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.DS_Store vendored Normal file
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16
.gitignore vendored
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@ -1,5 +1,6 @@
working/Logs working/Logs
EventBuilder
*.root *.root
*.pcm *.pcm
*.d *.d
@ -7,16 +8,9 @@ working/Logs
.gdb_history .gdb_history
data
data_raw data_raw
root_data root_data
*.in
*.out
*.txt
*.csv
*.dat
Cleopatra/ExtractXSec Cleopatra/ExtractXSec
Cleopatra/ExtractXSecFromText Cleopatra/ExtractXSecFromText
Cleopatra/FindThetaCM Cleopatra/FindThetaCM
@ -25,10 +19,4 @@ Cleopatra/Isotope
Cleopatra/IsotopeShort Cleopatra/IsotopeShort
Cleopatra/PlotSimulation Cleopatra/PlotSimulation
Cleopatra/PlotTGraphTObjArray Cleopatra/PlotTGraphTObjArray
Cleopatra/SimAlpha Cleopatra/Transfer
Cleopatra/SimTransfer
Cleopatra/SimTransfer_single
Cleopatra/Cleopatra
__pycache__
*.DS_Store

7
.vscode/c_cpp_properties.json vendored
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@ -4,9 +4,12 @@
"name": "Mac", "name": "Mac",
"includePath": [ "includePath": [
"${workspaceFolder}/**", "${workspaceFolder}/**",
"/Applications/root_v6.30.06/include/**" "/Applications/root_v6.28.02/include/**"
], ],
"defines": [], "defines": [],
"macFrameworkPath": [
"/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/System/Library/Frameworks"
],
"compilerPath": "/usr/bin/g++", "compilerPath": "/usr/bin/g++",
"cStandard": "c17", "cStandard": "c17",
"cppStandard": "c++17", "cppStandard": "c++17",
@ -29,7 +32,7 @@
"name": "WinLinux", "name": "WinLinux",
"includePath": [ "includePath": [
"${workspaceFolder}/**", "${workspaceFolder}/**",
"/home/ryan/root_v6.30.06/include/**" "/home/ryan/Downloads/root/include/**"
], ],
"defines": [], "defines": [],
"compilerPath": "/usr/bin/gcc", "compilerPath": "/usr/bin/gcc",

134
.vscode/settings.json vendored
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@ -1,13 +1,129 @@
{ {
"files.associations": { "files.associations": {
"detectorGeo.txt": "shellscript", "script.C": "cpp",
"reactionConfig.txt": "shellscript", "SOLARIS_Qt6_DAQ.pro": "makefile",
"DWBA": "shellscript", "qlineseries": "cpp",
"SimChecker_Config.txt": "fsharp", "cctype": "cpp",
"*.C": "cpp" "clocale": "cpp",
"cmath": "cpp",
"cstdarg": "cpp",
"cstddef": "cpp",
"cstdio": "cpp",
"cstdlib": "cpp",
"cstring": "cpp",
"ctime": "cpp",
"cwchar": "cpp",
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"atomic": "cpp",
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"*.tcc": "cpp",
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"iomanip": "cpp",
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"limits": "cpp",
"mutex": "cpp",
"new": "cpp",
"numbers": "cpp",
"ostream": "cpp",
"semaphore": "cpp",
"span": "cpp",
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"stdexcept": "cpp",
"stop_token": "cpp",
"streambuf": "cpp",
"thread": "cpp",
"cinttypes": "cpp",
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"variant": "cpp",
"qdatetime": "cpp",
"fstream": "cpp",
"allocator": "cpp",
"qsignalmapper": "cpp",
"GeneralSort.C": "cpp",
"ChainMonitors.C": "cpp",
"GeneralSortAgent.C": "cpp",
"readRawTrace.C": "cpp",
"readTrace.C": "cpp",
"Cleopatra.C": "cpp",
"alpha.C": "cpp",
"DWBA_compare.C": "cpp",
"DWBARatio.C": "cpp",
"ExtractXSec.C": "cpp",
"ExtractXSecFromText.C": "cpp",
"FindThetaCM.C": "cpp",
"InFileCreator.C": "cpp",
"IsotopeShort.C": "cpp",
"knockout.C": "cpp",
"PlotSimulation.C": "cpp",
"PlotTGraphTObjArray.C": "cpp",
"transfer_test.C": "cpp",
"Transfer.C": "cpp",
"Simulation_Helper.C": "cpp",
"Check_Simulation.C": "cpp",
"AutoFit.C": "cpp",
"__hash_table": "cpp",
"__split_buffer": "cpp",
"__tree": "cpp",
"bitset": "cpp",
"stack": "cpp",
"Monitor.C": "cpp",
"DataHoSei.C": "cpp",
"Monitors.C": "cpp",
"__bit_reference": "cpp",
"__bits": "cpp",
"__config": "cpp",
"__debug": "cpp",
"__errc": "cpp",
"__locale": "cpp",
"__mutex_base": "cpp",
"__node_handle": "cpp",
"__nullptr": "cpp",
"__string": "cpp",
"__threading_support": "cpp",
"__tuple": "cpp",
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"forward_list": "cpp",
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"locale": "cpp",
"__verbose_abort": "cpp",
"Monitors_Util.C": "cpp",
"Monitor_Util.C": "cpp",
"script_single.C": "cpp",
"script_multi.C": "cpp"
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"C_Cpp.autoAddFileAssociations": false,
"better-comments.multilineComments": true, "better-comments.multilineComments": true,
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{ {
@ -20,10 +136,10 @@
}, },
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"tag": "?", "tag": "?",
"color": "#1FE0CB", "color": "#0076FF",
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"backgroundColor": "transparent", "backgroundColor": "transparent",
"bold": true, "bold": false,
"italic": false "italic": false
}, },
{ {

392
Armory/AnalysisLib.h
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@ -1,392 +0,0 @@
#ifndef ANALYSIS_LIB_H
#define ANALYSIS_LIB_H
#include <cstdio>
#include <vector>
#include <fstream>
#include <string>
#include <iostream>
#include <TMacro.h>
#include <TList.h>
#include <TFile.h>
#include <TMath.h>
#include <TObjArray.h>
#include <TCutG.h>
#include <TGraph.h>
namespace AnalysisLib {
//*######################################### Execute Python Script
std::vector<std::string> executePythonScript(std::string command) {
std::vector<std::string> result;
printf("Python : %s \n", command.c_str());
FILE* pipe = popen(command.c_str(), "r");
if (!pipe) {
std::cerr << "Failed to open pipe for command: " << command << std::endl;
return result;
}
constexpr int buffer_size = 256;
char buffer[buffer_size];
while (fgets(buffer, buffer_size, pipe) != nullptr) {
result.emplace_back(buffer);
}
pclose(pipe);
return result;
}
//*######################################### TRAPEZOID
TGraph * TrapezoidFilter(TGraph * trace, int baseLineEnd = 80, int riseTime = 10, int flatTop = 20, float decayTime = 2000){
///Trapezoid filter https://doi.org/10.1016/0168-9002(94)91652-7
TGraph * trapezoid = new TGraph();
trapezoid->Clear();
///find baseline;
double baseline = 0;
for( int i = 0; i < baseLineEnd; i++){
baseline += trace->Eval(i);
}
baseline = baseline*1./baseLineEnd;
int length = trace->GetN();
double pn = 0.;
double sn = 0.;
for( int i = 0; i < length ; i++){
double dlk = trace->Eval(i) - baseline;
if( i - riseTime >= 0 ) dlk -= trace->Eval(i - riseTime) - baseline;
if( i - flatTop - riseTime >= 0 ) dlk -= trace->Eval(i - flatTop - riseTime) - baseline;
if( i - flatTop - 2*riseTime >= 0) dlk += trace->Eval(i - flatTop - 2*riseTime) - baseline;
if( i == 0 ){
pn = dlk;
sn = pn + dlk*decayTime;
}else{
pn = pn + dlk;
sn = sn + pn + dlk*decayTime;
}
trapezoid->SetPoint(i, i, sn / decayTime / riseTime);
}
return trapezoid;
}
bool isEmptyOrSpaces(const std::string& str) {
if (str.empty()) {
return true;
}
for (char c : str) {
if (!std::isspace(c)) {
return false;
}
}
return true;
}
std::vector<std::string> SplitStr(std::string tempLine, std::string splitter, int shift = 0){
std::vector<std::string> output;
size_t pos;
do{
pos = tempLine.find(splitter); /// fine splitter
if( pos == 0 ){ ///check if it is splitter again
tempLine = tempLine.substr(pos+1);
continue;
}
std::string secStr;
if( pos == std::string::npos ){
secStr = tempLine;
}else{
secStr = tempLine.substr(0, pos+shift);
tempLine = tempLine.substr(pos+shift);
}
///check if secStr is begin with space
while( secStr.substr(0, 1) == " ") secStr = secStr.substr(1);
///check if secStr is end with space
while( secStr.back() == ' ') secStr = secStr.substr(0, secStr.size()-1);
output.push_back(secStr);
///printf(" |%s---\n", secStr.c_str());
}while(pos != std::string::npos );
return output;
};
//************************************** TCutG
TObjArray * LoadListOfTCut(TString fileName, TString cutName = "cutList"){
if( fileName == "" ) return nullptr;
TObjArray * cutList = nullptr;
TFile * fCut = new TFile(fileName);
bool isCutFileOpen = fCut->IsOpen();
if(!isCutFileOpen) {
printf( "Failed to open rdt-cutfile 1 : %s\n" , fileName.Data());
}else{
cutList = (TObjArray *) fCut->FindObjectAny(cutName);
if( cutList ){
int numCut = cutList->GetEntries();
printf("=========== found %d cutG in %s \n", numCut, fCut->GetName());
for(int i = 0; i < numCut ; i++){
printf("cut name : %s , VarX: %s, VarY: %s, numPoints: %d \n",
cutList->At(i)->GetName(),
((TCutG*)cutList->At(i))->GetVarX(),
((TCutG*)cutList->At(i))->GetVarY(),
((TCutG*)cutList->At(i))->GetN()
);
}
}
}
return cutList;
}
TCutG * LoadSingleTCut( TString fileName, TString cutName = "cutEZ"){
if( fileName == "" ) return nullptr;
TCutG * cut = nullptr;
TFile * fCut = new TFile(fileName);
bool isCutFileOpen = fCut->IsOpen();
if( !isCutFileOpen) {
printf( "Failed to open E-Z cutfile : %s\n" , fileName.Data());
}else{
cut = (TCutG *) fCut->FindObjectAny(cutName);
if( cut != NULL ) {
printf("Found EZ cut| name : %s, VarX: %s, VarY: %s, numPoints: %d \n",
cut->GetName(),
cut->GetVarX(),
cut->GetVarY(),
cut->GetN()
);
}
}
return cut;
}
//************************************** Others
std::vector<std::vector<double>> combination(std::vector<double> arr, int r){
std::vector<std::vector<double>> output;
int n = arr.size();
std::vector<int> v(n);
std::fill(v.begin(), v.begin()+r, 1);
do {
//for( int i = 0; i < n; i++) { printf("%d ", v[i]); }; printf("\n");
std::vector<double> temp;
for (int i = 0; i < n; ++i) {
if (v[i]) {
//printf("%.1f, ", arr[i]);
temp.push_back(arr[i]);
}
}
//printf("\n");
output.push_back(temp);
} while (std::prev_permutation(v.begin(), v.end()));
return output;
}
double* sumMeanVar(std::vector<double> data){
int n = data.size();
double sum = 0;
for( int k = 0; k < n; k++) sum += data[k];
double mean = sum/n;
double var = 0;
for( int k = 0; k < n; k++) var += pow(data[k] - mean,2);
static double output[3];
output[0] = sum;
output[1] = mean;
output[2] = var;
return output;
}
double* fitSlopeIntercept(std::vector<double> dataX, std::vector<double> dataY){
double * smvY = sumMeanVar(dataY);
double sumY = smvY[0];
double meanY = smvY[1];
double * smvX = sumMeanVar(dataX);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
int n = dataX.size();
double sumXY = 0;
for( int j = 0; j < n; j++) sumXY += dataX[j] * dataY[j];
double slope = ( sumXY - sumX * sumY/n ) / varX;
double intercept = meanY - slope * meanX;
static double output[2];
output[0] = slope;
output[1] = intercept;
return output;
}
std::vector<std::vector<double>> FindMatchingPair(std::vector<double> enX, std::vector<double> enY){
//output[0] = fitEnergy;
//output[1] = refEnergy;
int nX = enX.size();
int nY = enY.size();
std::vector<double> fitEnergy;
std::vector<double> refEnergy;
if( nX > nY ){
std::vector<std::vector<double>> output = combination(enX, nY);
double * smvY = sumMeanVar(enY);
double sumY = smvY[0];
double meanY = smvY[1];
double varY = smvY[2];
double optRSquared = 0;
double absRSqMinusOne = 1;
int maxID = 0;
for( int k = 0; k < (int) output.size(); k++){
double * smvX = sumMeanVar(output[k]);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
double sumXY = 0;
for( int j = 0; j < nY; j++) sumXY += output[k][j] * enY[j];
double rSq = abs(sumXY - sumX*sumY/nY)/sqrt(varX*varY);
//for( int j = 0; j < nY ; j++){ printf("%.1f, ", output[k][j]); }; printf("| %.10f\n", rSq);
if( abs(rSq-1) < absRSqMinusOne ) {
absRSqMinusOne = abs(rSq-1);
optRSquared = rSq;
maxID = k;
}
}
fitEnergy = output[maxID];
refEnergy = enY;
printf(" R^2 : %.20f\n", optRSquared);
//calculation fitting coefficient
//double * si = fitSlopeIntercept(fitEnergy, refEnergy);
//printf( " y = %.4f x + %.4f\n", si[0], si[1]);
}else if( nX < nY ){
std::vector<std::vector<double>> output = combination(enY, nX);
double * smvX = sumMeanVar(enX);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
double optRSquared = 0;
double absRSqMinusOne = 1;
int maxID = 0;
for( int k = 0; k < (int) output.size(); k++){
double * smvY = sumMeanVar(output[k]);
double sumY = smvY[0];
double meanY = smvY[1];
double varY = smvY[2];
double sumXY = 0;
for( int j = 0; j < nX; j++) sumXY += output[k][j] * enX[j];
double rSq = abs(sumXY - sumX*sumY/nX)/sqrt(varX*varY);
//for( int j = 0; j < nX ; j++){ printf("%.1f, ", output[k][j]); }; printf("| %.10f\n", rSq);
if( abs(rSq-1) < absRSqMinusOne ) {
absRSqMinusOne = abs(rSq-1);
optRSquared = rSq;
maxID = k;
}
}
fitEnergy = enX;
refEnergy = output[maxID];
printf(" R^2 : %.20f\n", optRSquared);
}else{
fitEnergy = enX;
refEnergy = enY;
//if nX == nY, ther could be cases that only partial enX and enY are matched.
}
printf("fitEnergy = ");for( int k = 0; k < (int) fitEnergy.size() ; k++){ printf("%7.2f, ", fitEnergy[k]); }; printf("\n");
printf("refEnergy = ");for( int k = 0; k < (int) refEnergy.size() ; k++){ printf("%7.2f, ", refEnergy[k]); }; printf("\n");
std::vector<std::vector<double>> haha;
haha.push_back(fitEnergy);
haha.push_back(refEnergy);
return haha;
}
std::string create_range_string(const std::vector<int>& nums) {
std::string range_str;
int lastNum = nums[0];
int rangeStart = lastNum;
for (int i = 1; i < (int) nums.size(); i++) {
if (nums[i] == lastNum + 1) {
lastNum = nums[i];
} else {
if (rangeStart == lastNum) {
range_str += std::to_string(rangeStart) + "_";
} else {
range_str += std::to_string(rangeStart) + "-" + std::to_string(lastNum) + "_";
}
rangeStart = lastNum = nums[i];
}
}
// Add the last range
if (rangeStart == lastNum) {
range_str += std::to_string(rangeStart);
} else {
range_str += std::to_string(rangeStart) + "-" + std::to_string(lastNum);
}
return range_str;
}
}
#endif

175
Armory/ClassCorrParas.h
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@ -1,175 +0,0 @@
#ifndef Parameters_H
#define Parameters_H
//************************************** Correction parameters;
class CorrParas {
private:
int defaultSize;
public:
CorrParas(int defaultSize = 100){
is_xn_OK = false;
is_xfxne_OK = false;
is_e_OK = false;
is_xScale_OK = false;
is_rdt_OK = false;
this->defaultSize = defaultSize;
};
void LoadAllCorrections(){
LoadXNCorr();
LoadXFXN2ECorr();
LoadECorr();
LoadXScaleCorr();
LoadRDTCorr();
}
void CheckCorrParasSize(size_t arraySize, size_t rdtSize){
printf("------------ Check Correction parameter sizes\n");
if( is_xn_OK && xnCorr.size() < arraySize ) {
printf(" xnCorr [%zu] < array size %zu. Set xnCorr[1..99] = 1.0 \n", xnCorr.size(), arraySize);
for( int i = 0; i < defaultSize; i++ ) xnCorr.push_back(1.0);
is_xn_OK = false;
}
if( is_xfxne_OK && xfxneCorr.size() < arraySize ) {
printf(" xfxneCorr [%zu] < array size %zu. Set xfxneCorr[1..99] = (0.0, 1.0) \n", xfxneCorr.size(), arraySize);
for( int i = 0; i < defaultSize; i++ ) xfxneCorr.push_back({0.0, 1.0});
is_xScale_OK = false;
}
if( is_e_OK && eCorr.size() < arraySize ) {
printf(" eCorr [%zu] < array size %zu. Set eCorr[1..99] = (1.0, 0.0) \n", xnCorr.size(), arraySize);
for( int i = 0; i < defaultSize; i++ ) eCorr.push_back({1.0, 0.0});
is_e_OK = false;
}
if( is_xScale_OK && xScale.size() < arraySize ) {
printf(" xScale [%zu] < array size %zu. Set xScale[1..99] = 1.0 \n", xScale.size(), arraySize);
for( int i = 0; i < defaultSize; i++ ) xScale.push_back(1.0);
is_xScale_OK = false;
}
if( is_rdt_OK && rdtCorr.size() < rdtSize ) {
printf(" rdtCorr [%zu] < array size %zu. Set rdtScale[1..99] = (0.0, 1.0) \n", rdtCorr.size(), arraySize);
for( int i = 0; i < defaultSize; i++ ) rdtCorr.push_back({0.0, 1.0});
is_rdt_OK = false;
}
printf("------------ Done Check Corr. Para. Size.\n");
}
bool is_xn_OK;
bool is_xfxne_OK;
bool is_e_OK;
bool is_xScale_OK;
bool is_rdt_OK;
std::vector<float> xnCorr; //correction of xn to match xf
std::vector<std::vector<float>> xfxneCorr; //correction of xn and xf to match e
std::vector<std::vector<float>> eCorr; // correction to e, ch -> MeV
std::vector<float> xScale; // correction of x to be (0,1)
std::vector<std::vector<float>> rdtCorr; // correction of rdt, ch -> MeV
//~========================================= xf = xn correction
void LoadXNCorr(bool verbose = false, const char * fileName = "correction_xf_xn.dat"){
printf(" loading xf-xn correction.");
xnCorr.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a;
while( file >> a ) xnCorr.push_back(a);
printf(".......... done. size:%zu\n", xnCorr.size());
is_xn_OK = true;
}else{
for( int i = 0; i < defaultSize; i++ ) xnCorr.push_back(1.0);
printf(".......... fail. xnCorr[1..99] = 1.0\n");
is_xn_OK = false;
}
file.close();
if( verbose ) for(int i = 0; i < (int) xnCorr.size(); i++) printf("%2d | %10.3f\n", i, xnCorr[i]);
}
//~========================================= X-Scale correction
void LoadXScaleCorr(bool verbose = false, const char * fileName = "correction_scaleX.dat"){
printf(" loading x-Scale correction.");
xScale.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a;
while( file >> a ) xScale.push_back(a);
printf("........ done. size:%zu\n", xScale.size());
is_xScale_OK = true;
}else{
for( int i = 0; i < defaultSize; i++ ) xScale.push_back(1.0);
printf("........ fail. xScale[1..99] = 1.0\n");
is_xScale_OK = false;
}
file.close();
if( verbose ) for(int i = 0; i < (int) xScale.size(); i++) printf("%2d | %10.3f\n", i, xnCorr[i]);
}
//~========================================= e = xf + xn correction
void LoadXFXN2ECorr(bool verbose = false, const char * fileName = "correction_xfxn_e.dat"){
printf(" loading xf/xn-e correction.");
xfxneCorr.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a, b;
while( file >> a >> b) xfxneCorr.push_back({a, b});
printf("........ done. size:%zu\n", xfxneCorr.size());
is_xfxne_OK = true;
}else{
for( int i = 0; i < defaultSize; i++ ) xfxneCorr.push_back({0.0, 1.0});
printf("........ fail. xfxneCorr[1..99] = (0.0, 1.0)\n");
is_xfxne_OK = false;
}
file.close();
if( verbose ) for(int i = 0; i < (int) xfxneCorr.size(); i++) printf("%2d | %10.3f, %10.3f\n", i, xfxneCorr[i][0], xfxneCorr[i][1]);
}
//~========================================= e correction
void LoadECorr(bool verbose = false, const char * fileName = "correction_e.dat"){
printf(" loading e correction.");
eCorr.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a, b;
while( file >> a >> b) eCorr.push_back( {a, b} ); // 1/a1, a0 , e' = e * a1 + a0
printf(".............. done. size:%zu\n", eCorr.size());
is_e_OK = true;
}else{
for( int i = 0; i < defaultSize; i++ ) eCorr.push_back( {1.0, 0.0} );
printf(".............. fail. eCorr[1..99] = (1.0, 0.0) \n");
is_e_OK = false;
}
file.close();
if( verbose ) for(int i = 0; i < (int) eCorr.size(); i++) printf("%2d | %10.3f, %10.3f\n", i, eCorr[i][0], eCorr[i][1]);
}
//~========================================= rdt correction
void LoadRDTCorr(bool verbose = false, const char * fileName = "correction_rdt.dat"){
printf(" loading rdt correction.");
rdtCorr.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a, b;
while( file >> a >> b) rdtCorr.push_back({a, b});
printf("............ done. size:%zu\n", rdtCorr.size());
is_rdt_OK = true;
}else{
for( int i = 0; i < defaultSize; i++ ) rdtCorr.push_back( {0.0, 1.0} );
printf("............ fail. rdtCorr[1..99] = (0.0, 1.0)\n");
is_rdt_OK = false;
}
file.close();
if( verbose ) for(int i = 0; i < (int) rdtCorr.size(); i++) printf("%2d | %10.3f, %10.3f\n", i, rdtCorr[i][0], rdtCorr[i][1]);
}
};
#endif

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Armory/ClassDetGeo.h
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#ifndef ClassDetGeo_H
#define ClassDetGeo_H
#include <stdio.h> /// for FILE
#include <cstdlib>
#include <string>
#include <vector>
#include <unistd.h>
#include "TMath.h"
#include "TString.h"
#include "TMacro.h"
#include "AnalysisLib.h"
struct Array{
bool enable;
double detPerpDist; /// distance from axis
double detWidth; /// width
double detLength; /// length
double blocker;
double firstPos; /// meter
double eSigma; /// intrinsic energy resolution MeV
double zSigma; /// intrinsic position resolution mm
bool detFaceOut; ///detector_facing_Out_or_In
std::vector<double> pos; /// realtive position in meter
int colDet, rowDet; /// colDet = number of different pos, rowDet, number of same pos
std::vector<double> detPos; ///absolute position of detector
int numDet; /// colDet * rowDet
double zMin, zMax;
void DeduceAbsolutePos(){
colDet = pos.size();
numDet = colDet * rowDet;
detPos.clear();
for(int id = 0; id < colDet; id++){
if( firstPos > 0 ) detPos.push_back(firstPos + pos[id]);
if( firstPos < 0 ) detPos.push_back(firstPos - pos[colDet - 1 - id]);
// printf("%d | %f, %f \n", id, pos[id], detPos[id]);
}
zMin = TMath::Min(detPos.front(), detPos.back()) - (firstPos < 0 ? detLength : 0);
zMax = TMath::Max(detPos.front(), detPos.back()) + (firstPos > 0 ? detLength : 0);
}
void Print() const{
printf("------------------------------- Array\n");
for(int i = 0; i < colDet ; i++){
if( firstPos > 0 ){
printf("%d, %8.2f mm - %8.2f mm \n", i, detPos[i], detPos[i] + detLength);
}else{
printf("%d, %8.2f mm - %8.2f mm \n", i, detPos[i] - detLength , detPos[i]);
}
}
printf(" Blocker Position: %8.2f mm \n", firstPos > 0 ? firstPos - blocker : firstPos + blocker );
printf(" First Position: %8.2f mm \n", firstPos);
printf(" number of det : %d = %d x %d (side x col) \n", numDet, rowDet, colDet);
printf(" detector facing : %s\n", detFaceOut ? "Out" : "In");
printf(" energy resol.: %f MeV\n", eSigma);
printf(" pos-Z resol.: %f mm \n", zSigma);
}
};
struct Auxillary{
//========== recoil
double detPos; //
double outerRadius;
double innerRadius;
bool isCoincident;
double detPos1 = 0; // virtual recoil
double detPos2 = 0; // virtual recoil
//========== enum
double elumPos1 = 0;
double elumPos2 = 0;
void Print() const {
printf("------------------------------- Auxillary\n");
printf(" Recoil detector pos: %8.2f mm, radius: %6.2f - %6.2f mm \n", detPos, innerRadius, outerRadius);
if( elumPos1 != 0 || elumPos2 != 0 || detPos1 != 0 || detPos2 != 0){
printf("=================================== Virtual Detectors\n");
if( elumPos1 != 0 ) printf(" Elum 1 pos.: %f mm \n", elumPos1);
if( elumPos2 != 0 ) printf(" Elum 2 pos.: %f mm \n", elumPos2);
if( detPos1 != 0 ) printf(" Recoil 1 pos.: %f mm \n", detPos1);
if( detPos2 != 0 ) printf(" Recoil 2 pos.: %f mm \n", detPos2);
printf("=====================================================\n");
}
}
};
class DetGeo {
public:
DetGeo(){};
DetGeo(TString detGeoTxt){ LoadDetectorGeo(detGeoTxt, false);}
DetGeo(TMacro * macro){ LoadDetectorGeo(macro, false);}
~DetGeo(){};
double Bfield; /// T
int BfieldSign ; /// sign of B-field
double bore; /// bore , mm
unsigned short numGeo;
double zMin, zMax; /// total range span of all arrays
bool LoadDetectorGeo(TString fileName, bool verbose = true);
bool LoadDetectorGeo(TMacro * macro, bool verbose = true);
//=================== array
std::vector<Array> array;
std::vector<Auxillary> aux;
void Print( int printArray = 0) ; // 0 = no print, -1 = print all, 1 = print only enabled
short GetArrayID(int id){
int detCount = 0;
for( int i = 0; i < numGeo; i ++ ){
detCount += array[i].numDet;
if( id < detCount ) return i;
}
return -1;
}
private:
};
inline bool DetGeo::LoadDetectorGeo(TString fileName, bool verbose){
TMacro * haha = new TMacro();
if( haha->ReadFile(fileName) > 0 ) {
if( LoadDetectorGeo(haha, verbose) ){
delete haha;
return true;
}else{
delete haha;
return false;
}
}else{
delete haha;
return false;
}
}
///Using TMacro to load the detectorGeo frist,
///this indrect method is good for loading detectorGeo from TMacro in root file
inline bool DetGeo::LoadDetectorGeo(TMacro * macro, bool verbose){
if( macro == NULL ) return false;
TList * haha = macro->GetListOfLines();
int numLine = (haha)->GetSize();
// for( int i = 0; i < 2 ; i++) array[i].pos.clear();
int detFlag = 0;
int detLine = 0;
for( int i = 0 ; i < numLine; i++){
std::string line = macro->GetListOfLines()->At(i)->GetName();
if( AnalysisLib::isEmptyOrSpaces(line) ) continue;
std::vector<std::string> str = AnalysisLib::SplitStr(line, " ");
// printf("%3d | %s\n", i, str[0].c_str());
if( str[0].find("#//") != std::string::npos ) continue;
if( str[0].find("####") != std::string::npos ) break;
if( str[0].find("#===") != std::string::npos ) {
detFlag ++;
array.push_back(Array());
aux.push_back(Auxillary());
detLine = 0;
continue;;
}
if( detFlag == 0 ){
if ( detLine == 0 ) {
Bfield = atof(str[0].c_str());
BfieldSign = Bfield > 0 ? 1: -1;
}
if ( detLine == 1 ) bore = atof(str[0].c_str());
}
if( detFlag > 0){
unsigned short ID = detFlag - 1;
if ( detLine == 0 ) array[ID].enable = str[0] == "true" ? true : false;
if ( detLine == 1 ) aux[ID].detPos = atof(str[0].c_str());
if ( detLine == 2 ) aux[ID].innerRadius = atof(str[0].c_str());
if ( detLine == 3 ) aux[ID].outerRadius = atof(str[0].c_str());
if ( detLine == 4 ) aux[ID].isCoincident = str[0] == "true" ? true : false;
if ( detLine == 5 ) aux[ID].detPos1 = atof(str[0].c_str());
if ( detLine == 6 ) aux[ID].detPos2 = atof(str[0].c_str());
if ( detLine == 7 ) aux[ID].elumPos1 = atof(str[0].c_str());
if ( detLine == 8 ) aux[ID].elumPos2 = atof(str[0].c_str());
if ( detLine == 9 ) array[ID].detPerpDist = atof(str[0].c_str());
if ( detLine == 10 ) array[ID].detWidth = atof(str[0].c_str());
if ( detLine == 11 ) array[ID].detLength = atof(str[0].c_str());
if ( detLine == 12 ) array[ID].blocker = atof(str[0].c_str());
if ( detLine == 13 ) array[ID].firstPos = atof(str[0].c_str());
if ( detLine == 14 ) array[ID].eSigma = atof(str[0].c_str());
if ( detLine == 15 ) array[ID].zSigma = atof(str[0].c_str());
if ( detLine == 16 ) array[ID].detFaceOut = str[0] == "Out" ? true : false;
if ( detLine == 17 ) array[ID].rowDet = atoi(str[0].c_str());
if ( detLine >= 18 ) array[ID].pos.push_back(atof(str[0].c_str()));
}
detLine ++;
}
zMin = 99999;
zMax = -99999;
numGeo = 0;
for( int i = 0; i < detFlag; i ++ ){
array[i].DeduceAbsolutePos();
if (array[i].enable ) {
numGeo ++;
double zmax = TMath::Max(array[i].zMin, array[i].zMax);
double zmin = TMath::Min(array[i].zMin, array[i].zMax);
if( zmax > zMax ) zMax = zmax;
if( zmin < zMin ) zMin = zmin;
}
}
if( verbose ) Print(false);
return true;
}
inline void DetGeo::Print(int printArray){
printf("#####################################################\n");
printf(" B-field : %8.2f T, %s\n", Bfield, Bfield > 0 ? "out of plan" : "into plan");
printf(" Bore : %8.2f mm\n", bore);
printf(" No. of det. Set. : %zu \n", array.size());
printf(" z-Min : %8.2f mm\n", zMin);
printf(" z-Max : %8.2f mm\n", zMax);
if( printArray != 0 ) {
for( size_t i = 0; i < array.size() ; i++){
if( printArray > 0 && !array[i].enable ) continue;
printf("================================= %zu-th Detector Info (%s)\n", i, array[i].enable ? "enabled" : "disabled");
array[i].Print();
aux[i].Print();
}
}
printf("#####################################################\n");
}
#endif

