASym), '.2f'), ",",
format(isotopeLib.GetSp(ASym), '.2f'), ",",
format(isotopeLib.GetSa(ASym), '.2f')
)

287
WebSimHelper/miscCal.html Normal file
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<!DOCTYOE html>
<html>
<style>
body{
font-family: Arial, Helvetica, sans-serif;
}
table{
border-collapse: collapse;
border : 1px solid;
}
td{
padding : 4px;
}
</style>
<body>
<h1> enA, pnA, pps convertor </h1>
<table id="convertor">
<tr>
<td style="text-align:right">Charge state:</td>
<td><input type="text" id="ChargeState" size="10" value="6" enterkeyhint="done"/> </td>
</tr>
<tr>
<td style="text-align:right">Attenuation:</td>
<td><input type="text" id="att" size="10" value="1e+4" enterkeyhint="done" /> </td>
</tr>
<tr style="text-align:center">
<td>enA </td>
<td>pnA </td>
<td>pps </td>
<td>att. pps </td>
</tr>
<tr>
<td><input type="text" id='enA' size="10" value="6" enterkeyhint="done"/></td>
<td><input type="text" id="pnA" size="10" enterkeyhint="done"/></td>
<td><input type="text" id="pps" size="10" enterkeyhint="done"/></td>
<td width="100"></td>
</tr>
</table>
<h1> Yield Calculator </h1>
<table id="yieldTable">
<tr>
<td style="text-align:right"> Integrated Xsec </td>
<td><Input type="text" id="Xsec" size="10" value="4" enterkeyhint="done"/></td>
<td>mb</td>
</tr>
<tr>
<td style="text-align:right"> Beam intensity </td>
<td><Input type="text" id="BeamPPS" size="10" value="1e5" enterkeyhint="done"/></td>
<td>pps</td>
</tr>
<tr>
<td style="text-align:right"> Target thickness </td>
<td><Input type="text" id="thickness" size="10" value="100" enterkeyhint="done"/></td>
<td>ug/cm2</td>
</tr>
<tr>
<td style="text-align:right"> Target molar mass </td>
<td><Input type="text" id="molar" size="10" value="16" enterkeyhint="done"/></td>
<td>g/mol</td>
</tr>
<tr>
<td style="text-align:right"> Nucleus/molecule </td>
<td><Input type="text" id="ddd" size="10" value="2" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right"> Num of nucleus per area </td>
<td></td>
<td>count/cm2</td>
</tr>
<tr>
<td style="text-align:right"> Yield per sec </td>
<td></td>
<td>count/sec</td>
</tr>
<tr>
<td style="text-align:right"> Spectroscopic factor </td>
<td><Input type="text" id="SF" size="10" value="0.6" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right"> Wanted Count </td>
<td><Input type="text" id="wantedCount" size="10" value="1000" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right"> stat. uncertainty </td>
<td></td>
<td>%</td>
</tr>
<tr>
<td style="text-align:right"> Beam Time required </td>
<td></td>
<td>day</td>
</tr>
</table>
</body>
<script>
function toSci(xx, digi){
//return xx.toExponential(digi).replace(/e\+?/, ' x 10^');
return xx.toExponential(digi);
}
function convert(type){
let chargeState = document.getElementById('ChargeState').value;
let attenuation = document.getElementById('att').value;
let eee = 6241510000;
let table = document.getElementById('convertor');
if ( type == 1 ){
let enA = document.getElementById('enA').value;
let pnA = enA/chargeState;
let pps = pnA*eee;
var att = pps/attenuation;
document.getElementById('pnA').value = pnA;
document.getElementById('pps').value = toSci(pps,3);
}
if ( type == 2 ){
let pnA = document.getElementById('pnA').value;
let enA = pnA*chargeState;
let pps = pnA*eee;
var att = pps/attenuation;
document.getElementById('enA').value = enA;
document.getElementById('pps').value = toSci(pps,3);
}
if ( type == 3 ){
let pps = document.getElementById('pps').value;
let pnA = pps/eee;
let enA = pnA*chargeState;
var att = pps/attenuation;
document.getElementById('enA').value = enA;
document.getElementById('pnA').value = pnA;
}
table.rows[3].cells[3].innerHTML = '<span style="color:#FF0000">' + toSci(att,3) + '</span>';
}
function yieldCal(type){