345
Armory/ClassReactionConfig.h
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#ifndef ClassReactionConfig_H
#define ClassReactionConfig_H
#include <stdio.h> /// for FILE
#include <cstdlib>
#include <string>
#include <vector>
#include <unistd.h>
#include "TMath.h"
#include "TString.h"
#include "TMacro.h"
#include "AnalysisLib.h"
#include "../Cleopatra/ClassIsotope.h"
struct Recoil {
Isotope light;
unsigned short lightA, lightZ;
unsigned short heavyA, heavyZ;
std::string lightStoppingPowerFile = ""; ///stopping_power_for_light_recoil
std::string heavyStoppingPowerFile = ""; ///stopping_power_for_heavy_recoil
bool isDecay = false; ///isDacay
unsigned short decayA = 0; ///decayNucleus_A
unsigned short decayZ = 0; ///decayNucleus_Z
void Print() const {
printf(" light : A = %3d, Z = %2d \n", lightA, lightZ);
printf(" heavy : A = %3d, Z = %2d \n", heavyA, heavyZ);
printf(" light stopping file : %s \n", lightStoppingPowerFile.c_str());
printf(" heavy stopping file : %s \n", heavyStoppingPowerFile.c_str());
printf(" is simulate decay : %s \n", isDecay ? "Yes" : "No");
if( isDecay ){
printf(" heavy decay : A = %d, Z = %d \n", decayA, decayZ);
}
}
};
struct EnergyLevel{
float Ex, xsec, SF, sigma;
EnergyLevel(float Ex, float xsec, float SF, float sigma) {
this->Ex = Ex;
this->xsec = xsec;
this->SF = SF;
this->sigma = sigma;
}
void Print(std::string str) const {
printf("%11.3f %8.1f %5.1f %5.3f%s", Ex, xsec, SF, sigma, str.c_str() );
}
};
struct ExcitedEnergies {
std::vector<EnergyLevel> ExList;
void Clear(){
ExList.clear();
}
void Add(float Ex, float xsec, float SF, float sigma){
ExList.push_back( EnergyLevel(Ex, xsec, SF, sigma));
}
void Print() const {
printf("Energy[MeV] Rel.Xsec SF sigma\n");
for( size_t i = 0; i < ExList.size(); i++){
ExList[i].Print("\n");
}
}
};
class ReactionConfig {
public:
ReactionConfig(){}
ReactionConfig(TString configTxt){ LoadReactionConfig(configTxt);}
ReactionConfig(TMacro * macro){ LoadReactionConfig(macro);}
~ReactionConfig(){}
Isotope beam;
unsigned short beamA, beamZ;
float beamEx; ///excitation_energy_of_A[MeV]
float beamEnergy; ///MeV/u
float beamEnergySigma; ///beam-energy_sigma_in_MeV/u
float beamTheta; ///beam-angle_in_mrad
float beamThetaSigma; ///beam-emittance_in_mrad
float beamX; ///x_offset_of_Beam_in_mm
float beamY; ///y_offset_of_Beam_in_mm
Isotope target;
unsigned short targetA, targetZ;
bool isTargetScattering; ///isTargetScattering
float targetDensity; ///target_density_in_g/cm3
float targetThickness; ///targetThickness_in_cm
std::string beamStoppingPowerFile; ///stopping_power_for_beam
std::vector<Recoil> recoil;
std::vector<ExcitedEnergies> exList;
int numEvents; ///number_of_Event_being_generated
bool isRedo; ///isReDo
void SetReactionSimple(int beamA, int beamZ,
int targetA, int targetZ,
int recoilA, int recoilZ,
float beamEnergy_AMeV);
bool LoadReactionConfig(TString fileName);
bool LoadReactionConfig(TMacro * macro);
void Print(int ID = -1, bool withEx = true) const;
private:
};
inline void ReactionConfig::SetReactionSimple(int beamA, int beamZ,
int targetA, int targetZ,
int recoilA, int recoilZ,
float beamEnergy_AMeV){
this->beamA = beamA;
this->beamZ = beamZ;
this->targetA = targetA;
this->targetZ = targetZ;
this->recoil.push_back(Recoil());
this->recoil.back().lightA = recoilA;
this->recoil.back().lightZ = recoilZ;
recoil.back().heavyA = this->beamA + this->targetA - recoil.back().lightA;
recoil.back().heavyZ = this->beamZ + this->targetZ - recoil.back().lightZ;
beamEnergy = beamEnergy_AMeV;
beamEnergySigma = 0;
beamTheta = 0;
beamThetaSigma = 0;
beamX = 0;
beamY = 0;
}
inline bool ReactionConfig::LoadReactionConfig(TString fileName){
TMacro * haha = new TMacro();
if( haha->ReadFile(fileName) > 0 ) {
if( LoadReactionConfig(haha) ){
delete haha;
return true;
}else{
delete haha;
return false;
}
}else{
delete haha;
return false;
}
}
inline bool ReactionConfig::LoadReactionConfig(TMacro * macro){
if( macro == NULL ) return false;
int recoilFlag = 0;
int recoilLine = 0;
int numLine = macro->GetListOfLines()->GetSize();
for( int i = 0; i < numLine; i ++){
std::string line = macro->GetListOfLines()->At(i)->GetName();
if( AnalysisLib::isEmptyOrSpaces(line) ) continue;
std::vector<std::string> str =AnalysisLib::SplitStr(line, " ");
// printf("%d |%s|%d|%d\n", i, str[0].c_str(), recoilFlag, recoilLine);
if( str[0].find("####") != std::string::npos ) break;
if( str[0].find("#---") != std::string::npos ) continue;
if( str[0].find("#===") != std::string::npos ) {
recoilFlag ++;
recoilLine = 0;
recoil.push_back(Recoil());
exList.push_back(ExcitedEnergies());
continue;
}
if( recoilFlag == 0 ){
if( recoilLine == 0 ) {
beam.SetIsoByName(str[0]);
beamA = beam.A;
beamZ = beam.Z;
}
if( recoilLine == 1 ) beamEx = atoi(str[0].c_str());
if( recoilLine == 2 ) beamEnergy = atof(str[0].c_str());
if( recoilLine == 3 ) beamEnergySigma = atof(str[0].c_str());
if( recoilLine == 4 ) beamTheta = atof(str[0].c_str());
if( recoilLine == 5 ) beamThetaSigma = atof(str[0].c_str());
if( recoilLine == 6 ) beamX = atof(str[0].c_str());
if( recoilLine == 7 ) beamY = atof(str[0].c_str());
if( recoilLine == 8 ) {
target.SetIsoByName(str[0]);
targetA = target.A;
targetZ = target.Z;
}
if( recoilLine == 9 ) isTargetScattering = str[0].compare("true") == 0 ? true: false;
if( recoilLine == 10 ) targetDensity = atof(str[0].c_str());
if( recoilLine == 11 ) targetThickness = atof(str[0].c_str());
if( recoilLine == 12 ) beamStoppingPowerFile = str[0];
if( recoilLine == 13 ) numEvents = atoi(str[0].c_str());
if( recoilLine == 14 ) isRedo = str[0].compare("true" ) == 0 ? true : false;
}
if( recoilFlag > 0 ){
unsigned ID = recoilFlag - 1;
if( recoilLine == 0 ) {
recoil[ID].light.SetIsoByName(str[0]);
recoil[ID].lightA = recoil[ID].light.A;
recoil[ID].lightZ = recoil[ID].light.Z;
}
if( recoilLine == 1 ) recoil[ID].lightStoppingPowerFile = str[0];
if( recoilLine == 2 ) recoil[ID].heavyStoppingPowerFile = str[0];
if( recoilLine == 3 ) recoil[ID].isDecay = str[0].compare("true") == 0 ? true : false;
if( recoilLine == 4 ) recoil[ID].decayA = atoi(str[0].c_str());
if( recoilLine == 5 ) recoil[ID].decayZ = atoi(str[0].c_str());
if( recoilLine > 5 && str.size() == 4) {
if( str[0].find('#') != std::string::npos) continue;
if( str[0] == "IAEA"){
recoil[ID].heavyA = beamA + targetA - recoil[ID].lightA;
recoil[ID].heavyZ = beamZ + targetZ - recoil[ID].lightZ;
printf(">>>>>>>>>>>>> Retrieving Ex data from IAEA website....\n");
std::string scriptPath = "../WebSimHelper/getEx.py " + std::to_string(recoil[ID].heavyA) + " " + std::to_string(recoil[ID].heavyZ) + " " + str[2];
std::vector<std::string> output = AnalysisLib::executePythonScript(scriptPath);
if( output.size() > 1 ){
for( size_t dudu = 1 ; dudu < output.size(); dudu ++ ){
printf("%s", output[dudu].c_str());
std::vector<std::string> dondon = AnalysisLib::SplitStr(output[dudu], " ");
if( str[1].find("all") == std::string::npos){ // only comfirm states
if(dondon[2].find(')') != std::string::npos ) continue;
if(dondon[2].find('N') != std::string::npos ) continue;
// printf("kdlsakdas ---- %s\n", str[1].c_str());
if(str[1] == "+" && dondon[2].find('+') != std::string::npos ){
// printf(" only comfim + states\n");
exList[ID].Add( atoi(dondon[1].c_str()), 1.0, 1.0, atoi(str[3].c_str()));
}
if(str[1] == "-" && dondon[2].find('-') != std::string::npos ){
// printf(" only comfim - states\n");
exList[ID].Add( atoi(dondon[1].c_str()), 1.0, 1.0, atoi(str[3].c_str()));
}
if( str[1] == "known" ){
// printf(" All comfim state\n");
exList[ID].Add( atoi(dondon[1].c_str()), 1.0, 1.0, atoi(str[3].c_str()));
}
}else{
if(str[1] == "+all" && dondon[2].find('+') != std::string::npos ){
// printf(" All state : %s\n", str[1].c_str());
exList[ID].Add( atoi(dondon[1].c_str()), 1.0, 1.0, atoi(str[3].c_str()));
}
if(str[1] == "-all" && dondon[2].find('-') != std::string::npos ){
// printf(" All state : %s\n", str[1].c_str());
exList[ID].Add( atoi(dondon[1].c_str()), 1.0, 1.0, atoi(str[3].c_str()));
}
if( str[1] == "all" ){
// printf(" All state \n");
exList[ID].Add( atoi(dondon[1].c_str()), 1.0, 1.0, atoi(str[3].c_str()));
}
}
}
}else{
printf(" No states found from IAEA database, assume ground state.");
exList[ID].Add( 0, 1.0, 1.0, 0.01);
}
}else{
exList[ID].Add( atoi(str[0].c_str()), atoi(str[1].c_str()), atoi(str[2].c_str()), atoi(str[3].c_str()));
}
}
}
recoilLine ++;
}
for( size_t i = 0; i < recoil.size(); i++){
recoil[i].heavyA = beamA + targetA - recoil[i].lightA;
recoil[i].heavyZ = beamZ + targetZ - recoil[i].lightZ;
}
return true;
}
inline void ReactionConfig::Print(int ID, bool withEx) const{
printf("#####################################################\n");
printf("number of Simulation Events : %d \n", numEvents);
printf(" is Redo until hit array : %s \n", isRedo ? "Yes" : "No");
printf("================================= Beam\n");
printf(" beam : A = %3d, Z = %2d, Ex = %.2f MeV\n", beamA, beamZ, beamEx);
printf(" beam Energy : %.2f +- %.2f MeV/u, dE/E = %5.2f %%\n", beamEnergy, beamEnergySigma, beamEnergySigma/beamEnergy);
printf(" Angle : %.2f +- %.2f mrad\n", beamTheta, beamThetaSigma);
printf(" offset : (x,y) = (%.2f, %.2f) mmm \n", beamX, beamY);
printf("================================= Target\n");
printf(" target : A = %3d, Z = %2d \n", targetA, targetZ);
printf(" enable scattering : %s \n", isTargetScattering ? "Yes" : "No");
if(isTargetScattering){
printf(" target density : %.f g/cm3\n", targetDensity);
printf(" thickness : %.f cm\n", targetThickness);
printf(" beam stopping file : %s \n", beamStoppingPowerFile.c_str());
}
printf("================================= Number of recoil reactions : %zu\n", recoil.size());
for( int i = 0; i < (int)recoil.size(); i ++ ){
if( ID == i || ID < 0 ){
printf("------------------------------------------ Recoil-%d\n", i);
recoil[i].Print();
if( withEx ) exList[i].Print();
}
}
printf("#####################################################\n");
}
#endif

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Armory/ClassReactionParas_tobeKill.h
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#ifndef ReactionParameters_H
#define ReactionParameters_H
#include "ClassDetGeo.h"
class ReactionParas{
public:
ReactionParas();
double Et; // total energy in CM frame
double beta; // Lorentz beta from Lab to CM
double gamma; // Lorentz gamma from Lab to CM
double alpha; // E-Z slope / beta
double G; //The G-coefficient....
double massB; // heavy mass
double q; // charge of light particle
double mass; //light mass
bool hasReactionPara;
double detPrepDist;
void LoadReactionParas(bool verbose = false);
std::pair<double, double> CalExTheta(double e, double z)
};
ReactionParas::ReactionParas(){
}
//~========================================= reaction parameters
inline void ReactionParas::LoadReactionParas(bool verbose = false){
//check is the transfer.root is using the latest reactionConfig.txt
//sicne reaction.dat is generated as a by-product of transfer.root
//TFile * transfer = new TFile("transfer.root");
//TString aaa1 = "";
//TString aaa2 = "";
//if( transfer->IsOpen() ){
// TMacro * reactionConfig = (TMacro *) transfer->FindObjectAny("reactionConfig");
// TMacro presentReactionConfig ("reactionConfig.txt");
// aaa1 = ((TMD5*) reactionConfig->Checksum())->AsString();
// aaa2 = ((TMD5*) presentReactionConfig.Checksum())->AsString();
//}
//printf("%s\n", aaa1.Data());
//printf("%s\n", aaa2.Data());
//if( aaa1 != aaa2 ) {
// printf("########################## recalculate transfer.root \n");
// system("../Cleopatra/Transfer");
// printf("########################## transfer.root updated\n");
//}
std::string fileName;
detPrepDist = Array::detPerpDist;
printf(" loading reaction parameters");
std::ifstream file;
file.open(fileName.c_str());
hasReactionPara = false;
if( file.is_open() ){
std::string x;
int i = 0;
while( file >> x ){
if( x.substr(0,2) == "//" ) continue;
if( i == 0 ) mass = atof(x.c_str());
if( i == 1 ) q = atof(x.c_str());
if( i == 2 ) beta = atof(x.c_str());
if( i == 3 ) Et = atof(x.c_str());
if( i == 4 ) massB = atof(x.c_str());
i = i + 1;
}
printf("........ done.\n");
hasReactionPara = true;
alpha = 299.792458 * abs(detGeo.Bfield) * q / TMath::TwoPi()/1000.; //MeV/mm
gamma = 1./TMath::Sqrt(1-beta * beta);
G = alpha * gamma * beta * detPrepDist ;
if( verbose ){
printf("\tmass-b : %f MeV/c2 \n", mass);
printf("\tcharge-b : %f \n", q);
printf("\tE-total : %f MeV \n", Et);
printf("\tmass-B : %f MeV/c2 \n", massB);
printf("\tbeta : %f \n", beta);
printf("\tB-field : %f T \n", detGeo.Bfield);
printf("\tslope : %f MeV/mm \n", alpha * beta);
printf("\tdet radius: %f mm \n", detPrepDist);
printf("\tG-coeff : %f MeV \n", G);
printf("=====================================================\n");
}
}else{
printf("........ fail.\n");
}
file.close();
}
inline std::pair<double, double> ReactionParas::CalExTheta(double e, double z){
ReactionParas * reactParas = nullptr;
if( detGeo.array1.zMin <= z && z <= detGeo.array1.zMax ){
reactParas = &reactParas1;
if( !hasReactionPara) return {TMath::QuietNaN(), TMath::QuietNaN()};
}
if( detGeo.array2.zMin <= z && z <= detGeo.array2.zMax ){
reactParas = &reactParas2;
if( !hasReactionPara) return {TMath::QuietNaN(), TMath::QuietNaN()};
}
double Ex = TMath::QuietNaN();
double thetaCM = TMath::QuietNaN();
double y = e + mass; // to give the KE + mass of proton;
double Z = alpha * gamma * beta * z;
double H = TMath::Sqrt(TMath::Power(gamma * beta,2) * (y*y - mass * mass) ) ;
if( TMath::Abs(Z) < H ) {
///using Newton's method to solve 0 == H * sin(phi) - G * tan(phi) - Z = f(phi)
double tolerrence = 0.001;
double phi = 0; ///initial phi = 0 -> ensure the solution has f'(phi) > 0
double nPhi = 0; /// new phi
int iter = 0;
do{
phi = nPhi;
nPhi = phi - (H * TMath::Sin(phi) - G * TMath::Tan(phi) - Z) / (H * TMath::Cos(phi) - G /TMath::Power( TMath::Cos(phi), 2));
iter ++;
if( iter > 10 || TMath::Abs(nPhi) > TMath::PiOver2()) break;
}while( TMath::Abs(phi - nPhi ) > tolerrence);
phi = nPhi;
/// check f'(phi) > 0
double Df = H * TMath::Cos(phi) - G / TMath::Power( TMath::Cos(phi),2);
if( Df > 0 && TMath::Abs(phi) < TMath::PiOver2() ){
double K = H * TMath::Sin(phi);
double x = TMath::ACos( mass / ( y * gamma - K));
double momt = mass * TMath::Tan(x); /// momentum of particel b or B in CM frame
double EB = TMath::Sqrt(mass * mass + Et * Et - 2 * Et * TMath::Sqrt(momt*momt + mass * mass));
Ex = EB - massB;
double hahaha1 = gamma * TMath::Sqrt(mass * mass + momt * momt) - y;
double hahaha2 = gamma * beta * momt;
thetaCM = TMath::ACos(hahaha1/hahaha2) * TMath::RadToDeg();
}
}
return std::make_pair(Ex, thetaCM);
}
#endif

1
Armory/EventBuilder
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@ -1 +0,0 @@
/home/ryan/SOLARIS_DAQ/Aux/EventBuilder

90
Armory/Process_BasicConfig
View File

@ -1,90 +0,0 @@
#!/bin/bash -l
##############################################
#
# This script define color and dataPath
#
##############################################
if [ ! -z $RED ]; then
echo "Process_BasicConfig already loaded."
return
fi
RED='\033[1;31m'
YELLOW='\033[1;33m'
ORANGE='\033[0;33m'
GREEN='\033[1;32m'
BLUE='\033[0;34m'
CYAN='\033[0;36m'
NC='\033[0m' #no color
LRED='\033[1;91m'
echo -e "${RED}##################### Loading Process_BasicConfig.sh ${NC}"
############## need to distingish mac and daq
Arch="$(uname -s)"
PCName="$(hostname)"
PCID=-1 #if PCID == 1 (DAQ), 2 (MAC), 3 (test station), -1(OTHER)
#------ Set up data folder, check disk space
echo -e "${YELLOW}##################### Check computer name and arch. ${NC}"
echo "PC name : ${PCName}"
echo "Archetech: ${Arch}"
rawDataPath=${SOLARISANADIR}/data_raw/
rootDataPath=${SOLARISANADIR}/root_data/
echo "Raw Data Path : "${rawDataPath}
echo "Root Data Path : "${rootDataPath}
if [ ${Arch} == "Linux" ] && [ ${PCName} == "solaris-daq" ]; then
PCID=1
# pathsSetting=${HOME}/SOLARIS_DAQ/programSettings.txt
# if [ -e ${pathsSetting} ]; then
# #echo "Found DAQ programSettings.txt for paths settings"
# analysisPath=$(cat ${pathsSetting} | head -n 2 | tail -n 1)
# if [ ! "${analysisPath}" = "$SOLARISANADIR" ]; then
# echo "The analysisPath from ${analysisPath} is different from present folder $SOLARISANADIR. Abort."
# exit
# fi
# rawDataPathParent=$(cat ${pathsSetting} | head -n 3 | tail -n 1)
# rootDataPathParent=$(cat ${pathsSetting} | head -n 4 | tail -n 1)
# databaseIP=$(cat ${pathsSetting} | head -n 6 | tail -n 1)
# databaseName=$(cat ${pathsSetting} | head -n 7 | tail -n 1)
# #echo ${rawDataPathParent}
# #echo ${rootDataPathParent}
# #echo ${databaseIP}
# #echo ${databaseName}
# else
# echo "${RED} Cannot found DAQ programSettings.txt for path settings ${NC}"
# echo "Seek Ryan for help"
# exit
# fi
fi
if [ ${Arch} == "Darwin" ] && [ ${PCName} == "SOLARISs-Mac-Studio.local" ]; then
PCID=2
# rawDataPathParent=${HOME}/experimentalData/
# rootDataPathParent=${HOME}/experimentalData/
fi
if [ ${Arch} == "Linux" ] && [ ${PCName} == "solarisdaq" ]; then
PCID=3
# rawDataPathParent=${SOLARISANADIR}/data_raw/
# rootDataPathParent=${SOLARISANADIR}/root_data/
fi

654
Cleopatra/Check_Simulation.C Normal file
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@ -0,0 +1,654 @@
#include <TFile.h>
#include <TTree.h>
#include <TCanvas.h>
#include <TROOT.h>
#include <TObjArray.h>
#include <TStyle.h>
#include <TH2F.h>
#include <TH1F.h>
#include <TF1.h>
#include <TArc.h>
#include <TMath.h>
#include <TLine.h>
#include <TSpectrum.h>
#include <TGraph.h>
#include <TLegend.h>
#include <TLatex.h>
#include <TMacro.h>
#include <TObjArray.h>
#include <fstream>
#include <TCutG.h>
#include "../armory/AnalysisLib.h"
#include "../Cleopatra/Isotope.h"
double * FindRange(TString branch, TString gate, TTree * tree, double output[2]);
double ExtractNumber(int index, TMacro * macro);
TString ExtractString(int index, TMacro * macro);
vector<TString> StringToVector(TString str);
vector<int> intConvertor(vector<TString> arr);
vector<double> doubleConvertor(vector<TString> arr);
enum plotID { pEZ, /// 0
pRecoilXY, /// 1
pRecoilXY1, /// 2
pRecoilXY2, /// 3
pRecoilRZ, /// 4
pRecoilRTR, /// 5
pTDiffZ, /// 6
pThetaCM, /// 7
pThetaCM_Z, /// 8
pExCal, /// 9
pRecoilRThetaCM, /// 10
pArrayXY, /// 11
pInfo, /// 12
pHitID, /// 13
pElum1XY, /// 14
pEElum1R, /// 15
pElum1RThetaCM, /// 16
pEmpty }; /// 17
plotID StringToPlotID(TString str);
void Check_Simulation(TString filename = "transfer1.root",
TString configFile = "../working/Check_Simulation_Config.txt",
Int_t padSize = 500,
bool outputCanvas = false){
printf("=========================== Check_Simulation.C\n");
TMacro * config = new TMacro(configFile);
int numLine = config->GetListOfLines()->GetSize();
int startLineNum = 0;
for( int i = 0; i < numLine ; i++){
TString haha = config->GetListOfLines()->At(i)->GetName();
haha.Remove(4);
if( haha != "////" ) {
startLineNum = i;
break;
}
}
TString gate = ExtractString(startLineNum+1, config);
double elumRange = ExtractNumber(startLineNum+2, config);
vector<double> thetaCMRange = doubleConvertor( StringToVector( ExtractString(startLineNum+3,config) ));
bool shownKELines = (ExtractString(startLineNum+4, config).Remove(4) == "true" ? true : false);
bool isOverRideEx = (ExtractString(startLineNum+5, config).Remove(4) == "true" ? true : false);
vector<double> oExRange = doubleConvertor( StringToVector ( ExtractString(startLineNum+6, config )));
printf("%s \n", gate.Data());
///==== config Canvas
vector<TString> plotConfig = StringToVector( ExtractString(startLineNum, config));
vector<plotID> canvas;
int colCount = 0;
int colCount_new = 0;
int rowCount = 1;
for( int i = 0; i < (int) plotConfig.size(); i++){
if( plotConfig[i] == "break" ) {
rowCount ++;
if( colCount_new > colCount ) colCount = colCount_new;
colCount_new = 0;
continue;
}
canvas.push_back( StringToPlotID(plotConfig[i]));
colCount_new ++;
}
if( colCount == 0 ) colCount = colCount_new;
///printf("plot row: %d, col: %d \n", rowCount, colCount);
vector<int> Div = {colCount, rowCount};
TFile * file = new TFile(filename, "read");
TTree * tree = (TTree*) file->Get("tree");
TObjArray * fxList = (TObjArray *) file->FindObjectAny("fxList");
TObjArray * txList = (TObjArray *) file->FindObjectAny("txList");
//================== reactionConfig
TMacro * reactionConfigTxt = (TMacro *) file->FindObjectAny("reactionConfig");
TString Reaction=reactionConfigTxt->GetName();
AnalysisLib::ReactionConfig reactionConfig = AnalysisLib::LoadReactionConfig(reactionConfigTxt);
int nEvent = reactionConfig.numEvents;
printf("number of events generated : %d \n", nEvent);
double xBeam = reactionConfig.beamX;
double yBeam = reactionConfig.beamY;
printf(" beam position : (%5.2f, %5.2f) mm \n", xBeam, yBeam);
gStyle->SetOptStat("");
gStyle->SetStatY(0.9);
gStyle->SetStatX(0.9);
gStyle->SetStatW(0.4);
gStyle->SetStatH(0.2);
gStyle->SetLabelSize(0.05, "XY");
gStyle->SetTitleFontSize(0.1);
double eRange[2] = {0, 10};
double zRange[3] = {400, -1000, 1000}; /// zRange[0] = nBin
double recoilERange[2];
vector<double> exList;
double ExRange[2];
//================================== detetcor Geometry
printf("=================================\n");
printf(" loading detector Geometry.\n");
TMacro * detGeoTxt = (TMacro *) file->FindObjectAny("detGeo");
AnalysisLib::DetGeo detGeo = AnalysisLib::LoadDetectorGeo(detGeoTxt);
AnalysisLib::Array array;
if( detGeo.use2ndArray){
array = detGeo.array2;
}else{
array = detGeo.array1;
}
double field = detGeo.Bfield;
TString fdmsg = field > 0 ? "out of plan" : "into plan";
TString msg2;
msg2.Form("field = %.2f T, %s", field, fdmsg.Data());
double prepDist = array.detPerpDist;
double length = array.detLength;
double posRecoil = detGeo.recoilPos;
double rhoRecoilIn = detGeo.recoilInnerRadius;
double rhoRecoilOut = detGeo.recoilOuterRadius;
double posRecoil1 = detGeo.recoilPos1;
double posRecoil2 = detGeo.recoilPos2;
vector<double> pos = array.detPos;
float firstPos = array.firstPos;
int rDet = array.nDet;
int cDet = array.mDet;
double elum1 = detGeo.elumPos1;
printf("number of row-Det : %d \n", rDet);
printf("number of col-Det : %d \n", cDet);
for(int i = 0; i < rDet ; i++){
if( firstPos > 0 ){
printf("%d, %10.2f mm - %10.2f mm \n", i, pos[i], pos[i] + length);
}else{
printf("%d, %10.2f mm - %10.2f mm \n", i, pos[i] - length , pos[i]);
}
}
printf("=================================\n");
int numDet = rDet * cDet;
zRange[1] = array.zMin - 50;
zRange[2] = array.zMax + 50;
printf(" zRange : %f - %f \n", zRange[1], zRange[2]);
printf("=================================\n");
//========================================= Ex List;
printf(" loading Ex list\n");
TMacro * exListMacro = (TMacro *) file->FindObjectAny("ExList");
int numEx = exListMacro->GetListOfLines()->GetSize() - 1 ;
for(int i = 1; i <= numEx ; i++){
string temp = exListMacro->GetListOfLines()->At(i)->GetName();
if( temp[0] == '#' ) break;
if( temp[0] == '/' ) continue;
vector<string> tempStr = AnalysisLib::SplitStr(temp, " ");
printf("%d | %s \n", i, tempStr[0].c_str());
exList.push_back(atof(tempStr[0].c_str()));
}
double exSpan = exList.back() - exList[0];
const int nExID = exList.size();
printf("========= number of excited states : %d \n", nExID);
ExRange[0] = exList[0] - exSpan * 0.2;
ExRange[1] = exList.back() + exSpan * 0.2;
if( isOverRideEx ) {
ExRange[0] = oExRange[0];
ExRange[1] = oExRange[1];
}
printf("=================================\n");
//========================================= reaction parameters
printf(" loading reaction parameters \n");
TMacro * reactionData = (TMacro *) file->FindObjectAny("reactionData");
double mass = ExtractNumber(0, reactionData);
double q = ExtractNumber(1, reactionData);
double beta = ExtractNumber(2, reactionData);
double Et = ExtractNumber(3, reactionData);
double massB = ExtractNumber(4, reactionData);
double alpha = ExtractNumber(5, reactionData);
double gamm = 1./TMath::Sqrt(1-beta*beta);
double slope = alpha * beta;
printf("\tmass-b : %f MeV/c2 \n", mass);
printf("\tcharge-b : %f \n", q);
printf("\tE-total : %f MeV \n", Et);
printf("\tmass-B : %f MeV/c2 \n", massB);
printf("\tbeta : %f \n", beta);
printf("\tslope : %f MeV/mm \n", slope);
printf("=================================\n");
//=================================== calculate Ranges
//eRange by zRange and exList
double QQ = (Et*Et + mass*mass - (massB-exList[0])*(massB-exList[0]))/2/Et;
double intercept = QQ/gamm - mass;
eRange[1] = intercept + zRange[2] * slope;
///printf("intercept of 0 MeV : %f MeV \n", intercept);
///printf("eRange 0 MeV : %f MeV \n", eRange[1]);
//thetaCMRange
///double momentum = sqrt(( Et*Et - pow(mass + massB - exList[0],2)) * ( Et*Et - pow(mass - massB + exList[0],2)))/2/Et;
///double thetaMax = acos( (beta * QQ- alpha / gamm * zRange[2])/momentum) * TMath::RadToDeg();
///thetaCMRange[1] = (int) TMath::Ceil(thetaMax/10.)*10;
///printf(" momentum : %f \n", momentum);
///printf(" thetaCM Max : %f \n", thetaMax);
///printf(" thetaCM Range : %d \n", thetaCMRange[1]);
//===================================================
printf("============================== Gate\n");
printf("gate : %s\n", gate.Data());
printf("====================================\n");
Int_t size[2] = {padSize,padSize}; ///x,y, single Canvas size
TCanvas * cCheck = new TCanvas("cCheck", "Check For Simulation", 0, 0, size[0]*Div[0], size[1]*Div[1]);
if(cCheck->GetShowEditor() )cCheck->ToggleEditor();
if(cCheck->GetShowToolBar() )cCheck->ToggleToolBar();
cCheck->Divide(Div[0],Div[1]);
for( int i = 1; i <= Div[0]*Div[1] ; i++){
cCheck->cd(i);
cCheck->cd(i)->SetGrid();
if( canvas[i-1] == pThetaCM ) {
cCheck->cd(i)->SetGrid(0,0);
cCheck->cd(i)->SetLogy();
}
if( canvas[i-1] == pHitID ){
cCheck->cd(i)->SetLogy();
}
plotID pID = canvas[i-1];
///########################################
if( pID == pEZ){
TH2F * hez = new TH2F("hez", Form("e-z [gated] @ %5.0f mm; z [mm]; e [MeV]", firstPos), zRange[0], zRange[1], zRange[2], 400, eRange[0], eRange[1]);
tree->Draw("e:z>>hez", gate, "colz");
if( shownKELines){
for( int i = 0; i < nExID ; i++){
fxList->At(i)->Draw("same");
}
}
}
if( pID == pRecoilXY ){
TH2F * hRecoilXY = new TH2F("hRecoilXY", Form("RecoilXY [gated] @ %4.0f mm; X [mm]; Y [mm]", posRecoil ), 400, -rhoRecoilOut, rhoRecoilOut, 400,-rhoRecoilOut, rhoRecoilOut);
tree->Draw("yRecoil:xRecoil>>hRecoilXY", gate, "colz");
TArc * detArc1 = new TArc(0,0, rhoRecoilOut);
detArc1->SetLineColor(kBlue-8);
detArc1->SetFillStyle(0);
detArc1->Draw("same");
TArc * detArc2 = new TArc(0,0, rhoRecoilIn);
detArc2->SetLineColor(kBlue-8);
detArc2->SetFillStyle(0);
detArc2->Draw("same");
if( xBeam != 0. || yBeam != 0. ){
TArc * arc = new TArc(xBeam, yBeam, 1);
arc->SetLineColor(2);
detArc1->SetFillStyle(0);
arc->Draw("same");
}
}
if( pID == pRecoilXY1 ){
TH2F * hRecoilXY1 = new TH2F("hRecoilXY1", Form("RecoilXY-1 [gated] @ %4.0f mm; X [mm]; Y [mm]", posRecoil1 ), 400, -rhoRecoilOut, rhoRecoilOut, 400,-rhoRecoilOut, rhoRecoilOut);
tree->Draw("yRecoil1:xRecoil1>>hRecoilXY1", gate, "colz");
}
if( pID == pRecoilXY2 ){
TH2F * hRecoilXY2 = new TH2F("hRecoilXY2", Form("RecoilXY-2 [gated] @ %4.0f mm; X [mm]; Y [mm]", posRecoil2 ), 400, -rhoRecoilOut, rhoRecoilOut, 400,-rhoRecoilOut, rhoRecoilOut);
tree->Draw("yRecoil2:xRecoil2>>hRecoilXY2", gate, "colz");
}
if( pID == pRecoilRZ ){
TH2F * hRecoilRZ = new TH2F("hRecoilRZ", "RecoilR - Z [gated]; z [mm]; RecoilR [mm]", zRange[0], zRange[1], zRange[2], 400,0, rhoRecoilOut);
tree->Draw("rhoRecoil:z>>hRecoilRZ", gate, "colz");
}
if( pID == pRecoilRTR ){
FindRange("TB", gate, tree, recoilERange);
TH2F * hRecoilRTR = new TH2F("hRecoilRTR", "RecoilR - recoilE [gated]; recoil Energy [MeV]; RecoilR [mm]", 500, recoilERange[0], recoilERange[1], 500, 0, rhoRecoilOut);
tree->Draw("rhoRecoil:TB>>hRecoilRTR", gate, "colz");
}
if( pID == pTDiffZ ){
double tDiffRange [2];
FindRange("t-tB", gate, tree, tDiffRange);
TH2F * hTDiffZ = new TH2F("hTDiffZ", "time(Array) - time(Recoil) vs Z [gated]; z [mm]; time diff [ns]", zRange[0], zRange[1], zRange[2], 500, tDiffRange[0], tDiffRange[1]);
tree->Draw("t - tB : z >> hTDiffZ", gate, "colz");
}
if( pID == pThetaCM ){
TH1F * hThetaCM[nExID];
TLegend * legend = new TLegend(0.8,0.2,0.99,0.8);
double maxCount = 0;
int startID = 0; // set the start ExID
for( int i = startID; i < nExID; i++){
hThetaCM[i] = new TH1F(Form("hThetaCM%d", i), Form("thetaCM [gated] (ExID=%d); thetaCM [deg]; count", i), 200, thetaCMRange[0], thetaCMRange[1]);
hThetaCM[i]->SetLineColor(i+1-startID);
hThetaCM[i]->SetFillColor(i+1-startID);
hThetaCM[i]->SetFillStyle(3000+i-startID);
tree->Draw(Form("thetaCM>>hThetaCM%d", i), gate + Form("&& ExID==%d", i), "");
legend->AddEntry(hThetaCM[i], Form("Ex=%5.1f MeV", exList[i]));
double max = hThetaCM[i]->GetMaximum();
if( max > maxCount ) maxCount = max;
}
for( int i = startID; i < nExID; i++){
hThetaCM[i]->GetYaxis()->SetRangeUser(1, maxCount * 1.2);
if( i == startID ) {
hThetaCM[i]->Draw();
}else{
hThetaCM[i]->Draw("same");
}
}
legend->Draw();
}
if( pID == pThetaCM_Z ){
TH2F *hThetaCM_Z = new TH2F("hThetaCM_Z","ThetaCM vs Z ; Z [mm]; thetaCM [deg]",zRange[0], zRange[1], zRange[2], 200, thetaCMRange[0], thetaCMRange[1]);
tree->Draw("thetaCM:z>>hThetaCM_Z",gate,"col");
if( shownKELines){
for( int i = 0; i < nExID ; i++){
txList->At(i)->Draw("same");
}
}
}
if( pID == pExCal ){
TH1F * hExCal = new TH1F("hExCal", Form("calculated Ex [gated]; Ex [MeV]; count / %.2f keV", (ExRange[1]-ExRange[0])/400.*1000), 400, ExRange[0], ExRange[1]);
tree->Draw("ExCal>>hExCal", gate, "");
Isotope hRecoil(reactionConfig.recoilHeavyA, reactionConfig.recoilHeavyZ);
double Sn = hRecoil.CalSp(0,1);
double Sp = hRecoil.CalSp(1,0);
double Sa = hRecoil.CalSp2(4,2);
double S2n = hRecoil.CalSp(0, 2);
printf("Heavy recoil: %s \n", hRecoil.Name.c_str());
printf("Sn : %f MeV/u \n", Sn);
printf("Sp : %f MeV/u \n", Sp);
printf("Sa : %f MeV/u \n", Sa);
printf("S2n : %f MeV/u \n", S2n);
double yMax = hExCal->GetMaximum();
TLine * lineSn = new TLine(Sn, 0, Sn, yMax); lineSn->SetLineColor(2); lineSn->Draw("");
TLine * lineSp = new TLine(Sp, 0, Sp, yMax); lineSp->SetLineColor(4); lineSp->Draw("same");
TLine * lineSa = new TLine(Sa, 0, Sa, yMax); lineSa->SetLineColor(6); lineSa->Draw("same");
TLine * lineS2n = new TLine(S2n, 0, S2n, yMax); lineS2n->SetLineColor(8); lineS2n->Draw("same");
TLatex * text = new TLatex();
text->SetTextFont(82);
text->SetTextSize(0.06);
text->SetTextColor(2); text->DrawLatex(Sn, yMax*0.9, "S_{n}");
text->SetTextColor(4); text->DrawLatex(Sp, yMax*0.9, "S_{p}");
text->SetTextColor(6); text->DrawLatex(Sa, yMax*0.9, "S_{a}");
text->SetTextColor(8); text->DrawLatex(S2n, yMax*0.9, "S_{2n}");
}
if( pID == pRecoilRThetaCM ){
TH2F * hRecoilRThetaCM = new TH2F("hRecoilRThetaCM", "RecoilR - thetaCM [gated]; thetaCM [deg]; RecoilR [mm]", 400, 0, 60, 400,0, rhoRecoilOut);
tree->Draw("rhoRecoil:thetaCM>>hRecoilRThetaCM", gate, "colz");
}
if( pID == pArrayXY ){
TH2F * hArrayXY = new TH2F("hArrayXY", "Array-XY [gated]; X [mm]; Y [mm]", 400, -prepDist*1.5, prepDist*1.5, 400, -prepDist*1.5, prepDist*1.5);
tree->Draw("yArray:xArray>>hArrayXY", gate, "colz");
}
if( pID == pInfo ){
TLatex text;
text.SetNDC();
text.SetTextFont(82);
text.SetTextSize(0.06);
text.SetTextColor(2);
text.DrawLatex(0., 0.9, Reaction);
text.DrawLatex(0., 0.8, msg2);
text.SetTextColor(1);
text.DrawLatex(0., 0.7, "gate:");
text.SetTextColor(2);
//check gate text length, if > 30, break by "&&"
int ll = gate.Length();
if( ll > 30 ) {
vector<string> strList = AnalysisLib::SplitStr( (string) gate.Data(), "&&");
for( int i = 0; i < strList.size(); i++){
text.DrawLatex(0., 0.6 - 0.05*i, (TString) strList[i]);
}
}else{
text.DrawLatex(0., 0.6, gate);
}
if( xBeam != 0.0 || yBeam != 0.0 ){
text.DrawLatex(0.0, 0.1, Form("Bema pos: (%4.1f, %4.1f) mm", xBeam, yBeam));
}
}
if( pID == pElum1XY ){
TH2F * hElum1XY = new TH2F("hElum1XY", Form("Elum-1 XY [gated] @ %.0f mm ; X [mm]; Y [mm]", elum1), 400, -elumRange, elumRange, 400, -elumRange, elumRange);
tree->Draw("yElum1:xElum1>>hElum1XY", gate, "colz");
double count = hElum1XY->GetEntries();
if( count < 2000. ) {
hElum1XY->SetMarkerStyle(7);
if( count < 500. ) hElum1XY->SetMarkerStyle(3);
hElum1XY->Draw("scat");
}
}
if( pID == pEElum1R ){
TH2F * hEElum1Rho = new TH2F("hEElum1Rho", "Elum-1 E-R [gated]; R[mm]; Energy[MeV]", 400, 0, elumRange, 400, eRange[0], eRange[1]);
tree->Draw("Tb:rhoElum1>>hEElum1Rho", gate, "colz");
}
if( pID == pElum1RThetaCM){
int angBin = 400;
TH2F * hElum1RThetaCM = new TH2F("hElum1RThetaCM", "Elum-1 rho vs ThetaCM [gated]; thatCM [deg]; Elum- rho [mm]", angBin, thetaCMRange[0], thetaCMRange[1], 400, 0, elumRange);
tree->Draw("rhoElum1:thetaCM>>hElum1RThetaCM", gate, "colz");
TH1F * htemp = (TH1F *) hElum1RThetaCM->ProjectionX("htemp");
double rel = (thetaCMRange[1] - thetaCMRange[0])*1.0/angBin;
printf("angular resolution : %f deg \n", rel);
vector<double> xList;
double old_y = 0;
for( int i = 1; i <= angBin; i++){
double y = htemp->GetBinContent(i);
if( old_y == 0 && y > 0) xList.push_back(htemp->GetBinCenter(i));
if( old_y > 0 && y == 0 ) xList.push_back(htemp->GetBinCenter(i));
old_y = y;
}
printf("list of gaps :\n");
for( int i = 0; i < (int) xList.size(); i+=2){
printf("%d | %.3f - %.3f deg\n", i, xList[i], xList[i+1]);
}
TF1 f1("f1", "sin(x)");
double acceptance = 0;
double err1 = 0;
double err2 = 0;
for( int i = 0; i < (int) xList.size(); i += 2 ){
acceptance += f1.Integral(xList[i] * TMath::DegToRad(), xList[i+1] * TMath::DegToRad() ) * TMath::TwoPi();
err1 += f1.Integral((xList[i]-rel) * TMath::DegToRad(), (xList[i+1] + rel) * TMath::DegToRad() ) * TMath::TwoPi();
err2 += f1.Integral((xList[i]+rel) * TMath::DegToRad(), (xList[i+1] - rel) * TMath::DegToRad() ) * TMath::TwoPi();
}
printf("acceptance = %f sr +- %f \n", acceptance, (err1-err2)/2);
TLatex text;
text.SetTextFont(82);
text.SetTextSize(0.06);
text.SetTextColor(2);
text.SetTextAngle(90);
for( int i = 0; i < (int) xList.size(); i++){
text.DrawLatex(xList[i], elumRange/2, Form("%.2f", xList[i]));
}
text.SetNDC();
text.SetTextAngle(0);
text.DrawLatex(0.15, 0.15, Form("accp. = %.2f(%.2f) msr", acceptance * 1000., (err1-err2)*1000./2));
}
if( pID == pHitID ){
printf("=======================meaning of Hit ID\n");
printf(" 1 = light recoil hit array & heavy recoil hit recoil\n");
printf(" 0 = no detector\n");
printf(" -1 = light recoil go opposite side of array\n");
printf(" -2 = light recoil hit > det width\n");
printf(" -3 = light recoil hit > array \n");
printf(" -4 = light recoil hit blocker \n");
printf(" -10 = light recoil orbit radius too big \n");
printf(" -11 = light recoil orbit radius too small\n");
printf(" -12 = when reocol at the same side of array, light recoil blocked by recoil detector\n");
printf(" -13 = more than 3 loops\n");
printf(" -14 = heavy recoil did not hit recoil \n");
printf(" -15 = cannot find hit on array\n");
printf(" -20 = unknown\n");
printf("===========================================\n");
TH1F * hHit = new TH1F("hHit", "hit; hit-ID; count", 13, -11, 2);
tree->Draw("hit>>hHit", "", "");
}
///#######################################################
}
cCheck->Modified();
cCheck->Update();
if( outputCanvas ){
TDatime dateTime;
TString outPNGName = Form("Sim_%d%02d%02d_%06d.png", dateTime.GetYear(), dateTime.GetMonth(), dateTime.GetDay(), dateTime.GetTime());
cCheck->SaveAs(outPNGName);
printf("%s\n", outPNGName.Data());
gROOT->ProcessLine(".q");
}
}
///============================================================
///============================================================
double * FindRange(TString branch, TString gate, TTree * tree, double output[2]){
tree->Draw(Form("%s>>temp1", branch.Data()), gate);
TH1F * temp1 = (TH1F *) gROOT->FindObjectAny("temp1");
output[1] = temp1->GetXaxis()->GetXmax();
output[0] = temp1->GetXaxis()->GetXmin();
delete temp1;
return output;
}
double ExtractNumber(int index, TMacro * macro){
TString field = macro->GetListOfLines()->At(index)->GetName();
int pos = field.First('/');
if( pos >= 0 ) field.Remove(pos);
return field.Atof();
}
TString ExtractString(int index, TMacro * macro){
TString field = macro->GetListOfLines()->At(index)->GetName();
int pos = field.First('/');
if( pos >= 0 ) field.Remove(pos);
return field;
}
vector<TString> StringToVector(TString str){
vector<TString> temp;
bool startFlag = false;
bool endFlag = false;
string jaja="";
for(int i = 0; i < str.Length(); i++){
if( str[i] == '{' ) {
startFlag = true;
continue;
}
if( str[i] == ' '){
continue;
}
if( startFlag && !endFlag){
if( str[i] == ',' ){
temp.push_back(jaja);
jaja="";
continue;
}
if( str[i] == '}') {
temp.push_back(jaja);
endFlag = true;
continue;
}
jaja += str[i];
}
}
return temp;
}
vector<int> intConvertor(vector<TString> arr){
vector<int> out ;
for( int i = 0 ; i < (int) arr.size(); i++){
out.push_back( arr[i].Atoi());
}
return out;
}
vector<double> doubleConvertor(vector<TString> arr){
vector<double> out ;
for( int i = 0 ; i < (int) arr.size(); i++){
out.push_back( arr[i].Atof());
}
return out;
}
plotID StringToPlotID(TString str){
if( str == "pEZ") return plotID::pEZ; ///0
if( str == "pRecoilXY") return plotID::pRecoilXY; /// 1
if( str == "pRecoilXY1" ) return plotID::pRecoilXY1; /// 2
if( str == "pRecoilXY2" ) return plotID::pRecoilXY2; /// 3
if( str == "pRecoilRZ" ) return plotID::pRecoilRZ; /// 4
if( str == "pRecoilRTR" ) return plotID::pRecoilRTR; /// 5
if( str == "pTDiffZ" ) return plotID::pTDiffZ; /// 6
if( str == "pThetaCM" ) return plotID::pThetaCM; /// 7
if( str == "pThetaCM_Z" ) return plotID::pThetaCM_Z; /// 8
if( str == "pExCal" ) return plotID::pExCal; /// 9
if( str == "pRecoilRThetaCM" ) return plotID::pRecoilRThetaCM; /// 10
if( str == "pArrayXY" ) return plotID::pArrayXY; /// 11
if( str == "pInfo" ) return plotID::pInfo; /// 12
if( str == "pHitID" ) return plotID::pHitID; /// 13
if( str == "pElum1XY" ) return plotID::pElum1XY; /// 14
if( str == "pEElum1R" ) return plotID::pEElum1R; /// 14
if( str == "pElum1RThetaCM" ) return plotID::pElum1RThetaCM; /// 15
if( str == "pEmpty" ) return plotID::pEmpty ; /// 16
return plotID::pEmpty;
}