let NA = 6.0221409e+23;
let mb2cm = 1e-27;
let xsec = document.getElementById('Xsec').value;
let beamPPS = document.getElementById('BeamPPS').value;
let thickness = document.getElementById('thickness').value;
let molar = document.getElementById('molar').value;
let nParticle = document.getElementById('ddd').value;
let SF = document.getElementById('SF').value;
let wantedCount = document.getElementById('wantedCount').value;
let table = document.getElementById('yieldTable');
let nTarget = thickness * NA * nParticle / molar / 1e6;
let yield = xsec * beamPPS * nTarget * mb2cm;
table.rows[5].cells[1].innerHTML = toSci(nTarget, 3);
table.rows[6].cells[1].innerHTML = yield.toPrecision(4);
let error = Math.sqrt(wantedCount)/wantedCount*100;
table.rows[9].cells[1].innerHTML = error.toPrecision(4);
let day = wantedCount / SF /yield /60/60/24;
//table.rows[10].cells[1].innerHTML = day.toPrecision(4);
table.rows[10].cells[1].innerHTML = '<span style="color:#FF0000">' + day.toPrecision(4) + '</span>';
}
convert(1);
yieldCal(1);
document.getElementById('enA').addEventListener('keypress',
function(e){
//alert( e.keyCode );
if(e.keyCode == 13 ){
convert(1);
}
}, false
);
document.getElementById('pnA').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
convert(2);
}
}, false
);
document.getElementById('pps').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
convert(3);
}
}, false
);
document.getElementById('att').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
convert(1);
}
}, false
);
document.getElementById('ChargeState').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
convert(1);
}
}, false
);
document.getElementById('Xsec').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(0);
}
}, false
);
document.getElementById('BeamPPS').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(1);
}
}, false
);
document.getElementById('thickness').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(2);
}
}, false
);
document.getElementById('molar').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(3);
}
}, false
);
document.getElementById('ddd').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(4);
}
}, false
);
document.getElementById('SF').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(5);
}
}, false
);
document.getElementById('wantedCount').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(6);
}
}, false
);
</script>
</html>

529
WebSimHelper/simpleSim.html Normal file
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<!DOCTYPE html>
<html>
<head>
<title>DWBA and Monte Carlo Simulation</title>
<link rel="icon" type="image/x-icon" href="logos/SOLARIS_favicon.png">
</head>
<style>
body {
font-family: Arial, Helvetica, sans-serif;
background: #6DB33E;
}
</style>
<body>
<h1>DWBA and Monte Carlo Simulation</h1>
<button onclick="GetClipBoard()">Paste Settings from clipboard</button>
<form action = "simpleInput.py" method = "POST" target = "uploaded">
<h3>Reaction: </h3>
<table>
<tr>
<td>Beam Energy</td>
<td><input type = "text" name = "KEA" size="6" value="10" /></td>
<td style="text-align:left">MeV/u</td>
</tr>
<tr>
<td>Beam </td>
<td><input type = "text" name = "beam_AZ" size="6" value="16O"/></td>
<td style="text-align:right">J<sup>&pi;</sup></td>
<td><input type = "text" id="beam_Jpi" name = "beam_Jpi" size="5" value="0+"/><td>
<td style="text-align:right">Ex:</td>
<td><input type = "text" name = "beam_Ex" size="6" value="0.00"/></td>
<td style="text-align:left">MeV</td>
</tr>
<tr>
<td>Target</td>
<td><input type = "text" name = "target_AZ" size="6" value="d"/></td>
</tr>
<tr>
<td>Light recoil</td>
<td><input type = "text" name = "lRecoil_AZ" size="6" value="p"/></td>
</tr>
<tr>
<td> Number of events </td>
<td><input type = "text" name = "numEvent" size="6" value="100000"/></td>