656
Cleopatra/Check_Simulation_obsolete.C
View File

@ -1,656 +0,0 @@
#include <TFile.h>
#include <TTree.h>
#include <TCanvas.h>
#include <TROOT.h>
#include <TObjArray.h>
#include <TStyle.h>
#include <TH2F.h>
#include <TH1F.h>
#include <TF1.h>
#include <TArc.h>
#include <TMath.h>
#include <TLine.h>
#include <TSpectrum.h>
#include <TGraph.h>
#include <TLegend.h>
#include <TLatex.h>
#include <TMacro.h>
#include <TObjArray.h>
#include <fstream>
#include <TCutG.h>
#include "../Armory/AnalysisLib.h"
#include "../Armory/ClassDetGeo.h"
#include "../Armory/ClassReactionConfig.h"
#include "../Cleopatra/ClassIsotope.h"
#include "../Cleopatra/ClassTransfer.h"
double * FindRange(TString branch, TString gate, TTree * tree, double output[2]);
double ExtractNumber(int index, TMacro * macro);
TString ExtractString(int index, TMacro * macro);
vector<TString> StringToVector(TString str);
vector<int> intConvertor(vector<TString> arr);
vector<double> doubleConvertor(vector<TString> arr);
enum plotID { pEZ, /// 0
pRecoilXY, /// 1
pRecoilXY1, /// 2
pRecoilXY2, /// 3
pRecoilRZ, /// 4
pRecoilRTR, /// 5
pTDiffZ, /// 6
pThetaCM, /// 7
pThetaCM_Z, /// 8
pExCal, /// 9
pRecoilRThetaCM, /// 10
pArrayXY, /// 11
pInfo, /// 12
pHitID, /// 13
pElum1XY, /// 14
pEElum1R, /// 15
pElum1RThetaCM, /// 16
pEmpty }; /// 17
plotID StringToPlotID(TString str);
//*=====================================================
void Check_Simulation(TString filename = "transfer.root",
TString configFile = "../working/Check_Simulation_Config.txt",
Int_t padSize = 500,
bool outputCanvas = false){
printf("=========================== Check_Simulation.C\n");
TMacro * config = new TMacro(configFile);
int numLine = config->GetListOfLines()->GetSize();
int startLineNum = 0;
for( int i = 0; i < numLine ; i++){
TString haha = config->GetListOfLines()->At(i)->GetName();
haha.Remove(4);
if( haha != "////" ) {
startLineNum = i;
break;
}
}
TString gate = ExtractString(startLineNum+1, config);
double elumRange = ExtractNumber(startLineNum+2, config);
std::vector<double> thetaCMRange = doubleConvertor( StringToVector( ExtractString(startLineNum+3,config) ));
bool shownKELines = (ExtractString(startLineNum+4, config).Remove(4) == "true" ? true : false);
bool isOverRideEx = (ExtractString(startLineNum+5, config).Remove(4) == "true" ? true : false);
std::vector<double> oExRange = doubleConvertor( StringToVector ( ExtractString(startLineNum+6, config )));
printf("%s \n", gate.Data());
///==== config Canvas
std::vector<TString> plotConfig = StringToVector( ExtractString(startLineNum, config));
std::vector<plotID> canvas;
int colCount = 0;
int colCount_new = 0;
int rowCount = 1;
for( int i = 0; i < (int) plotConfig.size(); i++){
if( plotConfig[i] == "break" ) {
rowCount ++;
if( colCount_new > colCount ) colCount = colCount_new;
colCount_new = 0;
continue;
}
canvas.push_back( StringToPlotID(plotConfig[i]));
colCount_new ++;
}
if( colCount == 0 ) colCount = colCount_new;
//printf("plot row: %d, col: %d \n", rowCount, colCount);
std::vector<int> Div = {colCount, rowCount};
TFile * file = new TFile(filename, "read");
TTree * tree = (TTree*) file->Get("tree");
TObjArray * fxList = (TObjArray *) file->FindObjectAny("EZCurve");
TObjArray * txList = (TObjArray *) file->FindObjectAny("thetaCM_Z");
gStyle->SetOptStat("");
gStyle->SetStatY(0.9);
gStyle->SetStatX(0.9);
gStyle->SetStatW(0.4);
gStyle->SetStatH(0.2);
gStyle->SetLabelSize(0.05, "XY");
gStyle->SetTitleFontSize(0.1);
//*================== detGeoID
TMacro * detGeoIDTxt = (TMacro *) file->FindObjectAny("detGeoID");
int detGeoID = atoi(detGeoIDTxt->GetListOfLines()->At(0)->GetName());
//*================== reactionConfig
TMacro * reactionConfigTxt = (TMacro *) file->FindObjectAny("reactionConfig");
TString Reaction = reactionConfigTxt->GetName();
ReactionConfig reactionConfig(reactionConfigTxt);
Recoil recoil = reactionConfig.recoil[detGeoID];
int nEvent = reactionConfig.numEvents;
printf("number of events generated : %d \n", nEvent);
reactionConfig.Print(detGeoID, false);
//*================================== detetcor Geometry
printf("=================================\n");
printf(" loading detector Geometry.\n");
TMacro * detGeoTxt = (TMacro *) file->FindObjectAny("detGeo");
DetGeo detGeo(detGeoTxt);
Array array = detGeo.array[detGeoID];
detGeo.Print();
array.Print();
printf("=================================\n");
int numDet = array.colDet * array.rowDet ;
double zRange[3] = {400, -1000, 1000}; /// zRange[0] = nBin
zRange[1] = array.zMin - 50;
zRange[2] = array.zMax + 50;
printf(" zRange : %f - %f \n", zRange[1], zRange[2]);
printf("=================================\n");
//*========================================= Ex List;
double ExRange[2];
int numEx = 0;
ExcitedEnergies exList;
// if DEBA_ExList exist, use this, else use the recoil ExList
TMacro * exListTxt = (TMacro *) file->FindObjectAny("DWBA_ExList");
ExRange[0] = 9999999;
ExRange[1] = -9999999;
if( exListTxt == nullptr ){
exList = reactionConfig.exList[detGeoID];
numEx = exList.ExList.size();
for( size_t i = 0; i < numEx; i++ ){
double ex = exList.ExList[i].Ex;
if( ex < ExRange[0] ) ExRange[0] = ex;
if( ex > ExRange[1] ) ExRange[1] = ex;
}
}else{
numEx = exListTxt->GetListOfLines()->GetSize()-1;
for( int i = 1 ; i <= numEx ; i++){
std::vector<std::string> tempStr = AnalysisLib::SplitStr(exListTxt->GetListOfLines()->At(i)->GetName(), " ");
double ex = atof(tempStr[0].c_str());
if( ex < ExRange[0] ) ExRange[0] = ex;
if( ex > ExRange[1] ) ExRange[1] = ex;
exList.Add(ex, atof(tempStr[1].c_str()), 1.0, 0.00);
}
}
exList.Print();
double dExRange = ExRange[1] - ExRange[0];
ExRange[0] = ExRange[0] - 0.3 - dExRange * 0.1;
ExRange[1] = ExRange[1] + 0.3 + dExRange * 0.1;
printf("Number of Ex states = %d \n", numEx);
//*=================================== calculate Ranges
//eRange by zRange and exList
TransferReaction transfer;
transfer.SetReactionSimple( reactionConfig.beamA,
reactionConfig.beamZ,
reactionConfig.targetA,
reactionConfig.targetZ,
recoil.lightA,
recoil.lightZ,
reactionConfig.beamEnergy);
double QQ = transfer.GetCMTotalEnergy();
double gamm = transfer.GetReactionGamma();
double mass = transfer.GetMass_b();
double slope = transfer.GetEZSlope( detGeo.Bfield);
double eRange[2] = {0, 10};
eRange[1] = zRange[2] * slope;
// printf("intercept of 0 MeV : %f MeV \n", intercept);
printf("eRange 0 MeV : %f MeV \n", eRange[1]);
double dERange = eRange[1] - eRange[0];
eRange[0] = eRange[0] - dERange * 0.1;
eRange[1] = eRange[1] + dERange * 0.1;
//thetaCMRange
double momentum = transfer.GetMomentumbCM();
double beta = transfer.GetReactionBeta();
double alpha = slope / beta;
double thetaMax = acos( (beta * QQ- alpha / gamm * zRange[2])/momentum) * TMath::RadToDeg();
thetaCMRange[1] = (int) TMath::Ceil(thetaMax/10.)*10;
///printf(" momentum : %f \n", momentum);
///printf(" thetaCM Max : %f \n", thetaMax);
///printf(" thetaCM Range : %d \n", thetaCMRange[1]);
double recoilERange[2] = {0, 100};
//===================================================
printf("============================== Gate\n");
printf("gate : %s\n", gate.Data());
printf("====================================\n");
Int_t size[2] = {padSize,padSize}; ///x,y, single Canvas size
TCanvas * cCheck = new TCanvas("cCheck", "Check For Simulation", 0, 0, size[0]*Div[0], size[1]*Div[1]);
if(cCheck->GetShowEditor() )cCheck->ToggleEditor();
if(cCheck->GetShowToolBar() )cCheck->ToggleToolBar();
cCheck->Divide(Div[0],Div[1]);
for( int i = 1; i <= Div[0]*Div[1] ; i++){
cCheck->cd(i);
if( canvas[i-1] == pThetaCM ) {
cCheck->cd(i)->SetGrid(0,0);
cCheck->cd(i)->SetLogy();
}
if( canvas[i-1] == pHitID ){
cCheck->cd(i)->SetLogy();
}
plotID pID = canvas[i-1];
///########################################
if( pID == pEZ){
TH2F * hez = new TH2F("hez", Form("e-z [gated] @ %5.0f mm; z [mm]; e [MeV]", array.firstPos), zRange[0], zRange[1], zRange[2],
400, eRange[0], eRange[1]);
tree->Draw("e:z>>hez", gate, "colz");
if( shownKELines){
for( int i = 0; i < numEx ; i++){
fxList->At(i)->Draw("same");
}
}
}
if( pID == pRecoilXY ){
TH2F * hRecoilXY = new TH2F("hRecoilXY", Form("RecoilXY [gated] @ %4.0f mm; X [mm]; Y [mm]", detGeo.aux[detGeoID].detPos ),
400, -detGeo.aux[detGeoID].outerRadius, detGeo.aux[detGeoID].outerRadius,
400, -detGeo.aux[detGeoID].outerRadius, detGeo.aux[detGeoID].outerRadius);
tree->Draw("yRecoil:xRecoil>>hRecoilXY", gate, "colz");
TArc * detArc1 = new TArc(0,0, detGeo.aux[detGeoID].outerRadius);
detArc1->SetLineColor(kBlue-8);
detArc1->SetFillStyle(0);
detArc1->Draw("same");
TArc * detArc2 = new TArc(0,0, detGeo.aux[detGeoID].innerRadius);
detArc2->SetLineColor(kBlue-8);
detArc2->SetFillStyle(0);
detArc2->Draw("same");
if( reactionConfig.beamX != 0. || reactionConfig.beamY != 0. ){
TArc * arc = new TArc(reactionConfig.beamX, reactionConfig.beamY, 1);
arc->SetLineColor(2);
detArc1->SetFillStyle(0);
arc->Draw("same");
}
}
if( pID == pRecoilXY1 ){
TH2F * hRecoilXY1 = new TH2F("hRecoilXY1", Form("RecoilXY-1 [gated] @ %4.0f mm; X [mm]; Y [mm]", detGeo.aux[detGeoID].detPos1 ),
400, -detGeo.aux[detGeoID].outerRadius, detGeo.aux[detGeoID].outerRadius,
400, -detGeo.aux[detGeoID].outerRadius, detGeo.aux[detGeoID].outerRadius);
tree->Draw("yRecoil1:xRecoil1>>hRecoilXY1", gate, "colz");
}
if( pID == pRecoilXY2 ){
TH2F * hRecoilXY2 = new TH2F("hRecoilXY2", Form("RecoilXY-2 [gated] @ %4.0f mm; X [mm]; Y [mm]", detGeo.aux[detGeoID].detPos2 ),
400, -detGeo.aux[detGeoID].outerRadius, detGeo.aux[detGeoID].outerRadius,
400, -detGeo.aux[detGeoID].outerRadius, detGeo.aux[detGeoID].outerRadius);
tree->Draw("yRecoil2:xRecoil2>>hRecoilXY2", gate, "colz");
}
if( pID == pRecoilRZ ){
TH2F * hRecoilRZ = new TH2F("hRecoilRZ", "RecoilR - Z [gated]; z [mm]; RecoilR [mm]", zRange[0], zRange[1], zRange[2], 400,0, detGeo.aux[detGeoID].outerRadius);
tree->Draw("rhoRecoil:z>>hRecoilRZ", gate, "colz");
}
if( pID == pRecoilRTR ){
FindRange("TB", gate, tree, recoilERange);
TH2F * hRecoilRTR = new TH2F("hRecoilRTR", "RecoilR - recoilE [gated]; recoil Energy [MeV]; RecoilR [mm]", 500, recoilERange[0], recoilERange[1], 500, 0, detGeo.aux[detGeoID].outerRadius);
tree->Draw("rhoRecoil:TB>>hRecoilRTR", gate, "colz");
}
if( pID == pTDiffZ ){
double tDiffRange [2];
FindRange("t-tB", gate, tree, tDiffRange);
TH2F * hTDiffZ = new TH2F("hTDiffZ", "time(Array) - time(Recoil) vs Z [gated]; z [mm]; time diff [ns]", zRange[0], zRange[1], zRange[2], 500, tDiffRange[0], tDiffRange[1]);
tree->Draw("t - tB : z >> hTDiffZ", gate, "colz");
}
if( pID == pThetaCM ){
TH1F * hThetaCM[numEx];
TLegend * legend = new TLegend(0.8,0.2,0.99,0.8);
double maxCount = 0;
int startID = 0; // set the start ExID
for( int i = startID; i < numEx; i++){
hThetaCM[i] = new TH1F(Form("hThetaCM%d", i), Form("thetaCM [gated] (ExID=%d); thetaCM [deg]; count", i), 200, thetaCMRange[0], thetaCMRange[1]);
hThetaCM[i]->SetLineColor(i+1-startID);
hThetaCM[i]->SetFillColor(i+1-startID);
hThetaCM[i]->SetFillStyle(3000+i-startID);
tree->Draw(Form("thetaCM>>hThetaCM%d", i), gate + Form("&& ExID==%d", i), "");
legend->AddEntry(hThetaCM[i], Form("Ex=%5.1f MeV", exList.ExList[i].Ex));
double max = hThetaCM[i]->GetMaximum();
if( max > maxCount ) maxCount = max;
}
for( int i = startID; i < numEx; i++){
hThetaCM[i]->GetYaxis()->SetRangeUser(1, maxCount * 1.2);
if( i == startID ) {
hThetaCM[i]->Draw();
}else{
hThetaCM[i]->Draw("same");
}
}
legend->Draw();
}
if( pID == pThetaCM_Z ){
TH2F *hThetaCM_Z = new TH2F("hThetaCM_Z","ThetaCM vs Z ; Z [mm]; thetaCM [deg]",zRange[0], zRange[1], zRange[2], 200, thetaCMRange[0], thetaCMRange[1]);
tree->Draw("thetaCM:z>>hThetaCM_Z",gate,"col");
if( shownKELines){
for( int i = 0; i < numEx ; i++){
txList->At(i)->Draw("same");
}
}
}
if( pID == pExCal ){
TH1F * hExCal = new TH1F("hExCal", Form("calculated Ex [gated]; Ex [MeV]; count / %.2f keV", (ExRange[1]-ExRange[0])/400.*1000), 400, ExRange[0], ExRange[1]);
tree->Draw("ExCal>>hExCal", gate, "");
Isotope hRecoil(recoil.heavyA, recoil.heavyZ);
double Sn = hRecoil.CalSp(0,1);
double Sp = hRecoil.CalSp(1,0);
double Sa = hRecoil.CalSp2(4,2);
double S2n = hRecoil.CalSp(0, 2);
printf("Heavy recoil: %s \n", hRecoil.Name.c_str());
printf("Sn : %f MeV/u \n", Sn);
printf("Sp : %f MeV/u \n", Sp);
printf("Sa : %f MeV/u \n", Sa);
printf("S2n : %f MeV/u \n", S2n);
double yMax = hExCal->GetMaximum();
TLine * lineSn = new TLine(Sn, 0, Sn, yMax); lineSn->SetLineColor(2); lineSn->Draw("");
TLine * lineSp = new TLine(Sp, 0, Sp, yMax); lineSp->SetLineColor(4); lineSp->Draw("same");
TLine * lineSa = new TLine(Sa, 0, Sa, yMax); lineSa->SetLineColor(6); lineSa->Draw("same");
TLine * lineS2n = new TLine(S2n, 0, S2n, yMax); lineS2n->SetLineColor(8); lineS2n->Draw("same");
TLatex * text = new TLatex();
text->SetTextFont(82);
text->SetTextSize(0.06);
text->SetTextColor(2); text->DrawLatex(Sn, yMax*0.9, "S_{n}");
text->SetTextColor(4); text->DrawLatex(Sp, yMax*0.9, "S_{p}");
text->SetTextColor(6); text->DrawLatex(Sa, yMax*0.9, "S_{a}");
text->SetTextColor(8); text->DrawLatex(S2n, yMax*0.9, "S_{2n}");
}
if( pID == pRecoilRThetaCM ){
TH2F * hRecoilRThetaCM = new TH2F("hRecoilRThetaCM", "RecoilR - thetaCM [gated]; thetaCM [deg]; RecoilR [mm]", 400, 0, 60, 400,0, detGeo.aux[detGeoID].outerRadius);
tree->Draw("rhoRecoil:thetaCM>>hRecoilRThetaCM", gate, "colz");
}
if( pID == pArrayXY ){
TH2F * hArrayXY = new TH2F("hArrayXY", "Array-XY [gated]; X [mm]; Y [mm]", 400, -array.detPerpDist*1.5, array.detPerpDist*1.5, 400, -array.detPerpDist*1.5, array.detPerpDist*1.5);
tree->Draw("yArray:xArray>>hArrayXY", gate, "colz");
}
if( pID == pInfo ){
TLatex text;
text.SetNDC();
text.SetTextFont(82);
text.SetTextSize(0.06);
text.SetTextColor(2);
text.DrawLatex(0., 0.9, Reaction);
text.DrawLatex(0., 0.8, detGeo.Bfield > 0 ? "out of plan" : "into plan");
text.SetTextColor(1);
text.DrawLatex(0., 0.7, "gate:");
text.SetTextColor(2);
//check gate text length, if > 30, break by "&&"
int ll = gate.Length();
if( ll > 30 ) {
vector<string> strList = AnalysisLib::SplitStr( (string) gate.Data(), "&&");
for( int i = 0; i < strList.size(); i++){
text.DrawLatex(0., 0.6 - 0.05*i, (TString) strList[i]);
}
}else{
text.DrawLatex(0., 0.6, gate);
}
if( reactionConfig.beamX != 0.0 || reactionConfig.beamY != 0.0 ){
text.DrawLatex(0.0, 0.1, Form("Bema pos: (%4.1f, %4.1f) mm", reactionConfig.beamX, reactionConfig.beamY));
}
}
if( pID == pElum1XY ){
TH2F * hElum1XY = new TH2F("hElum1XY", Form("Elum-1 XY [gated] @ %.0f mm ; X [mm]; Y [mm]", detGeo.aux[detGeoID].elumPos1), 400, -elumRange, elumRange, 400, -elumRange, elumRange);
tree->Draw("yElum1:xElum1>>hElum1XY", gate, "colz");
double count = hElum1XY->GetEntries();
if( count < 2000. ) {
hElum1XY->SetMarkerStyle(7);
if( count < 500. ) hElum1XY->SetMarkerStyle(3);
hElum1XY->Draw("scat");
}
}
if( pID == pEElum1R ){
TH2F * hEElum1Rho = new TH2F("hEElum1Rho", "Elum-1 E-R [gated]; R[mm]; Energy[MeV]", 400, 0, elumRange, 400, eRange[0], eRange[1]);
tree->Draw("Tb:rhoElum1>>hEElum1Rho", gate, "colz");
}
if( pID == pElum1RThetaCM){
int angBin = 400;
TH2F * hElum1RThetaCM = new TH2F("hElum1RThetaCM", "Elum-1 rho vs ThetaCM [gated]; thatCM [deg]; Elum- rho [mm]", angBin, thetaCMRange[0], thetaCMRange[1], 400, 0, elumRange);
tree->Draw("rhoElum1:thetaCM>>hElum1RThetaCM", gate, "colz");
TH1F * htemp = (TH1F *) hElum1RThetaCM->ProjectionX("htemp");
double rel = (thetaCMRange[1] - thetaCMRange[0])*1.0/angBin;
printf("angular resolution : %f deg \n", rel);
vector<double> xList;
double old_y = 0;
for( int i = 1; i <= angBin; i++){
double y = htemp->GetBinContent(i);
if( old_y == 0 && y > 0) xList.push_back(htemp->GetBinCenter(i));
if( old_y > 0 && y == 0 ) xList.push_back(htemp->GetBinCenter(i));
old_y = y;
}
printf("list of gaps :\n");
for( int i = 0; i < (int) xList.size(); i+=2){
printf("%d | %.3f - %.3f deg\n", i, xList[i], xList[i+1]);
}
TF1 f1("f1", "sin(x)");
double acceptance = 0;
double err1 = 0;
double err2 = 0;
for( int i = 0; i < (int) xList.size(); i += 2 ){
acceptance += f1.Integral(xList[i] * TMath::DegToRad(), xList[i+1] * TMath::DegToRad() ) * TMath::TwoPi();
err1 += f1.Integral((xList[i]-rel) * TMath::DegToRad(), (xList[i+1] + rel) * TMath::DegToRad() ) * TMath::TwoPi();
err2 += f1.Integral((xList[i]+rel) * TMath::DegToRad(), (xList[i+1] - rel) * TMath::DegToRad() ) * TMath::TwoPi();
}
printf("acceptance = %f sr +- %f \n", acceptance, (err1-err2)/2);
TLatex text;
text.SetTextFont(82);
text.SetTextSize(0.06);
text.SetTextColor(2);
text.SetTextAngle(90);
for( int i = 0; i < (int) xList.size(); i++){
text.DrawLatex(xList[i], elumRange/2, Form("%.2f", xList[i]));
}
text.SetNDC();
text.SetTextAngle(0);
text.DrawLatex(0.15, 0.15, Form("accp. = %.2f(%.2f) msr", acceptance * 1000., (err1-err2)*1000./2));
}
if( pID == pHitID ){
printf("=======================meaning of Hit ID\n");
printf(" 1 = light recoil hit array & heavy recoil hit recoil\n");
printf(" 0 = no detector\n");
printf(" -1 = light recoil go opposite side of array\n");
printf(" -2 = light recoil hit > det width\n");
printf(" -3 = light recoil hit > array \n");
printf(" -4 = light recoil hit blocker \n");
printf(" -10 = light recoil orbit radius too big \n");
printf(" -11 = light recoil orbit radius too small\n");
printf(" -12 = when reocol at the same side of array, light recoil blocked by recoil detector\n");
printf(" -13 = more than 3 loops\n");
printf(" -14 = heavy recoil did not hit recoil \n");
printf(" -15 = cannot find hit on array\n");
printf(" -20 = unknown\n");
printf("===========================================\n");
TH1F * hHit = new TH1F("hHit", "hit; hit-ID; count", 13, -11, 2);
tree->Draw("hit>>hHit", "", "");
}
}
cCheck->Modified();
cCheck->Update();
if( outputCanvas ){
TDatime dateTime;
TString outPNGName = Form("Sim_%d%02d%02d_%06d.png", dateTime.GetYear(), dateTime.GetMonth(), dateTime.GetDay(), dateTime.GetTime());
cCheck->SaveAs(outPNGName);
printf("%s\n", outPNGName.Data());
gROOT->ProcessLine(".q");
}
}
///============================================================
///============================================================
double * FindRange(TString branch, TString gate, TTree * tree, double output[2]){
tree->Draw(Form("%s>>temp1", branch.Data()), gate);
TH1F * temp1 = (TH1F *) gROOT->FindObjectAny("temp1");
output[1] = temp1->GetXaxis()->GetXmax();
output[0] = temp1->GetXaxis()->GetXmin();
delete temp1;
return output;
}
double ExtractNumber(int index, TMacro * macro){
TString field = macro->GetListOfLines()->At(index)->GetName();
int pos = field.First('/');
if( pos >= 0 ) field.Remove(pos);
return field.Atof();
}
TString ExtractString(int index, TMacro * macro){
TString field = macro->GetListOfLines()->At(index)->GetName();
int pos = field.First('/');
if( pos >= 0 ) field.Remove(pos);
return field;
}
vector<TString> StringToVector(TString str){
vector<TString> temp;
bool startFlag = false;
bool endFlag = false;
string jaja="";
for(int i = 0; i < str.Length(); i++){
if( str[i] == '{' ) {
startFlag = true;
continue;
}
if( str[i] == ' '){
continue;
}
if( startFlag && !endFlag){
if( str[i] == ',' ){
temp.push_back(jaja);
jaja="";
continue;
}
if( str[i] == '}') {
temp.push_back(jaja);
endFlag = true;
continue;
}
jaja += str[i];
}
}
return temp;
}
vector<int> intConvertor(vector<TString> arr){
vector<int> out ;
for( int i = 0 ; i < (int) arr.size(); i++){
out.push_back( arr[i].Atoi());
}
return out;
}
vector<double> doubleConvertor(vector<TString> arr){
vector<double> out ;
for( int i = 0 ; i < (int) arr.size(); i++){
out.push_back( arr[i].Atof());
}
return out;
}
plotID StringToPlotID(TString str){
if( str == "pEZ") return plotID::pEZ; /// 0
if( str == "pRecoilXY") return plotID::pRecoilXY; /// 1
if( str == "pThetaCM" ) return plotID::pThetaCM; /// 2
if( str == "pExCal" ) return plotID::pExCal; /// 2
if( str == "pArrayXY" ) return plotID::pArrayXY; /// 3
if( str == "pInfo" ) return plotID::pInfo; /// 4
if( str == "pElum1XY" ) return plotID::pElum1XY; /// 5
if( str == "pRecoilXY1" ) return plotID::pRecoilXY1; /// 6
if( str == "pRecoilXY2" ) return plotID::pRecoilXY2; /// 7
if( str == "pTDiffZ" ) return plotID::pTDiffZ; /// 8
if( str == "pRecoilRThetaCM" ) return plotID::pRecoilRThetaCM; /// 9
if( str == "pRecoilRZ" ) return plotID::pRecoilRZ; /// 10
if( str == "pEElum1R" ) return plotID::pEElum1R; /// 11
if( str == "pRecoilRTR" ) return plotID::pRecoilRTR; /// 12
if( str == "pThetaCM_Z" ) return plotID::pThetaCM_Z; /// 13
if( str == "pElum1RThetaCM" ) return plotID::pElum1RThetaCM; /// 14
if( str == "pHitID" ) return plotID::pHitID; /// 13
if( str == "pEmpty" ) return plotID::pEmpty ; /// 16
return plotID::pEmpty;
}

180
Cleopatra/ClassDecay.h
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@ -1,180 +0,0 @@
#ifndef decay_h
#define decay_h
#include "TVector3.h"
#include "../Cleopatra/ClassIsotope.h"
#include "../Armory/ClassReactionConfig.h"
//=======================================================
//#######################################################
// Class for Particle Decay
// B --> d + D
// input : TLorentzVector, emitting particle
// output : scattered TLorentzVector
//=======================================================
class Decay{
public:
Decay();
~Decay();
double GetQValue() { return Q;}
double GetAngleChange(){
TVector3 vD = PD.Vect();
TVector3 vB = PB.Vect();
vD.SetMag(1);
vB.SetMag(1);
double dot = vD.Dot(vB);
return TMath::ACos(dot)*TMath::RadToDeg() ;
}
double GetThetaCM() { return theta * TMath::RadToDeg();}
double GetCMMomentum(){ return k;}
TLorentzVector GetDaugther_d() {return Pd;}
TLorentzVector GetDaugther_D() {return PD;}
void SetMotherDaugther(Recoil recoil){
Isotope Mother(recoil.heavyA, recoil.heavyZ);
Isotope Daugther_D(recoil.decayA, recoil.decayZ);
Isotope Daugther_d(recoil.heavyA - recoil.decayA, recoil.heavyZ - recoil.decayZ);
zB = recoil.heavyZ;
zD = recoil.decayZ;
zd = recoil.heavyZ - recoil.decayZ;
mB = Mother.Mass;
mD = Daugther_D.Mass;
md = Daugther_d.Mass;
double Q = mB - mD - md;
printf("====== decay mode : %s --> %s + %s, Q = %.3f MeV \n", Mother.Name.c_str(), Daugther_d.Name.c_str(), Daugther_D.Name.c_str(), Q);
isMotherSet = true;
}
void SetMotherDaugther(int AB, int zB, int AD, int zD){
Isotope Mother(AB, zB);
Isotope Daugther_D(AD, zD);
Isotope Daugther_d(AB-AD, zB-zD);
mB = Mother.Mass;
mD = Daugther_D.Mass;
md = Daugther_d.Mass;
double Q = mB - mD - md;
printf("====== decay mode : %s --> %s + %s, Q = %.3f MeV \n", Mother.Name.c_str(), Daugther_d.Name.c_str(), Daugther_D.Name.c_str(), Q);
isMotherSet = true;
}
int CalDecay(TLorentzVector P_mother, double ExB, double ExD, double normOfReactionPlane = 0){
if( !isMotherSet ) {
return -1;
}
this->PB = P_mother;
double MB = mB + ExB; ///mother
double MD = mD + ExD; ///Big_Daugther
Q = MB - MD - md;
if( Q < 0 ) {
this->PD = this->PB;
dTheta = TMath::QuietNaN();
k = TMath::QuietNaN();
return -2;
}
//clear
TLorentzVector temp(0,0,0,0);
PD = temp;
Pd = temp;
PD.SetUniqueID(zD);
Pd.SetUniqueID(zd);
k = TMath::Sqrt((MB+MD+md)*(MB+MD-md)*(MB-MD+md)*(MB-MD-md))/2./MB;
//in mother's frame, assume isotropic decay
theta = TMath::ACos(2 * gRandom->Rndm() - 1) ;
//for non isotropic decay, edit f1.
//theta = TMath::ACos(f1->GetRandom());
double phi = TMath::TwoPi() * gRandom->Rndm();
PD.SetE(TMath::Sqrt(mD * mD + k * k ));
PD.SetPz(k);
PD.SetTheta(theta);
PD.SetPhi(phi);
Pd.SetE(TMath::Sqrt(md * md + k * k ));
Pd.SetPz(k);
Pd.SetTheta(theta + TMath::Pi());
Pd.SetPhi(phi + TMath::Pi());
PD.RotateY(TMath::Pi()/2.);
PD.RotateZ(normOfReactionPlane);
Pd.RotateY(TMath::Pi()/2.);
Pd.RotateZ(normOfReactionPlane);
//Transform to Lab frame;
TVector3 boost = PB.BoostVector();
PD.Boost(boost);
Pd.Boost(boost);
return 1;
}
private:
TLorentzVector PB, Pd, PD;
double mB, mD, md;
double zB, zD, zd;
double theta;
TF1 * f1;
bool isMotherSet;
double Q;
double k; // momentum in B-frame
double dTheta; // change of angle
};
Decay::Decay(){
TLorentzVector temp(0,0,0,0);
PB = temp;
Pd = temp;
PD = temp;
mB = TMath::QuietNaN();
mD = TMath::QuietNaN();
md = TMath::QuietNaN();
zB = 0;
zD = 0;
zd = 0;
theta = TMath::QuietNaN();
k = TMath::QuietNaN();
Q = TMath::QuietNaN();
dTheta = TMath::QuietNaN();
isMotherSet = false;
// f1 = new TF1("f1", "(1+ROOT::Math::legendre(2,x))/2.", -1, 1); //need to compile ROOT with -Dmathmore=ON
f1 = new TF1("f1", "sin(x)", -1, 1);
}
Decay::~Decay(){
delete f1;
}
#endif