</tr>
</table>
<h3>Detector:</h3>
<table>
<tr>
<input type="radio" name="SSType" value="HELIOS"/>HELIOS
<br>
<input type="radio" name="SSType" value="SOLARIS" checked="checked"/>SOLARIS
<br>
<input type="radio" name="SSType" value="ISS"/>ISS
</tr>
<tr>
<td>B-field </td>
<td><input type = "text" name = "BField" size="5" value="-2.5"/></td>
<td style="text-align:left">T (minus sign = field point to upstream)</td>
</tr>
<tr>
<td>Array Pos.</td>
<td><input type = "text" name = "posArray" size="5" value="-100"/></td>
<td style="text-align:left">mm (negative for upstream)</td>
</tr>
<tr>
<td>Recoil Pos.</td>
<td><input type = "text" name = "posRecoil" size="5" value="500"/></td>
<td style="text-align:left">mm (negative for upstream)</td>
</tr>
</table>
<h3>DWBA and E<sub>x</sub> List:</h3>
<p><b style="color:red;">For 2-nucleon transfer</b>, <b>Orbital</b> take the form NL=X, where N is number of node, X is momentum number. n and L are related by &Sigma;<sub>i</sub> (2n<sub>i</sub>+l<sub>i</sub>) = 2N + X + 2n + l, where n<sub>i</sub> and l<sub>i</sub> are the principle number and orbital angular momentum of the each transfered nucleon, and n and l are the internal quanta of the 2-nucleon. e.g. (t,p) reaction to 0f orbtial, the left-hand side would be n<sub>i</sub> = 0 and l<sub>i</sub> = 3 and the sum is 3+3 = 6 = 2N + X + 2n+l. Assume n = l = 0, we have 6 = 2N+L. Thus, 3L=0, 2L=2,1L=4, 0L=6. </p>
TODO: guess the orbital
<br>
<input type="checkbox" id="pos" onclick="checkParity()" checked/>Positive parity</td>
<input type="checkbox" id="neg" onclick="checkParity()" checked/>Negative parity</td>
<input type="checkbox" id="unk" onclick="checkParity()" checked/>Unknown parity</td>
<br>
<button type="button" onclick="addStates()">Add known states</button>
Isotope: <input type="text" id="AZ" size="5" value="17O"/>
Max Ex: <input type="text" id="maxEx" size="5" value="5"/>MeV
<p id='waiting'></p>
<table id="ExTable">
<tr>
<td><b> E<sub>x</sub> [MeV] </b></td>
<td><b> &nbsp;&nbsp;&nbsp;J<sup>&#960;</sup></b></td>
<td><b> Orbital </b></td>
</tr>
</tr>
<td><input type="text" name="Ex" size="5" value="0"/></td>
<td><input type="text" name="Jpi" size="5" value="3/2+"/></td>
<td><input type="text" name="Orb" size="6" value="0d3/2"/></td>
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td>
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td>
</tr>
<tr>
<td></td>
<td></td>
<td></td>
<td><button type="button" onclick="copyEx()">Copy Ex</button></td>
<td><button type="button" onclick="pasteEx()">&nbsp; Paste Ex &nbsp;</button></td>
</tr>
</table>
<p></p>
<input type="checkbox" name="DWBA" value="On"/>Cal. DWBA
<!--<input type="checkbox" name="onlyDWBA" value="On"/>ONLY Cal. DWBA (tetsing)-->
<table>
<tr>
<td>Incoming Channel</td>
<td>
<select name="op1">
<option value="A" selected>D | An & Cai (2006) E < 183, 12 < A < 238</option>
<option value="H">D | Han, Shi, & Shen (2006) E < 200, 12 < A < 209</option>
<option value="B">D | Bojowald et al. (1988) 50 < E < 80, 27 < A < 208</option>
<option value="D">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (REL) </option>
<option value="C">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (NON-REL) </option>
<option value="L">D | Lohr and Haeberli (1974) 9 < E < 13, 40 < A </option>
<option value="Q">D | Perey and Perey (1963) 12 < E < 25, 40 < A </option>
<option value="Z">D | Zhang, Pang, Lou (2016) 5 < E < 170, A < 18, spe 6-7Li </option>
<option value="K">P | Koning & Delaroche (2009) E < 200, 24 < A < 209 | Iso.Dep.</option>
<option value="V">P | Varner et al. (1991) 16 < E < 65, 4 < A < 209</option>
<option value="M">P | Menet et al. (1971) 30 < E < 60, 40 < A </option>
<option value="G">P | Becchetti and Greenlees (1969) E < 50, 40 < A </option>
<option value="P">P | Perey (1963) E < 20, 30 < A < 100 </option>
<option value="x">A=3 | Xu, Guo, Han, & Shen (2011) E < 250, 20 < A < 209 </option>
<option value="l">A=3 | Liang, Li, & Cai (2009) E < 270, All masses </option>
<option value="p">A=3 | Pang et al. (2009) all E, all masses, Iso. Dep. </option>
<option value="c">A=3 | Li, Liang, Cai (2007), E < 40, 48 < A < 232, Tritons </option>
<option value="t">A=3 | Trost et al. (1987) 10 < E < 220, 10 < A < 208 </option>
<option value="h">A=3 | Hyakutake et al. (1980) 90 < E < 120, About 58 < A < 92 </option>
<option value="b">A=3 | Becchetti and Greenlees (1971), E < 40, 40 < A, Iso. Dep. </option>
<option value="s">A=4 | Su & Han (2015) E < 398, 20 < A < 209 </option>
<option value="a">A=4 | Avrigeanu et al. (2009) </option>
<option value="f">A=4 | Bassani and Picard (1969) 24 < E < 31, A = 90 </option>
</select>
<td>
</tr>
<tr>
<td>Outgoing Channel</td>
<td>
<select name="op2">
<option value="A">D | An & Cai (2006) E < 183, 12 < A < 238</option>
<option value="H">D | Han, Shi, & Shen (2006) E < 200, 12 < A < 209</option>
<option value="B">D | Bojowald et al. (1988) 50 < E < 80, 27 < A < 208</option>
<option value="D">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (REL) </option>
<option value="C">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (NON-REL) </option>
<option value="L">D | Lohr and Haeberli (1974) 9 < E < 13, 40 < A </option>
<option value="Q">D | Perey and Perey (1963) 12 < E < 25, 40 < A </option>
<option value="Z">D | Zhang, Pang, Lou (2016) 5 < E < 170, A < 18, spe 6-7Li </option>
<option value="K" selected>P | Koning & Delaroche (2009) E < 200, 24 < A < 209, Iso.Dep.</option>
<option value="V">P | Varner et al. (1991) 16 < E < 65, 4 < A < 209</option>
<option value="M">P | Menet et al. (1971) 30 < E < 60, 40 < A </option>
<option value="G">P | Becchetti and Greenlees (1969) E < 50, 40 < A </option>
<option value="P">P | Perey (1963) E < 20, 30 < A < 100 </option>
<option value="x">A=3 | Xu, Guo, Han, & Shen (2011) E < 250, 20 < A < 209 </option>
<option value="l">A=3 | Liang, Li, & Cai (2009) E < 270, All masses </option>
<option value="p">A=3 | Pang et al. (2009) all E | all masses, Iso. Dep. </option>
<option value="c">A=3 | Li, Liang, Cai (2007), E < 40, 48 < A < 232, Tritons </option>
<option value="t">A=3 | Trost et al. (1987) 10 < E < 220, 10 < A < 208 </option>
<option value="h">A=3 | Hyakutake et al. (1980) 90 < E < 120, About 58 < A < 92 </option>
<option value="b">A=3 | Becchetti and Greenlees (1971), E < 40, 40 < A, Iso. Dep. </option>
<option value="s">A=4 | Su & Han (2015) E < 398, 20 < A < 209 </option>
<option value="a">A=4 | Avrigeanu et al. (2009) </option>
<option value="f">A=4 | Bassani and Picard (1969) 24 < E < 31, A = 90 </option>
</select>
<td>
</tr>
</table>
<table>
<tr>
<input type="checkbox" name="onlyDWBA" value="On"/>Only DWBA and Don't Sim. Angle range (for only DWBA)
</tr>
<tr>
<td>Min [deg]: </td>
<td><input type = "text" name = "minAng" size="6" value="0" /></td>
<td>Max [deg]: </td>
<td><input type = "text" name = "maxAng" size="6" value="90"/></td>
</tr>
</table>
<h3> Plot config:</h3>
<table>
<tr>
<td><input type="checkbox" name="plot" value="pEZ" checked/>E vs Z</td>
<td><input type="checkbox" name="plot" value="pExCal" checked/>Ex (cal.)</td>
<td><input type="checkbox" name="plot" value="pThetaCM" checked/>ThetaCM</td>
</tr>
<tr>
<td><input type="checkbox" name="plot" value="pThetaCM_Z" checked/>ThetaCM vs Z</td>
<td><input type="checkbox" name="plot" value="pRecoilXY" checked/>Recoil X vs Y</td>
<td><input type="checkbox" name="plot" value="pRecoilRThetaCM"/>Recoil-R vs ThetaCM</td>
</tr>
<tr>
<td><input type="checkbox" name="plot" value="pRecoilRZ"/>Recoil R vs Z</td>