551
Cleopatra/ClassHelios.h
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@ -1,551 +0,0 @@
#ifndef HELIOS_Library_h
#define HELIOS_Library_h
#include "TBenchmark.h"
#include "TLorentzVector.h"
#include "TVector3.h"
#include "TMath.h"
#include "TFile.h"
#include "TTree.h"
#include "TRandom.h"
#include "TMacro.h"
#include "TGraph.h"
#include <vector>
#include <fstream>
#include "../Armory/AnalysisLib.h"
#include "../Armory/ClassDetGeo.h"
#include "../Armory/ClassReactionConfig.h"
//=======================================================
//#######################################################
//Class for HELIOS
//input Lorentz vector, detector configuration
//output e, z, Ex, thetaCM, etc
//=======================================================
struct trajectory{
double theta, phi;
double vt, vp; // tranvser and perpendicular velocity
double rho; // orbit radius
double z0, t0; // position cycle
double x, y, z; // hit position
double t; //actual orbit time;
double R; //hit radius = sqrt(x^2+y^2);
int detID, detRowID;
int loop;
double effLoop;
void PrintTrajectory(){
printf("=====================\n");
printf(" theta : %f deg\n", theta*TMath::RadToDeg());
printf(" phi : %f deg\n", phi*TMath::RadToDeg());
printf(" vt : %f mm/ns\n", vt);
printf(" vp : %f mm/ns\n", vp);
printf(" rho : %f mm\n", rho);
printf(" z0 : %f mm\n", z0);
printf(" t0 : %f ns\n", t0);
printf("(x, y, z) : (%f, %f. %f) mm\n", x, y, z);
printf(" R : %f mm\n", R);
printf(" t : %f ns\n", t);
printf(" effLoop : %f cycle\n", effLoop);
printf(" Loop : %d cycle\n", loop);
printf(" detRowID : %d \n", detRowID);
printf(" detID : %d \n", detID);
}
void Clear(){
theta = TMath::QuietNaN();
phi = TMath::QuietNaN();
vt = TMath::QuietNaN();
vp = TMath::QuietNaN();
rho = TMath::QuietNaN();
z0 = TMath::QuietNaN();
t0 = TMath::QuietNaN();
x = TMath::QuietNaN();
y = TMath::QuietNaN();
z = TMath::QuietNaN();
effLoop = TMath::QuietNaN();
detID = -1;
detRowID = -1;
loop = -1;
}
};
class HELIOS{
public:
HELIOS();
HELIOS(std::string detGeoFile, unsigned short ID);
~HELIOS();
void SetCoincidentWithRecoil(bool TorF){ this->isCoincidentWithRecoil = TorF;}
bool GetCoincidentWithRecoil(){return this->isCoincidentWithRecoil;}
bool SetDetectorGeometry(std::string filename, unsigned short ID);
void SetBeamPosition(double x, double y) { xOff = x; yOff = y;}
void OverrideMagneticField(double BField);
void OverrideFirstPos(double firstPos);
void OverrideDetectorDistance(double perpDist);
void OverrideDetectorFacing(bool isOutside);
int CheckDetAcceptance();
int CalArrayHit(TLorentzVector Pb, bool debug = false);
int CalRecoilHit(TLorentzVector PB);
void CalTrajectoryPara(TLorentzVector P, bool isLightRecoil);
int GetNumberOfDetectorsInSamePos(){return array.rowDet;}
double GetEnergy()const {return e;}
double GetDetX() const {return detX;} // position in each detector, range from -1, 1
/// clockwise rotation for B-field along the z-axis, sign = 1.
double XPos(double Zpos, double theta, double phi, double rho, int sign){
if( TMath::IsNaN(Zpos) ) return TMath::QuietNaN();
return rho * ( TMath::Sin( TMath::Tan(theta) * Zpos / rho - sign * phi ) + sign * TMath::Sin(phi) ) + xOff;
}
double YPos(double Zpos, double theta, double phi, double rho, int sign){
if( TMath::IsNaN(Zpos) ) return TMath::QuietNaN();
return rho * sign * (TMath::Cos( TMath::Tan(theta) * Zpos / rho - sign * phi ) - TMath::Cos(phi)) + yOff;
}
double RPos(double Zpos, double theta, double phi, double rho, int sign){
if( TMath::IsNaN(Zpos) ) return TMath::QuietNaN();
double x = XPos(Zpos, theta, phi, rho, sign) ;
double y = YPos(Zpos, theta, phi, rho, sign) ;
return sqrt(x*x+y*y);
}
double GetXPos(double ZPos){ return TMath::IsNaN(ZPos) ? TMath::QuietNaN() : XPos( ZPos, orbitb.theta, orbitb.phi, orbitb.rho, detGeo.BfieldSign); }
double GetYPos(double ZPos){ return TMath::IsNaN(ZPos) ? TMath::QuietNaN() : YPos( ZPos, orbitb.theta, orbitb.phi, orbitb.rho, detGeo.BfieldSign); }
double GetR(double ZPos) { return TMath::IsNaN(ZPos) ? TMath::QuietNaN() : RPos( ZPos, orbitb.theta, orbitb.phi, orbitb.rho, detGeo.BfieldSign); }
double GetRecoilEnergy(){return eB;}
double GetRecoilXPos(double ZPos){ return TMath::IsNaN(ZPos) ? TMath::QuietNaN() : XPos( ZPos, orbitB.theta, orbitB.phi, orbitB.rho, detGeo.BfieldSign); }
double GetRecoilYPos(double ZPos){ return TMath::IsNaN(ZPos) ? TMath::QuietNaN() : YPos( ZPos, orbitB.theta, orbitB.phi, orbitB.rho, detGeo.BfieldSign); }
double GetRecoilR(double ZPos) { return TMath::IsNaN(ZPos) ? TMath::QuietNaN() : RPos( ZPos, orbitB.theta, orbitB.phi, orbitB.rho, detGeo.BfieldSign); }
void PrintGeometry() const;
double GetBField() const {return detGeo.Bfield;}
double GetDetRadius() const {return array.detPerpDist;}
trajectory GetTrajectory_b() const {return orbitb;}
trajectory GetTrajectory_B() const {return orbitB;}
DetGeo GetDetectorGeometry() const {return detGeo;}
Array GetArrayGeometry() const {return array;}
Auxillary GetAuxGeometry() const {return aux;}
TString GetHitMessage() {return hitMessage;}
TString GetAcceptanceMessage() { AcceptanceCodeToMsg(acceptanceCode); return acceptanceMsg;}
TString AcceptanceCodeToMsg(short code );
private:
DetGeo detGeo;
Array array;
Auxillary aux;
trajectory orbitb, orbitB;
double e,detX ; ///energy of light recoil, position X
double rhoHit; /// radius of particle-b hit on recoil detector
double eB; ///energy of heavy recoil
bool isDetReady;
TString hitMessage;
TString acceptanceMsg; //acceptance check
short acceptanceCode;
double xOff, yOff; // beam position
bool overrideDetDistance;
bool overrideFirstPos;
bool isCoincidentWithRecoil;
const double c = 299.792458; //mm/ns
void Clear();
};
HELIOS::HELIOS(){
Clear();
}
HELIOS::HELIOS(std::string detGeoFile, unsigned short ID){
Clear();
SetDetectorGeometry(detGeoFile, ID);
}
HELIOS::~HELIOS(){
}
void HELIOS::Clear(){
orbitb.Clear();
orbitB.Clear();
e = TMath::QuietNaN();
eB = TMath::QuietNaN();
detX = TMath::QuietNaN();
rhoHit = TMath::QuietNaN();
xOff = 0.0;
yOff = 0.0;
isDetReady = false;
hitMessage = "";
acceptanceMsg = "";
acceptanceCode = 0;
overrideDetDistance = false;
overrideFirstPos = false;
isCoincidentWithRecoil = false;
}
void HELIOS::OverrideMagneticField(double BField){
this->detGeo.Bfield = BField;
this->detGeo.BfieldSign = BField > 0 ? 1: -1;
}
void HELIOS::OverrideFirstPos(double firstPos){
overrideFirstPos = true;
printf("------ Overriding FirstPosition to : %8.2f mm \n", firstPos);
this->array.firstPos = firstPos;
}
void HELIOS::OverrideDetectorDistance(double perpDist){
overrideDetDistance = true;
printf("------ Overriding Detector Distance to : %8.2f mm \n", perpDist);
this->array.detPerpDist = perpDist;
}
void HELIOS::OverrideDetectorFacing(bool isOutside){
this->array.detFaceOut = isOutside;
printf(" Detectors are facing %s\n", array.detFaceOut ? "outside": "inside" );
}
bool HELIOS::SetDetectorGeometry(std::string filename, unsigned short ID){
if( detGeo.LoadDetectorGeo(filename, false)) {
array = detGeo.array[ID];
aux = detGeo.aux[ID];
isCoincidentWithRecoil = detGeo.aux[ID].isCoincident;
isDetReady = true;
}else{
printf("cannot read file %s.\n", filename.c_str());
isDetReady = false;
}
return isDetReady;
}
void HELIOS::PrintGeometry() const{
printf("=====================================================\n");
printf(" B-field : %8.2f T, %s\n", detGeo.Bfield, detGeo.Bfield > 0 ? "out of plan" : "into plan");
printf(" Bore : %8.2f mm\n", detGeo.bore);
printf("----------------------------------- Detector Position \n");
array.Print();
aux.Print();
printf("=====================================================\n");
}
TString HELIOS::AcceptanceCodeToMsg(short code ){
switch(code){
case 3 : acceptanceMsg = "try one more loop"; break;
case 2 : acceptanceMsg = "hit less than the nearest array. increase loop"; break;
case 1 : acceptanceMsg = "GOOD!! hit Array"; break;
case 0 : acceptanceMsg = "detector geometry incomplete."; break;
case -1 : acceptanceMsg = "array at upstream, z is downstream."; break;
case -2 : acceptanceMsg = "array at downstream, z is upstream."; break;
case -3 : acceptanceMsg = "hit at the XY gap."; break;
case -4 : acceptanceMsg = "hit more upstream than the array length"; break;
case -5 : acceptanceMsg = "hit more downstream than the array length"; break;
case -6 : acceptanceMsg = "hit blocker"; break;
case -7 : acceptanceMsg = "hit array Z-gap"; break;
case -10 : acceptanceMsg = "rho is too big"; break;
case -11 : acceptanceMsg = "rho is too small"; break;
case -12 : acceptanceMsg = "light recoil blocked by recoil detector"; break;
case -13 : acceptanceMsg = "more than 3 loops."; break;
case -14 : acceptanceMsg = "heavy recoil does not hit recoil detector"; break;
case -15 : acceptanceMsg = "det Row ID == -1"; break;
default : acceptanceMsg = "unknown error."; break;
}
return acceptanceMsg;
}
int HELIOS::CheckDetAcceptance(){
//CalArrayHit and CalRecoilHit must be done before.
if( isDetReady == false ) { acceptanceCode = 0; return acceptanceCode; }
// -1 ========= when recoil direction is not same side of array
if( array.firstPos < 0 && orbitb.z > 0 ) {acceptanceCode = -1; return acceptanceCode;}
// -2 ========= when recoil direction is not same side of array
if( array.firstPos > 0 && orbitb.z < 0 ) {acceptanceCode = -2; return acceptanceCode;}
// -11 ======== rho is too small
if( 2 * orbitb.rho < array.detPerpDist ) { acceptanceCode = -11; return acceptanceCode;}
// -15 ========= if detRowID == -1, should be (2 * orbitb.rho < perpDist)
if( orbitb.detRowID == -1 ) {acceptanceCode = -15; return acceptanceCode;}
// -10 =========== when rho is too big .
if( array.detFaceOut && detGeo.bore < 2 * orbitb.rho) { acceptanceCode = -10; return acceptanceCode;}
// -14 ========== check particle-B hit radius on recoil dectector
if( isCoincidentWithRecoil && orbitB.R > aux.outerRadius ) {acceptanceCode = -14; return acceptanceCode;}
//if( isCoincidentWithRecoil && (orbitB.R > rhoRecoilout || orbitB.R < rhoRecoilin) ) return -14;
// -12 ========= check is particle-b was blocked by recoil detector
rhoHit = GetR(aux.detPos);
if( orbitb.z > 0 && aux.detPos > 0 && orbitb.z > aux.detPos && rhoHit < aux.outerRadius ) { acceptanceCode = -12; return acceptanceCode;}
if( orbitb.z < 0 && aux.detPos < 0 && orbitb.z < aux.detPos && rhoHit < aux.outerRadius ) { acceptanceCode = -12; return acceptanceCode;}
// -13 ========= not more than 3 loops
if( orbitb.loop > 3 ) {acceptanceCode = -13; return acceptanceCode;}
// -3 ========= calculate the "y"-distance from detector center
if( sqrt(orbitb.R*orbitb.R - array.detPerpDist * array.detPerpDist)> array.detWidth/2 ) { acceptanceCode = -3; return acceptanceCode;}
// -4, -5 ==== when zPos further the range of whole array, more loop would not save
if( array.firstPos < 0 && orbitb.z < array.detPos[0] - array.detLength ) { acceptanceCode = -4; return acceptanceCode;}
if( array.firstPos > 0 && orbitb.z > array.detPos[array.colDet-1] + array.detLength ) { acceptanceCode = -5; return acceptanceCode;}
// -6 ======== Hit on blacker
if( array.blocker != 0 && array.firstPos > 0 && array.detPos[0] - array.blocker < orbitb.z && orbitb.z < array.detPos[0] ) {acceptanceCode = -6; return acceptanceCode;}
if( array.blocker != 0 && array.firstPos < 0 && array.detPos[array.colDet-1] < orbitb.z && orbitb.z < array.detPos[array.colDet-1] + array.blocker ) { acceptanceCode = -6; return acceptanceCode;}
// 2 ====== when zPos less then the nearest position, more loop may hit
int increaseLoopFlag = 0;
if( array.firstPos < 0 && array.detPos[array.colDet-1] < orbitb.z ) increaseLoopFlag = 2;
if( array.firstPos > 0 && array.detPos[0] > orbitb.z ) increaseLoopFlag = 2;
if (increaseLoopFlag == 2 ) {
orbitb.z += orbitb.z0;
orbitb.effLoop += 1.0;
orbitb.loop += 1;
orbitb.t = orbitb.t0 * orbitb.effLoop;
acceptanceCode = 2;
return acceptanceCode;
}
// 1 ======= check hit array z- position
if( array.firstPos < 0 ){
for( int i = 0; i < array.colDet; i++){
if( array.detPos[i] - array.detLength <= orbitb.z && orbitb.z <= array.detPos[i]) {
orbitb.detID = i;
detX = ( orbitb.z - (array.detPos[i] + array.detLength/2 ))/ array.detLength * 2 ;// range from -1 , 1
acceptanceCode = 1;
return acceptanceCode;
}
}
}else{
for( int i = 0; i < array.colDet ; i++){
if( array.detPos[i] <= orbitb.z && orbitb.z <= array.detPos[i] + array.detLength) {
///printf(" %d | %f < z = %f < %f \n", i, array.detPos[i], orbitb.z, array.detPos[i]+length);
orbitb.detID = i;
detX = ( orbitb.z - (array.detPos[i] - array.detLength/2 ))/ array.detLength*2 ;// range from -1 , 1
acceptanceCode = 1;
return acceptanceCode;
}
}
}
// -7 ======== check hit array gap
if( array.firstPos < 0 ){
for( int i = 0; i < array.colDet-1 ; i++){
if( array.detPos[i] < orbitb.z && orbitb.z < array.detPos[i+1] - array.detLength ) { acceptanceCode = -7; return acceptanceCode; }//increaseLoopFlag = 3;
}
}else{
for( int i = 0; i < array.colDet-1 ; i++){
if( array.detPos[i] + array.detLength < orbitb.z && orbitb.z < array.detPos[i+1] ) { acceptanceCode = -7; return acceptanceCode; }//increaseLoopFlag = 3;
}
}
if (increaseLoopFlag == 3 ) {
orbitb.z += orbitb.z0;
orbitb.effLoop += 1.0;
orbitb.loop += 1;
orbitb.t = orbitb.t0 * orbitb.effLoop;
acceptanceCode = 3;
return acceptanceCode;
}
acceptanceCode = -20 ;
return acceptanceCode; // for unknown reason
}
void HELIOS::CalTrajectoryPara(TLorentzVector P, bool isLightRecoil){
if( isLightRecoil ){
orbitb.theta = P.Theta();
orbitb.phi = P.Phi();
orbitb.rho = P.Pt() / abs(detGeo.Bfield) / P.GetUniqueID() / c * 1000; //mm
orbitb.vt = P.Beta() * TMath::Sin(P.Theta()) * c ; // mm / nano-second
orbitb.vp = P.Beta() * TMath::Cos(P.Theta()) * c ; // mm / nano-second
orbitb.t0 = TMath::TwoPi() * orbitb.rho / orbitb.vt; // nano-second
orbitb.z0 = orbitb.vp * orbitb.t0;
orbitb.detID = -1;
orbitb.detRowID = -1;
}else{
orbitB.theta = P.Theta();
orbitB.phi = P.Phi();
orbitB.rho = P.Pt() / abs(detGeo.Bfield) / P.GetUniqueID() / c * 1000; //mm
orbitB.vt = P.Beta() * TMath::Sin(P.Theta()) * c ; // mm / nano-second
orbitB.vp = P.Beta() * TMath::Cos(P.Theta()) * c ; // mm / nano-second
orbitB.t0 = TMath::TwoPi() * orbitB.rho / orbitB.vt; // nano-second
orbitB.z0 = orbitB.vp * orbitB.t0;
orbitB.detID = -1;
orbitB.detRowID = -1;
}
}
int HELIOS::CalArrayHit(TLorentzVector Pb, bool debug){
e = Pb.E() - Pb.M();
detX = TMath::QuietNaN();
rhoHit = TMath::QuietNaN();
CalTrajectoryPara(Pb, true);
int targetLoop = 1;
int inOut = array.detFaceOut == true ? 1: 0; //1 = from Outside, 0 = from inside
if( debug ) {
printf("===================================\n");
printf("theta : %f deg, phi : %f deg \n", orbitb.theta * TMath::RadToDeg(), orbitb.phi * TMath::RadToDeg());
printf("z0: %f mm, rho : %f mm \n", orbitb.z0, orbitb.rho);
printf(" inOut : %d = %s \n", inOut, inOut == 1 ? "Out" : "in");
printf(" z range : %.2f - %.2f \n", detGeo.zMin, detGeo.zMax);
printf(" B-field sign : %d\n", detGeo.BfieldSign);
printf("-----------------------------------\n");
}
std::vector<double> zPossible;
std::vector<int> dID; //detRowID
int iStart = ( detGeo.BfieldSign == 1 ? 0 : -array.rowDet );
int iEnd = ( detGeo.BfieldSign == 1 ? 2 * array.rowDet : array.rowDet );
for( int i = iStart; i < iEnd ; i++){
double phiD = TMath::TwoPi()/array.rowDet * i ;
double dphi = orbitb.phi - phiD;
double aEff = array.detPerpDist - (xOff * TMath::Cos(phiD) + yOff * TMath::Sin(phiD));
double hahaha = asin( aEff/ orbitb.rho - detGeo.BfieldSign * sin(dphi));
int n = 2*targetLoop + inOut;
double zP = orbitb.z0 /TMath::TwoPi() * ( detGeo.BfieldSign * dphi + n * TMath::Pi() + pow(-1, n) * hahaha );
if( debug ) {
double xP = GetXPos(zP) ;
double yP = GetYPos(zP) ;
printf("phiD: %4.0f, dphi: %6.1f, mod(pi): %6.1f, Loop : %9.5f, zHit : %8.3f mm, (x,y) = (%7.2f, %7.2f) \n",
phiD * TMath::RadToDeg(),
(orbitb.phi-phiD) * TMath::RadToDeg(),
fmod(orbitb.phi-phiD, TMath::Pi())*TMath::RadToDeg(),
zP/orbitb.z0, zP, xP, yP );
}
///Selection
if( !TMath::IsNaN(zP) && 0 < zP/orbitb.z0 && TMath::Max(0, targetLoop-1) < zP/orbitb.z0 && zP/orbitb.z0 < targetLoop ) {
zPossible.push_back(zP);
dID.push_back(i);
}
}
if( debug ) printf("-----------------------------------\n");
double dMin = 1;
for( int i = 0; i < (int) zPossible.size(); i++){
double dd = abs(zPossible[i]/orbitb.z0 - (targetLoop - (1-inOut)));
if( debug ) printf(" %d | zP : %8.3f mm; loop : %9.5f ", i, zPossible[i], zPossible[i]/orbitb.z0);
if( dd < dMin) {
orbitb.z = zPossible[i];
dMin = dd;
orbitb.effLoop = zPossible[i]/orbitb.z0;
orbitb.loop = TMath::Ceil(orbitb.effLoop);
orbitb.detRowID = (12+dID[i])%4;
orbitb.t = orbitb.t0 * orbitb.effLoop;
double phiD = TMath::TwoPi()/array.rowDet * dID[i] ;
double dphi = orbitb.phi - phiD ;
if( debug ) {
// Check is in or out
double hitDir = cos( orbitb.z/orbitb.z0 * TMath::TwoPi() - detGeo.BfieldSign * dphi );
printf(" hitDir : %4.1f ", hitDir);
if( ( inOut == 1 && hitDir > 0 ) || (inOut == 0 && hitDir < 0 ) ) {
printf(" != %f ", array.detPerpDist);
orbitb.z = TMath::QuietNaN();
orbitb.loop = -1;
orbitb.detRowID = -1;
hitMessage = "wrong direction.";
return - 2;
}
// this must be false, otherwise, calculation error
double xPos = GetXPos(orbitb.z ) ;
double yPos = GetYPos(orbitb.z ) ;
double a = xPos * cos(phiD) + yPos * sin(phiD);
printf(" a : %f ", a);
if( abs(a - array.detPerpDist) > 0.01) {
printf(" != %f ", array.detPerpDist);
orbitb.z = TMath::QuietNaN();
orbitb.loop = -1;
orbitb.detRowID = -1;
hitMessage = "not on the detector plan.";
return -3;
}
}
}
if(debug) printf("\n");
}
// calculate x, y, R
orbitb.x = GetXPos(orbitb.z) ;
orbitb.y = GetYPos(orbitb.z) ;
orbitb.R = GetR(orbitb.z);
hitMessage = "successful hit.";
return 1; // return 1 when OK
}
int HELIOS::CalRecoilHit(TLorentzVector PB){
CalTrajectoryPara(PB, false);
orbitB.z = aux.detPos;
orbitB.x = GetRecoilXPos(aux.detPos) ;
orbitB.y = GetRecoilYPos(aux.detPos) ;
orbitB.R = GetRecoilR(aux.detPos);
orbitB.effLoop = orbitB.z/orbitB.z0;
orbitB.t = orbitB.t0 * orbitB.effLoop ;
return 1;
}
#endif

301
Cleopatra/ClassKnockout.h
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@ -1,301 +0,0 @@
#ifndef knockout_h
#define knockout_h
//=======================================================
//#######################################################
// Class for Knockout Reaction
// A(a,12)B, A = B + b, a->1, b->2
// incident particle is A
// the calculation: 1) go to A's rest frame
// 2) calculate the b = A - B
// 3) go to CM frame
//=======================================================
class Knockout{
public:
Knockout();
~Knockout();
void SetA(int A, int Z){
Isotope temp(A,Z);
mA = temp.Mass;
AA = A;
ZA = Z;
nameA = temp.Name;
}
void SetExA(double Ex){
this->ExA = Ex;
}
void Seta(int A, int Z){
Isotope temp(A,Z);
ma = temp.Mass;
Aa = A;
Za = Z;
m1 = ma;
A1 = A;
Z1 = Z;
namea = temp.Name;
name1 = temp.Name;
}
void Set2(int A, int Z){
Isotope temp(A,Z);
m2 = temp.Mass;
A2 = A;
Z2 = Z;
name2 = temp.Name;
AB = AA + Aa - A1 - A2;
ZB = ZA + Za - Z1 - Z2;
Isotope temp2(AB,ZB);
mB0 = temp2.Mass;
nameB = temp2.Name;
}
void SetBSpk(double S, double kb, double thetab, double phib){
this->S = S;
AB = AA + Aa - A1 - A2;
ZB = ZA + Za - Z1 - Z2;
Isotope temp(AB,ZB);
mB0 = temp.Mass;
nameB = temp.Name;
this->kb = kb;
this->thetab = thetab;
this->phib = phib;
mB = mA + ExA - m2 + S;
ExB = mB - mB0;
if( ExB < 0 && !isOverRideExNegative ){
printf(" seperation energy is too small. \n");
}
}
void OverRideExNegative(bool YN){
isOverRideExNegative = YN;
}
TString GetReactionName(){
TString rName;
TString normInv;
if( isNormalKinematics ){
normInv = "Normal Kinematics";
}else{
normInv = "Inverse Kinematics";
}
rName.Form("%s(%s,%s%s)%s, %s", nameA.c_str(), namea.c_str(), name1.c_str(), name2.c_str(), nameB.c_str(), normInv.Data());
return rName;
}
void SetIncidentEnergyAngle(double KEA, double theta, double phi){
this->KEA = KEA;
this->thetaIN = theta;
this->phiIN = phi;
}
void CalIncidentChannel(bool isNormalKinematics);
void CalReactionConstant(bool isNormalKinematics);
void Event(double thetaCM, double phCM);
double GetMass_A(){return mA;}
double GetMass_a(){return ma;}
double GetMass_b(){return mb;}
double GetMass_B(){return mB;}
double GetMass_Bgs(){return mB0;}
double GetMass_1(){return m1;}
double GetMass_2(){return m2;}
TLorentzVector GetPA(){return PA;}
TLorentzVector GetPa(){return Pa;}
TLorentzVector GetPb(){return Pb;}
TLorentzVector GetPB(){return PB;}
TLorentzVector GetP1(){return P1;}
TLorentzVector GetP2(){return P2;}
double GetMomentumbNN(){return p;}
double GetReactionBeta(){return beta;}
double GetReactionGamma(){return gamma;}
double GetNNTotalEnergy(){return Etot;}
double GetNNTotalKE() {return Etot - mb - ma;}
double GetQValue() {return mA + ExA - m2 - mB;}
double GetMaxExB() {return Etot - mb - mB0;}
private:
int AA, Aa, A1, A2, AB;
int ZA, Za, Z1, Z2, ZB;
double mA, ma, m1, m2, mB, mB0, mb;
string nameA, namea, name1, name2, nameB;
double S; // separation energy
double kb; // momentum of b
double thetab, phib;// direction of b
TLorentzVector PA, Pa, P1, P2, PB, Pb; // lab
double KEA, thetaIN, phiIN;
double T;
double k, beta, gamma, Etot, p; // reaction constant, in NN frame
double ExA, ExB;
bool isNormalKinematics;
bool isOverRideExNegative;
};
Knockout::Knockout(){
TLorentzVector temp(0,0,0,0);
PA = temp;
Pa = temp;
P1 = temp;
P2 = temp;
PB = temp;
Pb = temp;
SetA(12,6);
Seta(1,1);
Set2(1,1);
SetBSpk(1000, 0, 0, 0);
SetIncidentEnergyAngle(10, 0, 0);
ExA = 0;
isNormalKinematics = false;
isOverRideExNegative = false;
}
Knockout::~Knockout(){
}
void Knockout::CalIncidentChannel(bool isNormalKinematics){
if( ExB < 0 && !isOverRideExNegative) return;
this->isNormalKinematics = isNormalKinematics;
if(!isNormalKinematics){
//===== construct Lab frame 4-momentum
this->T = KEA * AA;
double kA = TMath::Sqrt(TMath::Power(mA + ExA + T, 2) - (mA + ExA) * (mA + ExA));
PA.SetXYZM(0, 0, kA, mA + ExA);
PA.RotateY(thetaIN);
PA.RotateZ(phiIN);
Pa.SetXYZM(0,0,0,ma);
}else{
//===== construct 4-momentum
this->T = KEA * Aa;
double ka = TMath::Sqrt(TMath::Power(ma + T, 2) - (ma) * (ma));
Pa.SetXYZM(0, 0, ka, ma);
Pa.RotateY(thetaIN);
Pa.RotateZ(phiIN);
PA.SetXYZM(0, 0, 0, mA + ExA);
}
}
void Knockout::CalReactionConstant(bool isNormalKinematics){
if( ExB < 0 && !isOverRideExNegative) return;
this->isNormalKinematics = isNormalKinematics;
CalIncidentChannel(isNormalKinematics);
if(!isNormalKinematics){
//===== change to A's rest frame
TVector3 bA = PA.BoostVector();
PA.Boost(-bA);
//===== constructe bounded nucleus b
PB.SetXYZM(0, 0, -kb, mB);
PB.RotateY(thetab);
PB.RotateZ(phib);
Pb = PA - PB;
mb = Pb.M();
//===== change to Lab frame
Pb.Boost(bA);
PA.Boost(bA);
PB.Boost(bA);
}else{
//===== constructe bounded nucleus b
PB.SetXYZM(0, 0, -kb, mB);
PB.RotateY(thetab);
PB.RotateZ(phib);
Pb = PA - PB;
mb = Pb.M();
}
//====== reaction constant
k = (Pa+Pb).P();
double E = (Pa+Pb).E();
beta = (Pa+Pb).Beta();
gamma = 1 / TMath::Sqrt(1- beta * beta);
Etot = TMath::Sqrt(TMath::Power(E,2) - k * k);
p = TMath::Sqrt( (Etot*Etot - TMath::Power(m1 + m2,2)) * (Etot*Etot - TMath::Power(m1 - m2 ,2)) ) / 2 / Etot;
//if( TMath::IsNaN(p) ){
// printf(" Mc: %f, m1+m2: %f, kb:%f, thetab:%f, phib:%f\n", Etot, m1+m2, kb, thetab, phib);
//}
}
void Knockout::Event(double thetaCM, double phiCM){
if( ExB < 0 && !isOverRideExNegative ) return;
//===== construct Pcm
TLorentzVector Pc = Pb + Pa;
TVector3 bc = Pc.BoostVector();
TLorentzVector Pac = Pa;
Pac.Boost(-bc);
TVector3 va = Pac.Vect();
TLorentzVector Pbc = Pb;
Pbc.Boost(-bc);
TVector3 vb = Pbc.Vect();
//--- from P1
TVector3 v1 = va;
v1.SetMag(p);
TVector3 u1 = va.Orthogonal();
v1.Rotate(thetaCM, u1);
v1.Rotate(phiCM + TMath::PiOver2(), va); // somehow, the calculation turn the vector 90 degree.
TLorentzVector P1c;
P1c.SetVectM(v1, m1);
//--- from P2
TLorentzVector P2c;
P2c.SetVectM(-v1, m2);
//---- to Lab Frame
P1 = P1c;
P1.Boost(bc);
P2 = P2c;
P2.Boost(bc);
}
#endif