<td><input type="checkbox" name="plot" value="pTDiffZ"/>Time diff vs Z</td>
<td><input type="checkbox" name="plot" value="pArrayXY"/>Array X vs Y</td>
</tr>
</table>
<p></p>
<input type="checkbox" name="gate" value="hit==1" checked/>Array Hit<br>
<input type="checkbox" name="gate" value="loop<=1" checked/>Loop = 1<br>
<input type="checkbox" name="gate" value="thetaCM>10" checked/> ThetaCM > 10 deg<br>
<p></p>
<input type = "submit" value = "Run DWBA and Simulation" style="width:200px;height:60px;" formtarget="_blank"/>
</form>
<hr style="height:4px;background-color:#F7CF3C; border-style:none; border-width:none">
<h2>Advanced control</h2>
<!-- ////////////////////////////////////////// -->
<table>
<tr>
<td>Download Sample files:</td>
<td style="text-align:left">
<a href="sample_files/reactionConfig_sample.txt" download="reactionConfig.txt">Reaction File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/detectorGeo_SOLARIS_sample.txt" download="detectorGeo_SOLAIRS.txt">DetectorGeo (SOLARIS) File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/detectorGeo_HELIOS_sample.txt" download="detectorGeo_HELIOS.txt">DetectorGeo (HELIOS) File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/Ex_sample.txt" download="Ex.txt">Ex File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/DWBA_sample.txt" download="DWBA">DWBA File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/PlotConfig_sample.txt" download="PlotConfig.txt">Plot Config File</a>
</td>
</tr>
</table>
<p></p><!-- ////////////////////////////////////////// -->
<form enctype = "multipart/form-data" action = "Simulation_gateway.py" method = "post" target="uploaded">
<table>
<tr>
<td style="text-align:right" width="200">Reaction File </td>
<td><input type = "file" name = "filename1" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">DetectorGeo File </th>
<td><input type = "file" name = "filename2" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">Ex File </th>
<td><input type = "file" name = "filename3" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">DWBA File ^ </th>
<td><input type = "file" name = "filename4" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">*.in File ^ </th>
<td><input type = "file" name = "filename4a" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">Plot Config File # </th>
<td><input type = "file" name = "filename5" /> </td>
</tr>
<tr>
<td>^ can be alone <br># can be omitted</th>
<td><input type = "submit" value = "Upload & Run Simulation" style="height:50px; width:200px" formtarget="_blank"/> </td>
</tr>
</table>
</form>
<ul>
<li>File name can be customized.</li>
<li>For kinematic simulation, only the reactionConfig.txt, detectorGeo.txt, and Ex.txt are needed.</li>
<li>For DWBA calculation, only the DWBA file is needed.</li>
<li>If reactionConfig.txt, detectorGeo.txt, and DWBA file are presented, will do DWBA and use the result for simulation.</li>
<li>When the DWBA file is presented, the kinematic simulation will use the DWBA result and also the excitation energy. i.e. the user provide Ex.txt will not be used.</li>
<li>User can use a customs in File for DWBA calculation. Once the in File exist, it ignores the DWBA file.</li>
<li>To change DWBA angular range, download the in file, edit it. But becareful, DWBA for kinematic simulation must be 0 -180 deg.</li>
</ul>
<hr style="height:4px;background-color:#F7CF3C; border-style:none; border-width:none">
The source code for calculation can be found in <a href="https://github.com/calemhoffman/digios/tree/master/analysis/Cleopatra/Transfer.C" target="_blank">Here</a>
</body>
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let maxEx = document.getElementById('maxEx').value;
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