502
Cleopatra/ClassSimPlotter.h
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@ -1,502 +0,0 @@
#ifndef SimPlotter_h
#define SimPlotter_h
#include <TTree.h>
#include <TH2F.h>
#include <TH1F.h>
#include <TString.h>
#include <TCanvas.h>
#include <TArc.h>
#include <TLegend.h>
#include <TLine.h>
#include <TLatex.h>
#include "../Armory/ClassDetGeo.h"
#include "../Armory/ClassReactionConfig.h"
#include "../Cleopatra/ClassIsotope.h"
enum plotID { pEZ, /// 0
pRecoilXY, /// 1
pRecoilXY1, /// 2
pRecoilXY2, /// 3
pRecoilRZ, /// 4
pRecoilRTR, /// 5
pTDiffZ, /// 6
pThetaCM, /// 7
pThetaCM_Z, /// 8
pExCal, /// 9
pRecoilRThetaCM, /// 10
pArrayXY, /// 11
pInfo, /// 12
pElum1XY, /// 13
pEElum1R, /// 14
pElum1RThetaCM, /// 15
pEmpty }; /// 16
class Plotter{
public:
Plotter(TTree * tree, short reactionID, std::string reactionName, DetGeo detGeo, ExcitedEnergies exList, TString gate, std::vector<plotID> padPlotID);
~Plotter();
void SetRanges(double zMin, double zMax, double eMax, double elumMax, double thetaCM_Max){
this->zRange[0] = zMin;
this->zRange[1] = zMax;
this->eMax = eMax;
this->elumMax = elumMax;
this->thetaCM_Max = thetaCM_Max;
}
void SetCanvas( int colSize, int rowSize , int padSize, std::vector<plotID> padPlotID ){
cCheck = new TCanvas(Form("SimChecker-%d", rID),
"Simulation Checker",
200 * rID,
200 * rID,
padSize*colSize,
padSize*rowSize);
if(cCheck->GetShowEditor() ) cCheck->ToggleEditor();
if(cCheck->GetShowToolBar() )cCheck->ToggleToolBar();
cCheck->Divide(colSize,rowSize);
numPad = colSize * rowSize;
}
void Plot();
private:
TTree * tree;
DetGeo detGeo;
std::string reactionName;
short rID;
ExcitedEnergies exList;
int numEx;
TString gate;
TString gateTrue;
std::vector<plotID> padPlotID;
double zRange[2];
double eMax;
double recoilOut;
double recoilIn;
double elumMax;
double thetaCM_Max;
int numPad;
TCanvas * cCheck;
TH2F * hez;
TH2F * hArrayXY;
TH2F * heavyXY;
TH2F * hElum1XY;
TH1F ** hThetaCM;
TH1F * hExCal;
TH1F * hHit;
TH2F * hRecoilXY1;
TH2F * hRecoilXY2;
TH2F * hTDiffZ;
TH2F * hRecoilRThetaCM;
TH2F * hRecoilRZ;
TH2F * hEElum1Rho;
TH2F * hRecoilRTR;
TH2F * hElum1RThetaCM;
TH2F * hThetaCM_Z;
Isotope heavy;
std::vector<double> FindRange(TString branch);
};
Plotter::Plotter(TTree * tree, short reactionID, std::string reactionName, DetGeo detGeo, ExcitedEnergies exList, TString gate, std::vector<plotID> padPlotID){
this->tree = tree;
this->rID = reactionID;
this->reactionName = reactionName;
this->exList = exList;
numEx = this->exList.ExList.size();
this->detGeo = detGeo;
this->recoilOut = detGeo.aux[rID].outerRadius;
this->recoilIn = detGeo.aux[rID].innerRadius;
this->gate = gate;
this->gateTrue = gate + Form(" && rID == %d", rID);
this->padPlotID = padPlotID;
cCheck = nullptr;
hez = nullptr;
hArrayXY = nullptr;
heavyXY = nullptr;
hElum1XY = nullptr;
hThetaCM = nullptr;
hExCal = nullptr;
hHit = nullptr;
hRecoilXY1 = nullptr;
hRecoilXY2 = nullptr;
hTDiffZ = nullptr;
hRecoilRThetaCM = nullptr;
hRecoilRZ = nullptr;
hEElum1Rho = nullptr;
hRecoilRTR = nullptr;
hElum1RThetaCM = nullptr;
hThetaCM_Z = nullptr;
std::size_t pos1 = reactionName.find(")") + 1;
std::size_t pos2 = reactionName.find(" ", pos1);
std::string result = reactionName.substr(pos1, pos2 - pos1);
pos1 = result.find("{") + 1;
pos2 = result.find("}", pos1);
std::string massHeavy = result.substr(pos1, pos2-pos1);
std::string symHeavy = result.substr(pos2+1);
heavy.SetIsoByName(massHeavy + symHeavy);
}
Plotter::~Plotter(){
if( cCheck ) delete cCheck;
if( hez ) delete hez;
if( hArrayXY ) delete hArrayXY;
if( heavyXY ) delete heavyXY;
if( hElum1XY ) delete hElum1XY;
if( hExCal ) delete hExCal;
if( hRecoilXY1 ) delete hRecoilXY1;
if( hRecoilXY2 ) delete hRecoilXY2;
if( hTDiffZ ) delete hTDiffZ;
if( hRecoilRThetaCM ) delete hRecoilRThetaCM;
if( hRecoilRZ ) delete hRecoilRZ;
if( hEElum1Rho ) delete hEElum1Rho;
if( hRecoilRTR ) delete hRecoilRTR;
if( hElum1RThetaCM ) delete hElum1RThetaCM;
if( hThetaCM_Z ) delete hThetaCM_Z;
if(hThetaCM ){
for( int i = 0; i < numEx; i++) delete [] hThetaCM[i];
delete [] hThetaCM;
}
}
inline void Plotter::Plot(){
for( int i = 1; i <= numPad; i++ ){
cCheck->cd(i);
plotID pID = padPlotID[i-1];
//&======================================= 0
if( pID == pEZ){
hez = new TH2F(Form("hez%d",rID), //need unqie name in root.
Form("e-z [gated] @ %5.0f mm; z [mm]; e [MeV]", detGeo.array[rID].firstPos),
400, zRange[0], zRange[1],
400, 0, eMax);
tree->Draw(Form("e:z>>hez%d", rID), gateTrue , "colz");
}
//&======================================= 1
if( pID == pRecoilXY ){
heavyXY = new TH2F(Form("heavyXY%d",rID),
Form("RecoilXY [gated] @ %4.0f mm; X [mm]; Y [mm]", detGeo.aux[rID].detPos ),
400, -recoilOut, recoilOut,
400, -recoilOut, recoilOut);
tree->Draw(Form("yRecoil:xRecoil>>heavyXY%d", rID), gateTrue, "colz");
// printf("%f, %f\n", recoilOut, recoilIn);
TArc * detArc1 = new TArc(0, 0, recoilOut);
detArc1->SetLineColor(kBlue-8);
detArc1->SetFillStyle(0);
detArc1->Draw("same");
TArc * detArc2 = new TArc(0, 0, recoilIn);
detArc2->SetLineColor(kBlue-8);
detArc2->SetFillStyle(0);
detArc2->Draw("same");
// if( reactionConfig.beamX != 0. || reactionConfig.beamY != 0. ){
// TArc * arc = new TArc(reactionConfig.beamX, reactionConfig.beamY, 1);
// arc->SetLineColor(2);
// detArc1->SetFillStyle(0);
// arc->Draw("same");
// }
}
//&======================================= 2
if( pID == pThetaCM ){
hThetaCM = new TH1F *[numEx];
TLegend * legend = new TLegend(0.8,0.2,0.99,0.8);
double maxCount = 0;
for( int h = 0; h < numEx; h++){
hThetaCM[h] = new TH1F(Form("hThetaCM%d-%d", rID, h), Form("thetaCM [gated] (ExID=%d); thetaCM [deg]; count", h), 200, 0, thetaCM_Max);
hThetaCM[h]->SetLineColor(h+1);
hThetaCM[h]->SetFillColor(h+1);
hThetaCM[h]->SetFillStyle(3000+h);
tree->Draw(Form("thetaCM>>hThetaCM%d-%d", rID, h), gateTrue + Form("&& ExID==%d", h), "");
legend->AddEntry(hThetaCM[h], Form("Ex=%5.1f MeV", exList.ExList[h].Ex));
double max = hThetaCM[h]->GetMaximum();
if( max > maxCount ) maxCount = max;
}
for( int h = 0; h < numEx; h++){
hThetaCM[h]->GetYaxis()->SetRangeUser(1, maxCount * 1.2);
if( h == 0 ) {
hThetaCM[h]->Draw();
}else{
hThetaCM[h]->Draw("same");
}
}
legend->Draw();
}
//&======================================= 3
if( pID == pExCal ){
double exMin = 9999;
double exMax = -1;
for( size_t k = 0 ; k < exList.ExList.size(); k++){
double kuku = exList.ExList[k].Ex;
if( kuku > exMax ) exMax = kuku;
if( kuku < exMin ) exMin = kuku;
}
double exPadding = (exMax - exMin) < 1 ? 1 : (exMax - exMin) * 0.3;
exMin = exMin - exPadding ;
exMax = exMax + exPadding ;
hExCal = new TH1F(Form("hExCal%d",rID),
Form("calculated Ex [gated]; Ex [MeV]; count / %.2f keV", (exMax-exMin)/400.*1000),
400, exMin, exMax);
tree->Draw(Form("ExCal>>hExCal%d", rID), gateTrue, "");
double Sn = heavy.CalSp(0,1);
double Sp = heavy.CalSp(1,0);
double Sa = heavy.CalSp2(4,2);
double S2n = heavy.CalSp(0, 2);
printf("======= Heavy recoil: %s \n", heavy.Name.c_str());
printf("Sn : %6.2f MeV/u \n", Sn);
printf("Sp : %6.2f MeV/u \n", Sp);
printf("Sa : %6.2f MeV/u \n", Sa);
printf("S2n : %6.2f MeV/u \n", S2n);
double yMax = hExCal->GetMaximum();
TLatex * text = new TLatex();
text->SetTextFont(82);
text->SetTextSize(0.06);
if( Sn < exMax ) {TLine * lineSn = new TLine(Sn, 0, Sn, yMax); lineSn->SetLineColor(2); lineSn->Draw(""); text->SetTextColor(2); text->DrawLatex(Sn, yMax*0.9, "S_{n}");}
if( Sp < exMax ) {TLine * lineSp = new TLine(Sp, 0, Sp, yMax); lineSp->SetLineColor(4); lineSp->Draw("same"); text->SetTextColor(4); text->DrawLatex(Sp, yMax*0.9, "S_{p}");}
if( Sa < exMax ) {TLine * lineSa = new TLine(Sa, 0, Sa, yMax); lineSa->SetLineColor(6); lineSa->Draw("same"); text->SetTextColor(6); text->DrawLatex(Sa, yMax*0.9, "S_{a}");}
if( S2n < exMax ) {TLine * lineS2n = new TLine(S2n, 0, S2n, yMax); lineS2n->SetLineColor(8); lineS2n->Draw("same"); text->SetTextColor(8); text->DrawLatex(S2n, yMax*0.9, "S_{2n}");}
}
//&======================================= 4
if( pID == pArrayXY ){
hArrayXY = new TH2F(Form("hArrayXY%d", rID),
"Array-XY [gated]; X [mm]; Y [mm]",
400, -detGeo.array[rID].detPerpDist*1.5, detGeo.array[rID].detPerpDist*1.5,
400, -detGeo.array[rID].detPerpDist*1.5, detGeo.array[rID].detPerpDist*1.5);
tree->Draw(Form("yArray:xArray>>hArrayXY%d", rID), gateTrue, "colz");
}
//&======================================= 5
if( pID == pInfo ){
TLatex text;
text.SetNDC();
text.SetTextFont(82);
text.SetTextSize(0.06);
text.SetTextColor(2);
text.DrawLatex(0., 0.9, reactionName.c_str());
text.DrawLatex(0., 0.8, detGeo.Bfield > 0 ? "out of plan" : "into plan");
text.SetTextColor(1);
text.DrawLatex(0., 0.7, "gate:");
text.SetTextColor(2);
//check gate text length, if > 30, break by "&&"
int ll = gate.Length();
if( ll > 30 ) {
std::vector<std::string> strList = AnalysisLib::SplitStr( (std::string) gate.Data(), "&&");
for( int i = 0; i < strList.size(); i++){
text.DrawLatex(0., 0.6 - 0.05*i, (TString) strList[i]);
}
}else{
text.DrawLatex(0., 0.6, gate);
}
// if( reactionConfig.beamX != 0.0 || reactionConfig.beamY != 0.0 ){
// text.DrawLatex(0.0, 0.1, Form("Bema pos: (%4.1f, %4.1f) mm", reactionConfig.beamX, reactionConfig.beamY));
// }
}
//&======================================= 6
if( pID == pElum1XY ){
hElum1XY = new TH2F(Form("hElum1XY%d", rID),
Form("Elum-1 XY [gated] @ %.0f mm ; X [mm]; Y [mm]", detGeo.aux[rID].elumPos1),
400, -elumMax, elumMax,
400, -elumMax, elumMax);
tree->Draw(Form("yElum1:xElum1>>hElum1XY%d", rID), gateTrue, "colz");
double count = hElum1XY->GetEntries();
if( count < 2000. ) {
hElum1XY->SetMarkerStyle(7);
if( count < 500. ) hElum1XY->SetMarkerStyle(3);
hElum1XY->Draw("scat");
}
}
//&======================================= 7
if( pID == pRecoilXY1 ){
TH2F * hRecoilXY1 = new TH2F(Form("hRecoilXY1-%d", rID),
Form("RecoilXY-1 [gated] @ %4.0f mm; X [mm]; Y [mm]", detGeo.aux[rID].detPos1 ),
400, -detGeo.aux[rID].outerRadius, detGeo.aux[rID].outerRadius,
400, -detGeo.aux[rID].outerRadius, detGeo.aux[rID].outerRadius);
tree->Draw(Form("yRecoil1:xRecoil1>>hRecoilXY1-%d", rID), gateTrue, "colz");
}
//&======================================= 8
if( pID == pRecoilXY2 ){
hRecoilXY2 = new TH2F(Form("hRecoilXY2=%d", rID),
Form("RecoilXY-2 [gated] @ %4.0f mm; X [mm]; Y [mm]", detGeo.aux[rID].detPos2 ),
400, -detGeo.aux[rID].outerRadius, detGeo.aux[rID].outerRadius,
400, -detGeo.aux[rID].outerRadius, detGeo.aux[rID].outerRadius);
tree->Draw(Form("yRecoil2:xRecoil2>>hRecoilXY2-%d", rID), gate, "colz");
}
//&======================================= 9
if( pID == pTDiffZ ){
std::vector<double> tDiffRange = FindRange("t-tB");
hTDiffZ = new TH2F(Form("hTDiffZ%d", rID),
"time(Array) - time(Recoil) vs Z [gated]; z [mm]; time diff [ns]",
400, zRange[0], zRange[1],
400, tDiffRange[0], tDiffRange[1]);
tree->Draw(Form("t - tB : z >> hTDiffZ%d", rID), gateTrue, "colz");
}
//&======================================= 10
if( pID == pRecoilRThetaCM ){
hRecoilRThetaCM = new TH2F(Form("hRecoilRThetaCM%d", rID),
"RecoilR - thetaCM [gated]; thetaCM [deg]; RecoilR [mm]",
400, 0, 60,
400, 0, detGeo.aux[rID].outerRadius);
tree->Draw(Form("rhoRecoil:thetaCM>>hRecoilRThetaCM%d", rID), gateTrue, "colz");
}
//&======================================= 11
if( pID == pRecoilRZ ){
hRecoilRZ = new TH2F(Form("hRecoilRZ%d", rID),
"RecoilR - Z [gated]; z [mm]; RecoilR [mm]",
400, zRange[0], zRange[1],
400,0, detGeo.aux[rID].outerRadius);
tree->Draw(Form("rhoRecoil:z>>hRecoilRZ%d", rID), gateTrue, "colz");
}
//&======================================= 12
if( pID == pEElum1R ){
hEElum1Rho = new TH2F(Form("hEElum1Rho%d", rID),
"Elum-1 E-R [gated]; R[mm]; Energy[MeV]",
400, 0, elumMax,
400, 0, eMax);
tree->Draw(Form("Tb:rhoElum1>>hEElum1Rho%d", rID), gateTrue, "colz");
}
//&======================================= 13
if( pID == pRecoilRTR ){
std::vector<double> recoilERange = FindRange("TB");
hRecoilRTR = new TH2F(Form("hRecoilRTR%d", rID),
"RecoilR - recoilE [gated]; recoil Energy [MeV]; RecoilR [mm]",
500, recoilERange[0], recoilERange[1],
500, 0, detGeo.aux[rID].outerRadius);
tree->Draw(Form("rhoRecoil:TB>>hRecoilRTR%d", rID), gateTrue, "colz");
}
//&======================================= 14
if( pID == pThetaCM_Z ){
hThetaCM_Z = new TH2F(Form("hThetaCM_Z%d", rID),
"ThetaCM vs Z ; Z [mm]; thetaCM [deg]",
400, zRange[0], zRange[1],
400, 0, thetaCM_Max);
tree->Draw(Form("thetaCM:z>>hThetaCM_Z%d", rID), gateTrue,"col");
}
//&======================================= 15
if( pID == pElum1RThetaCM){
int angBin = 400;
hElum1RThetaCM = new TH2F(Form("hElum1RThetaCM%d", rID),
"Elum-1 rho vs ThetaCM [gated]; thatCM [deg]; Elum- rho [mm]",
angBin, 0, thetaCM_Max,
400, 0, elumMax);
tree->Draw(Form("rhoElum1:thetaCM>>hElum1RThetaCM%d", rID), gateTrue, "colz");
TH1F * htemp = (TH1F *) hElum1RThetaCM->ProjectionX("htemp");
double rel = (thetaCM_Max)*1.0/angBin;
printf("angular resolution : %f deg \n", rel);
std::vector<double> xList;
double old_y = 0;
for( int i = 1; i <= angBin; i++){
double y = htemp->GetBinContent(i);
if( old_y == 0 && y > 0) xList.push_back(htemp->GetBinCenter(i));
if( old_y > 0 && y == 0 ) xList.push_back(htemp->GetBinCenter(i));
old_y = y;
}
printf("list of gaps :\n");
for( int i = 0; i < (int) xList.size(); i+=2){
printf("%d | %.3f - %.3f deg\n", i, xList[i], xList[i+1]);
}
TF1 f1("f1", "sin(x)");
double acceptance = 0;
double err1 = 0;
double err2 = 0;
for( int i = 0; i < (int) xList.size(); i += 2 ){
acceptance += f1.Integral(xList[i] * TMath::DegToRad(), xList[i+1] * TMath::DegToRad() ) * TMath::TwoPi();
err1 += f1.Integral((xList[i]-rel) * TMath::DegToRad(), (xList[i+1] + rel) * TMath::DegToRad() ) * TMath::TwoPi();
err2 += f1.Integral((xList[i]+rel) * TMath::DegToRad(), (xList[i+1] - rel) * TMath::DegToRad() ) * TMath::TwoPi();
}
printf("acceptance = %f sr +- %f \n", acceptance, (err1-err2)/2);
TLatex text;
text.SetTextFont(82);
text.SetTextSize(0.06);
text.SetTextColor(2);
text.SetTextAngle(90);
for( int i = 0; i < (int) xList.size(); i++){
text.DrawLatex(xList[i], elumMax/2, Form("%.2f", xList[i]));
}
text.SetNDC();
text.SetTextAngle(0);
text.DrawLatex(0.15, 0.15, Form("accp. = %.2f(%.2f) msr", acceptance * 1000., (err1-err2)*1000./2));
delete htemp;
}
}///===== end of pad loop
}
std::vector<double> Plotter::FindRange(TString branch){
tree->Draw(Form("%s>>temp1", branch.Data()), gateTrue);
TH1F * temp1 = (TH1F *) gROOT->FindObjectAny("temp1");
std::vector<double> output;
if( temp1 != nullptr){
output.push_back( temp1->GetXaxis()->GetXmax() );
output.push_back( temp1->GetXaxis()->GetXmin() );
delete temp1;
}
return output;
}
#endif

202
Cleopatra/ClassTargetScattering.h
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@ -1,202 +0,0 @@
#ifndef targetScattering_h
#define targetScattering_h
#include <vector>
#include <fstream>
#include <string>
#include "../Armory/AnalysisLib.h"
//=======================================================
//#######################################################
// Class for multi-scattering of the beam inside target
// using SRIM to generate stopping power
// input : TLorentzVector, data_files
// output : scattered TLorentzVector
//=======================================================
class TargetScattering{
public:
TargetScattering();
~TargetScattering();
double GetKE0(){return KE0;}
double GetKE() {return KE;}
double GetKELoss() {return KE0-KE;}
double GetDepth() {return depth;}
double GetPathLength() {return length;}
void LoadStoppingPower(std::string file);
void SetTarget(double density, double depth){
this->density = density;
this->depth = depth;
isTargetSet = true;
//printf("===== Target, density: %f g/cm3, depth: %f um \n", density, depth * 1e+4 );
}
TLorentzVector Scattering(TLorentzVector P){
double mass = P.M();
KE0 = (P.E() - mass);
KE = KE0;
double theta = P.Theta();
this->length = TMath::Abs(depth/TMath::Cos(theta));
//printf("------- theta: %f deg, length: %f um, KE: %f MeV \n", theta * TMath::RadToDeg(), this->length * 1e+4, KE);
//integrate the energy loss within the depth of A
double dx = length/100.; // in cm
double x = 0;
double densityUse = density;
if( unitID == 0 ) densityUse = 1.;
do{
//assume the particle will not be stopped
//printf(" x: %f, KE: %f, S: %f \n", x, KE, gA->Eval(KE));
KE = KE - densityUse * gA->Eval(KE) * 10 * dx ; // factor 10, convert MeV/cm -> MeV/cm
//angular Straggling, assume (Lateral Straggling)/(Projected range)
x = x + dx;
}while(x < length && KE > 0 );
//printf(" depth: %f cm = %f um, KE : %f -> %f MeV , dE = %f MeV \n", depth, depth * 1e+4, KE0, KE, KE0 - KE);
double newk = 0;
TLorentzVector Pnew;
TVector3 vb(0,0,0);
if( KE < 0 ) {
KE = 0.0; // somehow, when KE == 0 , the program has problem to rotate the 4-vector
}else{
newk = TMath::Sqrt(TMath::Power(mass+KE,2) - mass * mass);
vb = P.Vect();
vb.SetMag(newk);
}
Pnew.SetVectM(vb,mass);
return Pnew;
}
private:
bool isTargetSet;
double density; // density [mg/cm2]
int unitID; // 0 = MeV /mm or keV/um , 1 = MeV / (ug/cm2)
double depth; // depth in target [cm]
double length; // total path length in target [cm]
double KE0, KE;
TGraph * gA; // stopping power of A, b, B, in unit of MeV/(mg/cm2)
TGraph * gB; // projection range [nm]
TGraph * gC; // parallel Straggling [nm]
TGraph * gD; // perpendicular Straggling [nm]
};
inline TargetScattering::TargetScattering(){
isTargetSet = false;
density = 1; // mg/cm2
unitID = 0;
KE0 = 0;
KE = 0;
depth = 0;
length = 0;
gA = NULL;
gB = NULL;
gC = NULL;
gD = NULL;
}
inline TargetScattering::~TargetScattering(){
delete gA;
}
inline void TargetScattering::LoadStoppingPower(std::string filename){
printf("loading Stopping power: %s.", filename.c_str());
std::ifstream file;
file.open(filename.c_str());
std::vector<double> energy;
std::vector<double> stopping;
std::vector<double> projRange;
std::vector<double> paraStraggling;
std::vector<double> prepStraggling;
if( file.is_open() ){
printf("... OK\n");
char lineChar[16635];
std::string line;
while( !file.eof() ){
file.getline(lineChar, 16635, '\n');
line = lineChar;
size_t found = line.find("Target Density");
if( found != std::string::npos ){
printf(" %s\n", line.c_str());
}
found = line.find("Stopping Units =");
if( found != std::string::npos){
printf(" %s\n", line.c_str());
if( line.find("MeV / mm") != std::string::npos ) {
unitID = 0;
}else if( line.find("keV / micron") != std::string::npos ){
unitID = 0;
}else if( line.find("MeV / (mg/cm2)") != std::string::npos ) {
unitID = 1;
}else{
printf("please using MeV/mm, keV/um, or MeV/(mg/cm2) \n");
}
}
size_t foundkeV = line.find("keV ");
size_t foundMeV = line.find("MeV ");
size_t foundGeV = line.find("GeV ");
if ( foundkeV != std::string::npos || foundMeV != std::string::npos || foundGeV != std::string::npos ){
std::vector<std::string> haha = AnalysisLib::SplitStr(line, " ");
//for( int i = 0 ; i < (int) haha.size()-1; i++){
// printf("%d,%s|", i, haha[i].c_str());
//}
//printf("\n");
found = haha[0].find("keV"); if( found != std::string::npos ) energy.push_back(atof(haha[0].substr(0, found).c_str()) * 0.001);
found = haha[0].find("MeV"); if( found != std::string::npos ) energy.push_back(atof(haha[0].substr(0, found).c_str()) * 1.);
found = haha[0].find("GeV"); if( found != std::string::npos ) energy.push_back(atof(haha[0].substr(0, found).c_str()) * 1000.);
double a = atof(haha[1].c_str());
double b = atof(haha[2].c_str());
stopping.push_back(a+b);
found = haha[3].find("A") ; if( found != std::string::npos ) projRange.push_back(atof(haha[3].substr(0, found).c_str()) * 0.1);
found = haha[3].find("um"); if( found != std::string::npos ) projRange.push_back(atof(haha[3].substr(0, found).c_str()) * 1000.);
found = haha[3].find("mm"); if( found != std::string::npos ) projRange.push_back(atof(haha[3].substr(0, found).c_str()) * 1e6);
found = haha[4].find("A") ; if( found != std::string::npos ) paraStraggling.push_back(atof(haha[4].substr(0, found).c_str()) * 0.1);
found = haha[4].find("um"); if( found != std::string::npos ) paraStraggling.push_back(atof(haha[4].substr(0, found).c_str()) * 1e3);
found = haha[4].find("mm"); if( found != std::string::npos ) paraStraggling.push_back(atof(haha[4].substr(0, found).c_str()) * 1e6);
found = haha[5].find("A") ; if( found != std::string::npos ) prepStraggling.push_back(atof(haha[5].substr(0, found).c_str()) * 0.1);
found = haha[5].find("um"); if( found != std::string::npos ) prepStraggling.push_back(atof(haha[5].substr(0, found).c_str()) * 1e3);
found = haha[5].find("mm"); if( found != std::string::npos ) prepStraggling.push_back(atof(haha[5].substr(0, found).c_str()) * 1e6);
//printf(" %f, %f, %f, %f, %f \n", energy.back(), stopping.back(), projRange.back(), paraStraggling.back(), prepStraggling.back());
}
}
}else{
printf("... fail\n");
}
gA = new TGraph(energy.size(), &energy[0], &stopping[0]);
gB = new TGraph(energy.size(), &energy[0], &projRange[0]);
gC = new TGraph(energy.size(), &energy[0], &paraStraggling[0]);
gD = new TGraph(energy.size(), &energy[0], &prepStraggling[0]);
}
#endif

593
Cleopatra/ClassTransfer.h
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@ -1,593 +0,0 @@
#ifndef Transfer_h
#define Transfer_h
#include "utility"
#include "ClassIsotope.h"
#include "../Armory/AnalysisLib.h"
#include "../Armory/ClassReactionConfig.h"
#include "TLorentzVector.h"
#include "TMath.h"
#include "TF1.h"
#include "TMacro.h"
//=======================================================
//#######################################################
// Class for Transfer Reaction
// reaction notation A(a,b)B
// A = incident particle
// a = target
// b = light scattered particle
// B = heavy scattered particle
//=======================================================
class TransferReaction {
public:
TransferReaction(){Inititization();};
TransferReaction(ReactionConfig config, unsigned short ID = 0);
TransferReaction(std::string configFile, unsigned short ID = 0);
TransferReaction(TMacro configMarco, unsigned short ID = 0);
TransferReaction(int beamA, int beamZ,
int targetA, int targetZ,
int recoilA, int recoilZ, float beamEnergy_AMeV);
~TransferReaction();
void SetA(int A, int Z, double Ex = 0);
void Seta(int A, int Z);
void Setb(int A, int Z);
void SetB(int A, int Z);
void SetIncidentEnergyAngle(double KEA, double theta, double phi);
void SetReactionFromReactionConfigClass(ReactionConfig reactConfigClassObject, unsigned short ID = 0);
void SetReactionFromFile(std::string configFile, unsigned short ID = 0);
void SetReactionFromTMacro(TMacro configMacro, unsigned short ID = 0);
void SetReactionSimple(int beamA, int beamZ,
int targetA, int targetZ,
int recoilA, int recoilZ, float beamEnergy_AMeV);
void SetExA(double Ex);
void SetExB(double Ex);
TString GetReactionName() const;
TString GetReactionName_Latex();
ReactionConfig GetRectionConfig() { return config;}
Recoil GetRecoil() { return recoil;}
ExcitedEnergies * GetExList() { return &exList;}
double GetMass_A() const {return mA + ExA;}
double GetMass_a() const {return ma;}
double GetMass_b() const {return mb;}
double GetMass_B() const {return mB + ExB;}
double GetCMTotalKE() {return Etot - mA - ma;}
double GetQValue() {return mA + ExA + ma - mb - mB - ExB;}
double GetMaxExB() {return Etot - mb - mB;}
TLorentzVector GetPA() const {return PA;}
TLorentzVector GetPa() const {return Pa;}
TLorentzVector GetPb() const {return Pb;}
TLorentzVector GetPB() const {return PB;}
void PrintFourVectors() const;
void PrintReaction(bool withEx = true) const;
double CalkCM(double ExB); //momentum at CM frame
void CalReactionConstant();
std::pair<double, double> CalExThetaCM(double e, double z, double Bfield, double a);
void Event(double thetaCM_rad, double phiCM_rad);
double GetMomentumbCM() {return p;}
double GetReactionBeta() {return beta;}
double GetReactionGamma() {return gamma;}
double GetCMTotalEnergy() {return Etot;}
double GetEZSlope(double BField) {return 299.792458 * recoil.lightZ * abs(BField) / TMath::TwoPi() * beta / 1000.;} // MeV/mm
void CreateExDistribution();
int GetRandomExID(){
if( exDistribution ) {
return exDistribution->GetRandom();
}
return 0;
}
double GetRandomEx(){
if( exDistribution ) {
int exID = exDistribution->GetRandom();
return exList.ExList[exID].Ex;
}
return TMath::QuietNaN();
}
private:
ExcitedEnergies exList;
Recoil recoil;
ReactionConfig config;
std::string nameA, namea, nameb, nameB;
double thetaIN, phiIN;
double mA, ma, mb, mB;
double TA, T; // TA = KE of A pre u, T = total energy
double ExA, ExB;
bool isReady;
bool isBSet;
double k; // CM Boost momentum
double beta, gamma; //CM boost beta
double Etot;
double p; // CM frame momentum of b, B
double slope; // slope of the
TLorentzVector PA, Pa, Pb, PB;
TString format(TString name);
void Inititization();
TF1 * exDistribution;
static double exDistFunc(Double_t *x, Double_t * par){
return par[(int) x[0]];
}
};
TransferReaction::TransferReaction(ReactionConfig config, unsigned short ID){
Inititization();
SetA(config.beamA, config.beamZ);
Seta(config.targetA, config.targetZ);
SetExA(config.beamEx);
recoil = config.recoil[ID];
exList = config.exList[ID];
Setb(recoil.lightA, recoil.lightZ);
SetB(recoil.heavyA, recoil.heavyZ);
SetIncidentEnergyAngle(config.beamEnergy, 0, 0);
CalReactionConstant();
}
TransferReaction::TransferReaction(std::string configFile, unsigned short ID){
Inititization();
SetReactionFromFile(configFile, ID);
}
TransferReaction::TransferReaction(TMacro configMarco, unsigned short ID){
Inititization();
SetReactionFromTMacro(configMarco, ID);
}
TransferReaction::TransferReaction(int beamA, int beamZ,
int targetA, int targetZ,
int recoilA, int recoilZ,
float beamEnergy_AMeV){
Inititization();
SetReactionSimple(beamA, beamZ,
targetA, targetZ,
recoilA, recoilZ,
beamEnergy_AMeV);
}
void TransferReaction::Inititization(){
thetaIN = 0.;
phiIN = 0.;
SetA(12, 6, 0);
Seta(2,1);
Setb(1,1);
SetB(13,6);
TA = 6;
T = TA * config.beamA;
exDistribution = nullptr;
ExA = 0;
ExB = 0;
CalReactionConstant();
TLorentzVector temp (0,0,0,0);
PA = temp;
Pa = temp;
Pb = temp;
PB = temp;
}
TransferReaction::~TransferReaction(){
delete exDistribution;
}
void TransferReaction::SetA(int A, int Z, double Ex){
Isotope temp (A, Z);
mA = temp.Mass;
config.beamA = A;
config.beamZ = Z;
ExA = Ex;
nameA = temp.Name;
isReady = false;
isBSet = true;
}
void TransferReaction::Seta(int A, int Z){
Isotope temp (A, Z);
ma = temp.Mass;
config.targetA = A;
config.targetZ = Z;
namea = temp.Name;
isReady = false;
isBSet = false;
}
void TransferReaction::Setb(int A, int Z){
Isotope temp (A, Z);
mb = temp.Mass;
recoil.lightA = A;
recoil.lightZ = Z;
nameb = temp.Name;
isReady = false;
isBSet = false;
}
void TransferReaction::SetB(int A, int Z){
Isotope temp (A, Z);
mB = temp.Mass;
recoil.heavyA = A;
recoil.heavyZ = Z;
nameB = temp.Name;
isReady = false;
isBSet = true;
}
void TransferReaction::SetIncidentEnergyAngle(double KEA, double theta, double phi){
this->TA = KEA;
this->T = TA * config.beamA;
this->thetaIN = theta;
this->phiIN = phi;
isReady = false;
}
void TransferReaction::SetReactionSimple(int beamA, int beamZ,
int targetA, int targetZ,
int recoilA, int recoilZ,
float beamEnergy_AMeV){
config.SetReactionSimple(beamA, beamZ,
targetA, targetZ,
recoilA, recoilZ, beamEnergy_AMeV);
recoil = config.recoil[0];
SetA(config.beamA, config.beamZ);
Seta(config.targetA, config.targetZ);
Setb(recoil.lightA, recoil.lightZ);
SetB(recoil.heavyA, recoil.heavyZ);
SetIncidentEnergyAngle(config.beamEnergy, 0, 0);
CalReactionConstant();
}
void TransferReaction::SetExA(double Ex){
this->ExA = Ex;
isReady = false;
}
void TransferReaction::SetExB(double Ex){
this->ExB = Ex;
isReady = false;
}
void TransferReaction::SetReactionFromReactionConfigClass(ReactionConfig reactConfigClassObject, unsigned short ID){
config = reactConfigClassObject;
SetA(config.beamA, config.beamZ);
Seta(config.targetA, config.targetZ);
SetExA(config.beamEx);
if( ID > config.recoil.size() ){
printf("Reaction Config only has %zu recoil settings. input is %u. Abort.\n", config.recoil.size(), ID);
return;
}
recoil = config.recoil[ID];
exList = config.exList[ID];
Setb(recoil.lightA, recoil.lightZ);
SetB(recoil.heavyA, recoil.heavyZ);
SetIncidentEnergyAngle(config.beamEnergy, 0, 0);
CalReactionConstant();
}
void TransferReaction::SetReactionFromFile(std::string configFile, unsigned short ID){
if( config.LoadReactionConfig(configFile) ){
SetA(config.beamA, config.beamZ);
Seta(config.targetA, config.targetZ);
SetExA(config.beamEx);
if( ID > config.recoil.size() ){
printf("Reaction Config only has %zu recoil settings. input is %u. Abort.\n", config.recoil.size(), ID);
return;
}
recoil = config.recoil[ID];
exList = config.exList[ID];
Setb(recoil.lightA, recoil.lightZ);
SetB(recoil.heavyA, recoil.heavyZ);
SetIncidentEnergyAngle(config.beamEnergy, 0, 0);
CalReactionConstant();
}else{
printf("cannot read file %s.\n", configFile.c_str());
isReady = false;
}
}
void TransferReaction::SetReactionFromTMacro(TMacro configMacro, unsigned short ID){
if( config.LoadReactionConfig(&configMacro) ){
SetA(config.beamA, config.beamZ);
Seta(config.targetA, config.targetZ);
SetExA(config.beamEx);
if( ID > config.recoil.size() ){
printf("Reaction Config only has %zu recoil settings. input is %u. Abort.\n", config.recoil.size(), ID);
return;
}
recoil = config.recoil[ID];
exList = config.exList[ID];
Setb(recoil.lightA, recoil.lightZ);
SetB(recoil.heavyA, recoil.heavyZ);
SetIncidentEnergyAngle(config.beamEnergy, 0, 0);
CalReactionConstant();
}else{
printf("cannot read TMacro %s.\n", configMacro.GetName());
isReady = false;
}
}
TString TransferReaction::GetReactionName() const{
TString rName;
rName.Form("%s(%s,%s)%s", nameA.c_str(), namea.c_str(), nameb.c_str(), nameB.c_str());
return rName;
}
TString TransferReaction::format(TString name){
if( name.IsAlpha() ) return name;
int len = name.Length();
TString temp = name;
TString temp2 = name;
if( temp.Remove(0, len-2).IsAlpha()){
temp2.Remove(len-2);
}else{
temp = name;
temp.Remove(0, len-1);
temp2.Remove(len-1);
}
return "^{"+temp2+"}"+temp;
}
TString TransferReaction::GetReactionName_Latex(){
TString rName;
rName.Form("%s(%s,%s)%s @ %.2f MeV/u", format(nameA).Data(), format(namea).Data(), format(nameb).Data(), format(nameB).Data(), config.beamEnergy);
return rName;
}
double TransferReaction::CalkCM(double ExB){
if( !isBSet || !isReady) return TMath::QuietNaN();
return TMath::Sqrt( (Etot*Etot - TMath::Power(mb + mB + ExB,2)) * (Etot*Etot - TMath::Power(mb - mB - ExB,2)) ) / 2 / Etot;
}
void TransferReaction::CalReactionConstant(){
if( !isBSet){
recoil.heavyA = config.beamA + config.targetA - recoil.lightA;
recoil.heavyZ = config.beamZ + config.targetZ - recoil.lightZ;
Isotope temp (recoil.heavyA, recoil.heavyZ);
mB = temp.Mass;
isBSet = true;
}
k = TMath::Sqrt(TMath::Power(mA + ExA + T, 2) - (mA + ExA) * (mA + ExA));
beta = k / (mA + ExA + ma + T);
gamma = 1 / TMath::Sqrt(1- beta * beta);
Etot = TMath::Sqrt(TMath::Power(mA + ExA + ma + T,2) - k * k);
PA.SetXYZM(0, 0, k, mA + ExA);
PA.RotateY(thetaIN);
PA.RotateZ(phiIN);
Pa.SetXYZM(0,0,0,ma);
PA.SetUniqueID(config.beamZ);
Pa.SetUniqueID(config.targetZ);
Pb.SetUniqueID(recoil.lightZ);
PB.SetUniqueID(recoil.heavyZ);
isReady = true;
p = CalkCM(ExB);
}
void TransferReaction::PrintFourVectors() const {
printf("A : %10.2f %10.2f %10.2f %10.2f\n", PA.E(), PA.Px(), PA.Py(), PA.Pz());
printf("a : %10.2f %10.2f %10.2f %10.2f\n", Pa.E(), Pa.Px(), Pa.Py(), Pa.Pz());
printf("b : %10.2f %10.2f %10.2f %10.2f\n", Pb.E(), Pb.Px(), Pb.Py(), Pb.Pz());
printf("B : %10.2f %10.2f %10.2f %10.2f\n", PB.E(), PB.Px(), PB.Py(), PB.Pz());
printf("-------------------------------------------------------\n");
printf("B : %10.2f %10.2f %10.2f %10.2f\n",
PA.E() + Pa.E() - Pb.E() - PB.E(),
PA.Px() + Pa.Px() - Pb.Px() - PB.Px(),
PA.Py() + Pa.Py() - Pb.Py() - PB.Py(),
PA.Pz() + Pa.Pz() - Pb.Pz() - PB.Pz());
}
void TransferReaction::PrintReaction(bool withEx) const {
printf("=====================================================\n");
printf("\e[1m\e[33m %s \e[0m\n", GetReactionName().Data());
printf("=====================================================\n");
printf("------------------------------ Beam\n");
printf(" beam : A = %3d, Z = %2d, Ex = %.2f MeV\n", config.beamA, config.beamZ, config.beamEx);
printf(" beam Energy : %.2f +- %.2f MeV/u, dE/E = %5.2f %%\n", config.beamEnergy, config.beamEnergySigma, config.beamEnergySigma/config.beamEnergy);
printf(" Angle : %.2f +- %.2f mrad\n", config.beamTheta, config.beamThetaSigma);
printf(" offset : (x,y) = (%.2f, %.2f) mmm \n", config.beamX, config.beamY);
printf("------------------------------ Target\n");
printf(" target : A = %3d, Z = %2d \n", config.targetA, config.targetZ);
printf("------------------------------ Recoil\n");
printf(" light : A = %3d, Z = %2d \n", recoil.lightA, recoil.lightZ);
printf(" heavy : A = %3d, Z = %2d \n", recoil.heavyA, recoil.heavyZ);
printf("=====================================================\n");
if( withEx ) {
exList.Print();
printf("=====================================================\n");
}
}
void TransferReaction::Event(double thetaCM_rad, double phiCM_rad){
if( !isReady ) CalReactionConstant();
//---- to CM frame
TLorentzVector Pc = PA + Pa;
TVector3 b = Pc.BoostVector();
TVector3 vb(0,0,0);
if( b.Mag() > 0 ){
TVector3 v0 (0,0,0);
TVector3 nb = v0 - b;
TLorentzVector PAc = PA;
PAc.Boost(nb);
TVector3 vA = PAc.Vect();
TLorentzVector Pac = Pa;
Pac.Boost(nb);
TVector3 va = Pac.Vect();
//--- construct vb
vb = va;
vb.SetMag(p);
TVector3 ub = vb.Orthogonal();
vb.Rotate(thetaCM_rad, ub);
vb.Rotate(phiCM_rad + TMath::PiOver2(), va); // somehow, the calculation turn the vector 90 degree.
//vb.Rotate(phiCM , va); // somehow, the calculation turn the vector 90 degree.
}
//--- from Pb
TLorentzVector Pbc;
Pbc.SetVectM(vb, mb);
//--- from PB
TLorentzVector PBc;
//PBc.SetVectM(vB, mB + ExB);
PBc.SetVectM(-vb, mB + ExB);
//---- to Lab Frame
Pb = Pbc; Pb.Boost(b);
PB = PBc; PB.Boost(b);
}
std::pair<double, double> TransferReaction::CalExThetaCM(double e, double z, double Bfield, double perpDist){
double Ex = TMath::QuietNaN();
double thetaCM = TMath::QuietNaN();
double mass = mb;
double massB = mB;
double y = e + mass;
double slope = 299.792458 * recoil.lightZ * abs(Bfield) / TMath::TwoPi() * beta / 1000.; // MeV/mm;
double alpha = slope/beta;
double G = alpha * gamma * beta * perpDist ;
double Z = alpha * gamma * beta * z;
double H = TMath::Sqrt(TMath::Power(gamma * beta,2) * (y*y - mass * mass) ) ;
double Et = Etot;
if( TMath::Abs(Z) < H ) {
//using Newton's method to solve 0 == H * sin(phi) - G * tan(phi) - Z = f(phi)
double tolerrence = 0.001;
double phi = 0; //initial phi = 0 -> ensure the solution has f'(phi) > 0
double nPhi = 0; // new phi
int iter = 0;
do{
phi = nPhi;
nPhi = phi - (H * TMath::Sin(phi) - G * TMath::Tan(phi) - Z) / (H * TMath::Cos(phi) - G /TMath::Power( TMath::Cos(phi), 2));
iter ++;
if( iter > 10 || TMath::Abs(nPhi) > TMath::PiOver2()) break;
}while( TMath::Abs(phi - nPhi ) > tolerrence);
phi = nPhi;
// check f'(phi) > 0
double Df = H * TMath::Cos(phi) - G / TMath::Power( TMath::Cos(phi),2);
if( Df > 0 && TMath::Abs(phi) < TMath::PiOver2() ){
double K = H * TMath::Sin(phi);
double x = TMath::ACos( mass / ( y * gamma - K));
double k = mass * TMath::Tan(x); // momentum of particel b or B in CM frame
double EB = TMath::Sqrt(mass*mass + Et*Et - 2*Et*TMath::Sqrt(k*k + mass * mass));
Ex = EB - massB;
double hahaha1 = gamma* TMath::Sqrt(mass * mass + k * k) - y;
double hahaha2 = gamma* beta * k;
thetaCM = TMath::ACos(hahaha1/hahaha2) * TMath::RadToDeg();
//double pt = k * TMath::Sin(thetaCM * TMath::DegToRad());
//double pp = gamma*beta*TMath::Sqrt(mass*mass + k*k) - gamma * k * TMath::Cos(thetaCM * TMath::DegToRad());
//thetaLab = TMath::ATan(pt/pp) * TMath::RadToDeg();
}else{
Ex = TMath::QuietNaN();
thetaCM = TMath::QuietNaN();
//thetaLab = TMath::QuietNaN();
}
}else{
Ex = TMath::QuietNaN();
thetaCM = TMath::QuietNaN();
//thetaLab = TMath::QuietNaN();
}
return std::make_pair(Ex, thetaCM);
}
void TransferReaction::CreateExDistribution(){
int numEx = exList.ExList.size();
exDistribution = new TF1("exDistribution", TransferReaction::exDistFunc, 0, numEx, numEx);
for(int q = 0; q < numEx; q++){
exDistribution->SetParameter(q, exList.ExList[q].xsec*exList.ExList[q].SF);
}
}
#endif

33
Cleopatra/Cleopatra.C
View File

@ -27,14 +27,13 @@
* ********************************************************************/ * ********************************************************************/
#include <fstream> #include <fstream>
#include <stdlib.h> /* atof */
#include <cmath> #include <cmath>
#include <vector> #include <vector>
#include <iostream> #include <iostream>
#include <stdexcept> #include <stdexcept>
#include <stdio.h> #include <stdio.h>
#include <string> #include <string>
#include <cstdlib>
#include <sstream>
#include <TROOT.h> #include <TROOT.h>
#include <TFile.h> #include <TFile.h>
#include <TString.h> #include <TString.h>
@ -43,6 +42,8 @@
#include <TApplication.h> #include <TApplication.h>
#include "PlotTGraphTObjArray.h" #include "PlotTGraphTObjArray.h"
using namespace std;
int main (int argc, char *argv[]) { //TODO add angle range int main (int argc, char *argv[]) { //TODO add angle range
printf("=================================================================\n"); printf("=================================================================\n");
@ -59,7 +60,7 @@ int main (int argc, char *argv[]) { //TODO add angle range
} }
//================= read infile. extract the reactions, write pptolemy infile for each reaction //================= read infile. extract the reactions, write pptolemy infile for each reaction
std::string readFile = argv[1]; string readFile = argv[1];
double angMin = 0.; double angMin = 0.;
double angMax = 180.; double angMax = 180.;
double angStep = 1.; double angStep = 1.;
@ -71,30 +72,20 @@ int main (int argc, char *argv[]) { //TODO add angle range
angStep = atof(argv[4]); angStep = atof(argv[4]);
} }
std::string ptolemyInFileName = argv[1]; string ptolemyInFileName = argv[1];
ptolemyInFileName += ".in"; ptolemyInFileName += ".in";
printf("=================== Create InFile\n"); printf("=================== Create InFile\n");
InFileCreator( readFile, ptolemyInFileName, angMin, angMax, angStep); InFileCreator( readFile, ptolemyInFileName, angMin, angMax, angStep);
//================= run ptolemy //================= run ptolemy
std::string ptolemyOutFileName = argv[1];
char command[200];
string ptolemyOutFileName = argv[1];
ptolemyOutFileName += ".out"; ptolemyOutFileName += ".out";
std::ostringstream commandStream; sprintf(command, "./ptolemy <%s> %s", ptolemyInFileName.c_str(), ptolemyOutFileName.c_str());
#if defined(__linux__)
commandStream << "../Cleopatra/ptolemy <" << ptolemyInFileName << "> " << ptolemyOutFileName;
#elif defined(__APPLE__) && defined(__MACH__)
commandStream << "../Cleopatra/ptolemy_mac <" << ptolemyInFileName << "> " << ptolemyOutFileName;
#endif
std::string command = commandStream.str();
printf("=================== Run Ptolemy\n"); printf("=================== Run Ptolemy\n");
printf("%s \n", command.c_str()); printf("%s \n", command);
system(command);
int result = std::system(command.c_str());
if (result == -1) {
std::cerr << "Error executing system command." << std::endl;
return 1;
}
//================= extract the Xsec and save as txt and root //================= extract the Xsec and save as txt and root
printf("=================== Extract Cross-section\n"); printf("=================== Extract Cross-section\n");
@ -102,7 +93,7 @@ int main (int argc, char *argv[]) { //TODO add angle range
//================= Call root to plot the d.s.c. //================= Call root to plot the d.s.c.
printf("=================== Plot Result using ROOT.\n"); printf("=================== Plot Result using ROOT.\n");
std::string rootFileName = argv[1]; string rootFileName = argv[1];
rootFileName += ".root"; rootFileName += ".root";
TApplication app ("app", &argc, argv); TApplication app ("app", &argc, argv);
PlotTGraphTObjArray(rootFileName); PlotTGraphTObjArray(rootFileName);

205
Cleopatra/Cleopatra.sh Executable file
View File

@ -0,0 +1,205 @@
#!/bin/bash
########################################################################
#
# This is Cleopatra.sh, a scripted version for Cleopatra
#
# Using bash script provide flexibility that user can add difference
# compoenents during the calculation
#
# A full package includes fellowing:
# 1) create a in-file for ptolemy
# 2) run ptolemy from that in-file and output an out-file
# 3) extract cross-section distribution from the out-file
# save as txt or root TGraph format
# 4) call ROOT to draw the TGraph
# 5) load possible experimental Xsec and fit with Ptolemy calulation
#
# User can easily select/comment-out different component
# to suit their needs
#-------------------------------------------------------
# created by Ryan (Tsz Leung) Tang, Nov-18, 2018
# email: goluckyryan@gmail.com
########################################################################
#===== Call thisroot.h
ROOTPATH=$(which root)
len=${#ROOTPATH}
ROOTSOURCE=${ROOTPATH:0:$len-4}"thisroot.sh"
echo $ROOTSOURCE
source $ROOTSOURCE
#===== go to Cleopatra and make
cd ../Cleopatra
make
cd ../working
#================================ User Defualt Control
CreateInFile=0 # 0 = false, 1 = true
RunPtolemy=0
IsExtractXSec=0
PlotResult=0
SimTransfer=0
#============================================ USER don't need to change thing below
if [ $# -eq 0 ] ; then
echo "$./Cleopatra in-file X X X X X angMin angMax angStep"
echo " | | | | |"
echo " | | | | Simulate Transfer reaction? (1/0)"
echo " | | | |"
echo " | | | PlotResult? (1/0)"
echo " | | Extract cross-section? (2/1/0)"
echo " | | if 1 = extract Ratio to Rutherford for (d,d), (p,p)"
echo " | | if 2 = extract total Xsec for (d,d), (p,p), (n,n)"
echo " | | if 3 = extract Rutherford"
echo " | Run Ptolemy? (1/0)"
echo " Create infile? (1/0)"
echo "default angMin = 0, angMax = 50, angStep = 0.5"
exit 1
fi;
loadfile=$1
infile=$1".in"
outfile=$1".out"
rootfile=$1".root"
exFile=$1".Ex.txt"
if [ $# -eq 2 ]; then
CreateInFile=$2
fi;
if [ $# -eq 3 ]; then
CreateInFile=$2
RunPtolemy=$3
fi;
if [ $# -eq 4 ]; then
CreateInFile=$2
RunPtolemy=$3
IsExtractXSec=$4
fi;
if [ $# -eq 5 ]; then
CreateInFile=$2
RunPtolemy=$3
IsExtractXSec=$4
PlotResult=$5
fi;
if [ $# -eq 6 ]; then
CreateInFile=$2
RunPtolemy=$3
IsExtractXSec=$4
PlotResult=$5
SimTransfer=$6
fi;
if [ $# -eq 9 ]; then
CreateInFile=$2
RunPtolemy=$3
IsExtractXSec=$4
PlotResult=$5
SimTransfer=$6
angMin=$7
angMax=$8
angStep=$9
fi;
ExtractXsecMsg=""
if [ $IsExtractXSec -eq 1 ]; then
ExtractXsecMsg=", for (d,d)(p,p), extract Ratio to Rutherford"
elif [ $IsExtractXSec -eq 2 ]; then
ExtractXsecMsg=", for (d,d)(p,p), extract Total Xsec"
fi;
if [ $SimTransfer -eq 1 ]; then
angMin=0
angMax=180
angStep=0.5
fi
echo "#################################################################"
echo "## @@@@ @@ @@@@ @@@@ @@@@@ @@@@ @@@@@@ @@@@@ @@@@ ##"
echo "## @@ @@ @@ @@ @@ @@ @@ @@ @@ @@ @@ @@ @@ @@ ##"
echo "## @@ @@ @@@@ @@ @@ @@@@@ @@@@@@ @@ @@@@@ @@@@@@ ##"
echo "## @@ @@ @@ @@ @@ @@ @@ @@ @@ @@ @ @@ @@ ##"
echo "## @@@@ @@@@@ @@@@ @@@@ @@ @@ @@ @@ @@ @ @@ @@ ##"
echo "#################################################################"
echo "##### Cleopatra, Ptolemy for p,d,t,3He, a #####"
echo "#################################################################"
echo "Supported reactions:"
echo "elastics/inelastics : (p,p), (d,d)"
echo "1-neutron adding : (d,p), (t,d) | (a,3He)?"
echo "1-proton adding : (3He,d)"
echo "2-neutrons adding : (t,p)"
echo "1-neutron removal : (p,d), (d,t) "
echo "1-proton removal : (d,3He), (t,a)"
echo "================================================================="
echo "USER OPTION:"
echo " --- Is Create Ptolemy infile ? " ${CreateInFile}
echo " --- Is Run Ptolemy ? " ${RunPtolemy}
echo " --- Is Extract Cross-Section ? " ${IsExtractXSec} ${ExtractXsecMsg}
echo " --- Is Plot Results ? " ${PlotResult}
echo " ----Is Simulation Transfer ? " ${SimTransfer}
echo "================================================================="
#if [ ${CreateInFile} -eq 1 ] ; then
# echo "infile ----> "${loadfile}
#fi;
#
#if [ ${RunPtolemy} -eq 1 ] ; then
# echo "Ptolemy infile ----> "${infile}
# echo "Ptolemy outfile ----> "${outfile}
#fi;
if [ ${CreateInFile} -eq 1 ] ; then
if [ $# -eq 9 ]; then
../Cleopatra/InFileCreator ${loadfile} $angMin $angMax $angStep
else
../Cleopatra/InFileCreator ${loadfile} 0.0 50.0 0.5
fi
fi;
if [ ${RunPtolemy} -eq 1 ] ; then
echo "================================================================="
echo "===== Ptolemy Calcualtion ==================================="
echo "================================================================="
#check is linux or Mac
arch=$(uname)
if [ ${arch} == "Darwin" ] ; then
../Cleopatra/ptolemy_mac <${infile}> ${outfile}
ptolemyOUTPUT=$?
else
../Cleopatra/ptolemy <${infile}> ${outfile}
ptolemyOUTPUT=$?
fi
echo "ptolmey exit code : " $ptolemyOUTPUT
if [ ${ptolemyOUTPUT} -eq 0 ] ; then
echo "Ptolmey finished without problem. "
else
echo "Ptolemy has error, check ${infile} or ${outfile}"
exit 1;
fi
fi;
#===== Extracting XSec and save into *txt and *root
if [ ${IsExtractXSec} -ge 1 ] ; then
../Cleopatra/ExtractXSec ${outfile} ${IsExtractXSec}
fi;
if [ ${PlotResult} -eq 1 ] ; then
#===== Plot the result from the *.root
#./PlotTGraphTObjArray ${rootfile}
#--- other way within ROOT
echo "================================================================="
echo "===== Plot Result from ${rootfile}"
echo "================================================================="
com='../Cleopatra/PlotTGraphTObjArray.h("'${rootfile}'")'
echo ${com}
root -l ${com}
fi;
if [ ${SimTransfer} -eq 1 ] ; then
../Cleopatra/Transfer reactionConfig.txt detectorGeo.txt ${exFile} ${rootfile} transfer.root reaction.dat
fi;

73
Cleopatra/DWBARatio.C Normal file
View File

@ -0,0 +1,73 @@
TGraph * DWBARatio(int id1, int id2, TString rootFile="DWBA.root", bool isPlot = true){
TGraph * gR = NULL;
TFile * file = new TFile(rootFile, "READ");
if( file != NULL ){
printf("----- Opening %s\n", rootFile.Data());
}else{
printf("----- Opening %s .... Fail.\n", rootFile.Data());
return gR;
}
///get the TGraph of the distribution.
TObjArray * gList = (TObjArray *) file->Get("qList");
int size = gList->GetLast()+1;
printf("----- found %d d.s.c\n", size);
if( id1 > size || id2 > size ) {
printf(" id1 > %d || id2 > %d \n", size, size);
return gR;
}
TGraph * g1 = (TGraph *) gList->At(id1);
TGraph * g2 = (TGraph *) gList->At(id2);
double g1MaxY = g1->GetHistogram()->GetMaximum();
double g2MaxY = g2->GetHistogram()->GetMaximum();
g2->SetLineColor(2);
TCanvas * cDWBA = NULL ;
if( isPlot ){
cDWBA= new TCanvas("cDWBA", "DWBA Ratio", 1000, 500);
cDWBA->Divide(2,1);
cDWBA->cd(1);
cDWBA->cd(1)->SetLogy();
if( g1MaxY > g2MaxY ) {
g1->Draw();
g2->Draw("same");
}else{
g2->Draw();
g1->Draw("same");
}
TLegend * legend = new TLegend( 0.1, 0.9, 0.9, 1.0);
legend->AddEntry(g1, g1->GetName());
legend->AddEntry(g2, g2->GetName());
legend->Draw();
cDWBA->cd(2);
}
gR = new TGraph();
double x, y1, y2;
for( int i = 0 ; i < g1->GetN(); i++){
g1->GetPoint(i, x, y1);
g2->GetPoint(i, x, y2);
gR->SetPoint(i, x, y1/y2);
}
if( isPlot) gR->Draw();
return gR;
}

16
Cleopatra/DWBA_compare.C Normal file
View File

@ -0,0 +1,16 @@
#include "DWBARatio.C"
void DWBA_compare(){
TGraph * w[12];
for( int i = 0 ; i < 12; i++){
w[i] = DWBARatio(i, i+12, "DWBA.root", false);
w[i]->SetLineColor(i+1);
i == 0 ? w[i]->Draw("Al") : w[i]->Draw("same");
}
}

46
Cleopatra/ExtractXSec.h
View File

@ -23,10 +23,9 @@
#include <TString.h> #include <TString.h>
#include <TMath.h> #include <TMath.h>
#include <TGraph.h> #include <TGraph.h>
#include <TMacro.h>
#include <TF1.h> #include <TF1.h>
#include <TObjArray.h> #include <TObjArray.h>
#include "../Armory/AnalysisLib.h" #include "../armory/AnalysisLib.h"
using namespace std; using namespace std;
@ -294,9 +293,26 @@ int ExtractXSec (string readFile, int indexForElastic=1) {
} }
printf("---------------------------------------------------\n"); printf("---------------------------------------------------\n");
//================================== save *.Ex.txt
string saveExName = readFile;
int len = saveExName.length();
saveExName = saveExName.substr(0, len - 4);
saveExName += ".Ex.txt";
printf("Output : %s \n", saveExName.c_str());
FILE * file_Ex;
file_Ex = fopen(saveExName.c_str(), "w+");
fprintf(file_Ex, "//generated_by_ExtractXSec.h____Ex____Xsec(4pi)____SF____sigma\n");
for( int i = 0; i < numCal ; i++){
fprintf(file_Ex, "%9.5f %9.5f 1.0 0.000\n", Ex[i], partialXsec[i]);
}
fprintf(file_Ex, "#=====End_of_File\n");
fclose(file_Ex);
//================================== save file.Xsec.txt //================================== save file.Xsec.txt
string saveFileName = readFile; string saveFileName = readFile;
int len = saveFileName.length(); len = saveFileName.length();
saveFileName = saveFileName.substr(0, len - 4); saveFileName = saveFileName.substr(0, len - 4);
saveFileName += ".Xsec.txt"; saveFileName += ".Xsec.txt";
printf("Output : %s \n", saveFileName.c_str()); printf("Output : %s \n", saveFileName.c_str());
@ -308,7 +324,7 @@ int ExtractXSec (string readFile, int indexForElastic=1) {
} }
int space = 19; int space = 19;
fprintf(file_out, "%8s\t", "Angle"); fprintf(file_out, "%8s\t", "Angel");
for( int i = 0; i < numCal ; i++){ for( int i = 0; i < numCal ; i++){
fprintf(file_out, "%*s", space, title[i].c_str()); fprintf(file_out, "%*s", space, title[i].c_str());
} }
@ -322,16 +338,6 @@ int ExtractXSec (string readFile, int indexForElastic=1) {
fprintf(file_out, "\n"); fprintf(file_out, "\n");
} }
fclose(file_out); fclose(file_out);
//================================== Make TMacro for ExList
TMacro ExList;
TMacro ReactList;
ExList.AddLine("#---Ex relative_xsec SF sigma_in_MeV");
for( int i = 0; i < numCal ; i++){
ExList.AddLine(Form("%9.5f %9.5f 1.0 0.000", Ex[i], partialXsec[i]));
ReactList.AddLine(reaction[i].c_str());
}
//================================== Save in ROOT //================================== Save in ROOT
len = saveFileName.length(); len = saveFileName.length();
@ -339,8 +345,8 @@ int ExtractXSec (string readFile, int indexForElastic=1) {
TString fileName = saveFileName; TString fileName = saveFileName;
fileName += ".root"; fileName += ".root";
printf("Output : %s \n", fileName.Data()); printf("Output : %s \n", fileName.Data());
TFile * fileOut = new TFile(fileName, "RECREATE" ); TFile * fileOut = new TFile(fileName, "RECREATE" );
gList = new TObjArray(); ///no SetTitle() method for TObjArray gList = new TObjArray(); ///no SetTitle() method for TObjArray
gList->SetName("TGraph of d.s.c"); gList->SetName("TGraph of d.s.c");
TObjArray * fList = new TObjArray(); TObjArray * fList = new TObjArray();
@ -366,12 +372,12 @@ int ExtractXSec (string readFile, int indexForElastic=1) {
fList->Add(dist[i]); fList->Add(dist[i]);
//delete tempFunc;
} }
gList->Write("thetaCM_TGraph", 1); gList->Write("qList", 1);
fList->Write("thetaCM_TF1", 1); fList->Write("pList", 1);
ExList.Write("ExList");
ReactList.Write("ReactionList");
fileOut->Write(); fileOut->Write();
fileOut->Close(); fileOut->Close();

40
Cleopatra/FindThetaCM.C
View File

@ -22,35 +22,37 @@ int main(int argc, char *argv[]){
printf("=== Find ThetaCM convrage for each detector at Ex ====\n"); printf("=== Find ThetaCM convrage for each detector at Ex ====\n");
printf("=================================================================\n"); printf("=================================================================\n");
if(argc < 2 || argc > 7) { if(argc < 2 || argc > 6) {
printf("Usage: ./FindThetaCM Ex\n"); printf("Usage: ./FindThetaCM Ex\n");
printf("Usage: ./FindThetaCM Ex nDiv\n"); printf("Usage: ./FindThetaCM Ex nDiv\n");
printf("Usage: ./FindThetaCM Ex nDiv X-Ratio\n"); printf("Usage: ./FindThetaCM Ex nDiv X-Ratio\n");
printf("Usage: ./FindThetaCM Ex nDiv X-Ratio reactionTxt detGeoTxt ID\n"); printf("Usage: ./FindThetaCM Ex nDiv X-Ratio reactionTxt detGeoTxt\n");
printf(" * default is the first settings from reaction and detGeo.\n"); exit(0);
exit(0);
} }
double Ex = 0; double Ex = 0;
double xRatio = 0.95; double xRatio = 0.95;
int nDiv = 1; int nDiv = 1;
std::string reactionTxt = "reactionConfig.txt"; string reactionTxt = "reactionConfig.txt";
std::string detGeoTxt = "detectorGeo.txt"; string detGeoTxt = "detectorGeo.txt";
int ID = 0;
if ( argc >= 2 ){
if ( argc >= 2 ) Ex = atof(argv[1]); Ex = atof(argv[1]);
if ( argc >= 3 ) nDiv = atoi(argv[2]); }
if ( argc >= 4 ) xRatio = atof(argv[3]); if ( argc >= 3 ){
if ( argc >= 5 ) reactionTxt = argv[4]; nDiv = atoi(argv[2]);
if ( argc >= 6 ) detGeoTxt = argv[5]; }
if ( argc >= 6 ) ID = atoi(argv[6]); if ( argc >= 4 ){
xRatio = atof(argv[3]);
if( nDiv < 1 ) { }
printf(" nDiv must be >= 1 \n"); if ( argc >= 5 ){
return -1; reactionTxt = argv[4];
}
if ( argc >= 6 ){
detGeoTxt = argv[5];
} }
FindThetaCM(Ex, nDiv, xRatio, reactionTxt, detGeoTxt, ID); FindThetaCM(Ex, nDiv, xRatio, reactionTxt, detGeoTxt);
return 0; return 0;
} }

286
Cleopatra/FindThetaCM.h
View File

@ -16,128 +16,200 @@
#include "TMacro.h" #include "TMacro.h"
#include "TObjArray.h" #include "TObjArray.h"
#include "TGraph.h" #include "TGraph.h"
#include "../Cleopatra/ClassHelios.h" #include "../Cleopatra/HELIOS_LIB.h"
#include "../Cleopatra/ClassTransfer.h"
void FindThetaCM(double Ex, int nDivision=1, double XRATION = 0.95, void FindThetaCM(double Ex, int nDivision=1, double XRATION = 0.95,
std::string reactionConfigFileName="reactionConfig.txt", string basicConfig="reactionConfig.txt",
std::string detGeoFileName = "detectorGeo.txt", unsigned short ID = 0){ string detGeoFileName = "detectorGeo.txt"){
//---- reaction
int AA, zA; //beam
int Aa, za; //target
int Ab, zb; //recoil-1
double ExA;
///========================================================= load files //---- beam
double KEAmean, KEAsigma; // MeV/u , assume Guassian
double thetaMean, thetaSigma; // mrad , assume Guassian due to small angle
double xBeam, yBeam; // mm
TransferReaction reaction(reactionConfigFileName, ID); /**///========================================================= load files
reaction.SetExB(Ex); AnalysisLib::ReactionConfig reactionConfig;
reaction.CalReactionConstant(); AnalysisLib::DetGeo detGeo;
reaction.PrintReaction(false); TMacro * haha = new TMacro();
ReactionConfig reConfig = reaction.GetRectionConfig(); if( haha->ReadFile(basicConfig.c_str()) > 0 ){
Recoil recoil = reaction.GetRecoil(); reactionConfig = AnalysisLib::LoadReactionConfig(haha);
HELIOS helios(detGeoFileName, ID); AnalysisLib::PrintReactionConfig(reactionConfig);
helios.PrintGeometry();
DetGeo detGeo = helios.GetDetectorGeometry();
Array array = helios.GetArrayGeometry();
//calculate a TGraph for thetaCM vs z
const int nData = 170;
double px[nData];
double py[nData];
double mb = reaction.GetMass_b();
double kCM = reaction.GetMomentumbCM();
double q = TMath::Sqrt(mb*mb + kCM * kCM );
double beta = reaction.GetReactionBeta() ;
double BField = detGeo.Bfield;
double slope = reaction.GetEZSlope(BField);
double gamma = reaction.GetReactionGamma();
double perpDist = array.detPerpDist;
for(int i = 0; i < nData; i++){ KEAmean = reactionConfig.beamEnergy;
double thetacm = (i + 5.) * TMath::DegToRad(); KEAsigma = reactionConfig.beamEnergySigma;
double temp = TMath::TwoPi() * slope / beta / kCM * perpDist / TMath::Sin(thetacm);
px[i] = beta /slope * (gamma * beta * q - gamma * kCM * TMath::Cos(thetacm)) * (1 - TMath::ASin(temp)/TMath::TwoPi());
py[i] = thetacm * TMath::RadToDeg();
}
//find minimum z position thetaMean = reactionConfig.beamAngle;
TGraph * xt = new TGraph(100, py, px); thetaSigma = reactionConfig.beamAngleSigma;
xt->SetName("xt");
///double zMin0 = xt->Eval(0);
///printf("z for thetaCM = 0 : %f mm \n", zMin0);
///xt->Draw("AC*");
/// find the minimum z position and the corresponding theta
double zMin0 = 99999999;
double tMin0 = 99999999;
for( double ttt = 3 ; ttt < 20 ; ttt += 0.1 ){
double zzz = xt->Eval(ttt);
if( zzz < zMin0 ) {
zMin0 = zzz;
tMin0 = ttt;
}
}
printf(" z min %f mm at thetaCM %f deg \n", zMin0, tMin0);
TGraph * tx = new TGraph(nData, px, py); xBeam = reactionConfig.beamX;
tx->SetName(Form("tx")); yBeam = reactionConfig.beamY;
tx->SetLineColor(4);
//Remove nan data AA = reactionConfig.beamA; zA = reactionConfig.beamZ;
for( int i = tx->GetN() -1 ; i >= 0 ; i--){ Aa = reactionConfig.targetA; za = reactionConfig.targetZ;
if( TMath::IsNaN(tx->GetPointX(i)) ) tx->RemovePoint(i); Ab = reactionConfig.recoilLightA; zb = reactionConfig.recoilLightZ;
}
// tx->Draw("AC");
///========================================================= result ExA = reactionConfig.beamEx[0];
int iDet = array.colDet; }else{
double length = array.detLength; printf("cannot load %s \n", basicConfig.c_str());
std::vector<double> midPos; return;
}
vector<double> pos;
double a = 11.5;
double length = 50.5;
double firstPos = 0;
int iDet = 6;
int jDet = 4;
double BField = 0;
for(int i = 0; i < iDet; i++){ //=============================================================
if( array.firstPos > 0 ){ //=============================================================
midPos.push_back(array.detPos[i]+length/2.); //=============================================================
}else{ //===== Set Reaction
midPos.push_back(array.detPos[i]-length/2.); TransferReaction reaction;
} int AB = AA+Aa-Ab, zB = zA+za-zb;
// printf("%2d | %f \n", i, midPos.back()); reaction.SetA(AA,zA);
} reaction.Seta(Aa,za);
reaction.Setb(Ab,zb);
reaction.SetB(AB,zB);
reaction.SetIncidentEnergyAngle(KEAmean, 0, 0);
reaction.SetExB(Ex);
reaction.SetExA(ExA);
reaction.CalReactionConstant();
printf("===================================================\n");
printf("=========== %27s ===========\n", reaction.GetReactionName().Data());
printf("===================================================\n");
printf("----- loading reaction from : %s. \n", basicConfig.c_str());
printf(" Ex A: %7.3f MeV\n", ExA);
printf(" KE: %7.4f \n", KEAmean);
printf(" theta: %7.4f \n", thetaMean);
printf("offset(x,y): %7.4f, %7.4f mm \n", xBeam, yBeam);
printf(" Q-value: %7.4f MeV \n", reaction.GetQValue() );
printf(" Max Ex: %7.4f MeV \n", reaction.GetMaxExB() );
printf("===================================================\n");
printf("----- loading detector geometery : %s.", detGeoFileName.c_str());
TMacro * kaka = new TMacro();
if( kaka->ReadFile(detGeoFileName.c_str()) > 0 ){
detGeo = AnalysisLib::LoadDetectorGeo(kaka);
pos = detGeo.array1.detPos;
a = detGeo.array1.detPerpDist;
length = detGeo.array1.detLength;
firstPos = detGeo.array1.firstPos;
iDet = detGeo.array1.nDet;
jDet = detGeo.array1.mDet;
BField = detGeo.Bfield;
printf("... done.\n");
printf("==== ThetaCM in degree =================\n"); AnalysisLib::PrintDetGeo(detGeo);
printf(" x-ratio : %f, number of division : %d \n", XRATION, nDivision);
printf("\n"); }else{
for( int j = 0; j < nDivision + 1; j++) printf("%5.2f ", -XRATION + 2*XRATION/nDivision*j); printf("... fail\n");
printf(" <<-- in X \n"); return;
for( int j = 0; j < nDivision + 1; j++) printf("%5s ", " | "); }
printf("\n");
for( int j = 0; j < nDivision + 1; j++) printf("%5.2f ", length/2 -length*XRATION/2 + length*XRATION/nDivision*j);
printf(" <<-- in mm \n\n"); vector<double> midPos;
printf("========================= Ex : %6.4f MeV\n", Ex);
printf(" %6s - %6s | %6s, %6s, %6s\n", "Min", "Max", "Mean", "Dt", "sin(x)dx * 180/pi"); for(int i = 0; i < iDet; i++){
printf("-------------------------------------------------\n"); if( firstPos > 0 ){
for( int i = 0; i < iDet; i++){ midPos.push_back(pos[i]+length/2.);
double zMin = midPos[i]-length*XRATION/2.; }else{
double zMax = midPos[i]+length*XRATION/2.; midPos.push_back(pos[i]-length/2.);
double zLength = zMax - zMin; }
double zStep = zLength/(nDivision); }
for( int j = 0 ; j < nDivision ; j++){
//calculate a TGraph for thetaCM vs z
double tMin = (zMin + j*zStep > zMin0) ? tx->Eval(zMin + j*zStep) : TMath::QuietNaN(); double px[100];
double tMax = (zMin + (j+1)*zStep > zMin0) ? tx->Eval(zMin + (j+1)*zStep) : TMath::QuietNaN(); double py[100];
double tMean = (tMax + tMin)/2.; double mb = reaction.GetMass_b();
double dt = (tMax - tMin); double kCM = reaction.GetMomentumbCM();
double q = TMath::Sqrt(mb*mb + kCM * kCM );
double sintdt = TMath::Sin(tMean * TMath::DegToRad()) * dt ; double beta = reaction.GetReactionBeta() ;
double slope = 299.792458 * zb * abs(BField) / TMath::TwoPi() * beta / 1000.; // MeV/mm
double gamma = reaction.GetReactionGamma();
for(int i = 0; i < 100; i++){
double thetacm = (i + 5.) * TMath::DegToRad();
double temp = TMath::TwoPi() * slope / beta / kCM * a / TMath::Sin(thetacm);
px[i] = beta /slope * (gamma * beta * q - gamma * kCM * TMath::Cos(thetacm)) * (1 - TMath::ASin(temp)/TMath::TwoPi());
py[i] = thetacm * TMath::RadToDeg();
}
//find minimum z position
printf(" det-%d[%d]: %6.2f - %6.2f | %6.2f, %6.2f, %6.4f\n", i, j, tMin, tMax, tMean, dt, sintdt); TGraph * xt = new TGraph(100, py, px);
xt->SetName("xt");
///double zMin0 = xt->Eval(0);
///printf("z for thetaCM = 0 : %f mm \n", zMin0);
///xt->Draw("AC*");
/// find the minimum z position and the corresponding theta
double zMin0 = 0;
double tMin0 = 0;
for( double ttt = 3 ; ttt < 20 ; ttt += 0.1 ){
double zzz = xt->Eval(ttt);
if( zzz < zMin0 ) {
zMin0 = zzz;
tMin0 = ttt;
}
}
printf(" z min %f mm at thetaCM %f deg \n", zMin0, tMin0);
TGraph * tx = new TGraph(100, px, py);
tx->SetName(Form("tx"));
tx->SetLineColor(4);
//tx->Draw("AC*");
/**///========================================================= result
} printf("==== ThetaCM in degree =================\n");
if( nDivision > 0 ) printf("--------------\n"); printf("========================= x-ratio : %f, number of division : %d \n", XRATION, nDivision);
} printf("\n");
printf("================================================= \n"); for( int j = 0; j < nDivision + 1; j++) printf("%5.2f ", -XRATION + 2*XRATION/nDivision*j);
printf(" <<-- in X \n");
for( int j = 0; j < nDivision + 1; j++) printf("%5s ", " | ");
printf("\n");
for( int j = 0; j < nDivision + 1; j++) printf("%5.2f ", length/2 -length*XRATION/2 + length*XRATION/nDivision*j);
printf(" <<-- in cm \n\n");
printf("========================= Ex : %6.4f MeV\n", Ex);
printf(" %6s - %6s | %6s, %6s, %6s\n", "Min", "Max", "Mean", "Dt", "sin(x)dx * 180/pi");
printf("-------------------------------------------------\n");
for( int i = 0; i < iDet; i++){
double zMin = midPos[i]-length*XRATION/2.;
double zMax = midPos[i]+length*XRATION/2.;
double zLength = zMax - zMin;
double zStep = zLength/(nDivision);
for( int j = 0 ; j < nDivision ; j++){
double tMin = (zMin + j*zStep > zMin0) ? tx->Eval(zMin + j*zStep) : TMath::QuietNaN();
double tMax = (zMin + (j+1)*zStep > zMin0) ? tx->Eval(zMin + (j+1)*zStep) : TMath::QuietNaN();
double tMean = (tMax + tMin)/2.;
double dt = (tMax - tMin);
double sintdt = TMath::Sin(tMean * TMath::DegToRad()) * dt ;
printf(" det-%d[%d]: %6.2f - %6.2f | %6.2f, %6.2f, %6.4f\n", i, j, tMin, tMax, tMean, dt, sintdt);
}
if( nDivision > 0 ) printf("--------------\n");
}
printf("================================================= \n");
} }

1534
Cleopatra/HELIOS_LIB.h Normal file
View File

File diff suppressed because it is too large Load Diff

4
Cleopatra/InFileCreator.h
View File

@ -26,9 +26,9 @@
#include <stdlib.h> /* atof */ #include <stdlib.h> /* atof */
#include <vector> #include <vector>
#include "../Cleopatra/ClassIsotope.h" // for geting Z #include "../Cleopatra/Isotope.h" // for geting Z
#include "potentials.h" #include "potentials.h"
#include "../Armory/AnalysisLib.h" #include "../armory/AnalysisLib.h"
using namespace std; using namespace std;

2
Cleopatra/Isotope.C
View File

@ -14,7 +14,7 @@
#include <fstream> #include <fstream>
#include <stdlib.h> #include <stdlib.h>
#include "ClassIsotope.h" #include "Isotope.h"
using namespace std; using namespace std;

67
Cleopatra/ClassIsotope.h → Cleopatra/Isotope.h
View File

@ -20,8 +20,9 @@
#include "constant.h" // amu #include "constant.h" // amu
#include <stdlib.h> //atoi #include <stdlib.h> //atoi
#include <algorithm> #include <algorithm>
using namespace std;
std::string massData="../Cleopatra/mass20.txt"; string massData="/Cleopatra/mass20.txt";
// about the mass**.txt // about the mass**.txt
// Mass Excess = (ATOMIC MASS - A)*amu | e.g. n : (1.088664.91585E-6-1)*amu // Mass Excess = (ATOMIC MASS - A)*amu | e.g. n : (1.088664.91585E-6-1)*amu
@ -33,17 +34,15 @@ class Isotope {
public: public:
int A, Z; int A, Z;
double Mass, MassError, BEA; double Mass, MassError, BEA;
std::string Name, Symbol; string Name, Symbol;
std::string dataSource; string dataSource;
Isotope(){dataSource = massData;}; Isotope(){findHeliosPath();};
Isotope(int a, int z){ dataSource = massData; SetIso(a,z); }; Isotope(int a, int z){ findHeliosPath();SetIso(a,z); };
Isotope(std::string name){ dataSource = massData; SetIsoByName(name); }; Isotope(string name){ findHeliosPath(); SetIsoByName(name); };
void SetMassTablePath(std::string path){ dataSource = path;}
void SetIso(int a, int z); void SetIso(int a, int z);
void SetIsoByName(std::string name); void SetIsoByName(string name);
double CalSp(int Np, int Nn); // this for the Np-proton, Nn-neutron removal double CalSp(int Np, int Nn); // this for the Np-proton, Nn-neutron removal
double CalSp2(int a, int z); // this is for (a,z) nucleus removal double CalSp2(int a, int z); // this is for (a,z) nucleus removal
@ -60,10 +59,10 @@ public:
private: private:
void FindMassByAZ(int a, int z); // give mass, massError, BEA, Name, Symbol; void FindMassByAZ(int a, int z); // give mass, massError, BEA, Name, Symbol;
void FindMassByName(std::string name); // give Z, mass, massError, BEA; void FindMassByName(string name); // give Z, mass, massError, BEA;
int TwoJ(int nShell); int TwoJ(int nShell);
std::string Orbital(int nShell); string Orbital(int nShell);
int magic(int i){ int magic(int i){
switch (i){ switch (i){
case 0: return 2; break; case 0: return 2; break;
@ -110,7 +109,21 @@ private:
lineMass200 = 2774; lineMass200 = 2774;
} }
char * heliosPath;
bool isFindOnce; bool isFindOnce;
void findHeliosPath(){
heliosPath = getenv("HELIOSSYS");
if( heliosPath ){
dataSource = heliosPath;
dataSource += "/analysis" + massData;
}else{
dataSource = ".." + massData;
}
}
}; };
@ -120,16 +133,16 @@ void Isotope::SetIso(int a, int z){
FindMassByAZ(a,z); FindMassByAZ(a,z);
} }
void Isotope::SetIsoByName(std::string name){ void Isotope::SetIsoByName(string name){
FindMassByName(name); FindMassByName(name);
} }
void Isotope::FindMassByAZ(int A, int Z){ void Isotope::FindMassByAZ(int A, int Z){
std::string line; string line;
int lineNum=0; int lineNum=0;
int list_A, list_Z; int list_A, list_Z;
std::ifstream myfile; ifstream myfile;
int flag=0; int flag=0;
setFileLines(); setFileLines();
@ -158,11 +171,11 @@ void Isotope::FindMassByAZ(int A, int Z){
this->BEA = atof((line.substr(54,11)).c_str()); this->BEA = atof((line.substr(54,11)).c_str());
this->Mass = list_Z*mp + (list_A-list_Z)*mn - this->BEA/1000*list_A; this->Mass = list_Z*mp + (list_A-list_Z)*mn - this->BEA/1000*list_A;
this->MassError = atof((line.substr(65,7)).c_str()); this->MassError = atof((line.substr(65,7)).c_str());
std::string str = line.substr(20,2); string str = line.substr(20,2);
str.erase(remove(str.begin(), str.end(), ' '), str.end()); str.erase(remove(str.begin(), str.end(), ' '), str.end());
this->Symbol = str; this->Symbol = str;
std::ostringstream ss; ostringstream ss;
ss << A << this->Symbol; ss << A << this->Symbol;
this->Name = ss.str(); this->Name = ss.str();
flag = 1; flag = 1;
@ -189,7 +202,7 @@ void Isotope::FindMassByAZ(int A, int Z){
} }
} }
void Isotope::FindMassByName(std::string name){ void Isotope::FindMassByName(string name){
// done seperate the Mass number and the name // done seperate the Mass number and the name
if( name == "n" ) { if( name == "n" ) {
@ -207,7 +220,7 @@ void Isotope::FindMassByName(std::string name){
if( name == "t" ) name = "3H"; if( name == "t" ) name = "3H";
if( name == "a" ) name = "4He"; if( name == "a" ) name = "4He";
std::string temp = name; string temp = name;
int lastDigit = 0; int lastDigit = 0;
for(int i=0; temp[i]; i++){ for(int i=0; temp[i]; i++){
@ -238,12 +251,12 @@ void Isotope::FindMassByName(std::string name){
//printf(" Symbol = |%s| , Mass = %d\n", this->Symbol.c_str(), this->A); //printf(" Symbol = |%s| , Mass = %d\n", this->Symbol.c_str(), this->A);
// find the nucleus in the data // find the nucleus in the data
std::string line; string line;
int lineNum=0; int lineNum=0;
int list_A; int list_A;
std::string list_symbol; string list_symbol;
std::ifstream myfile; ifstream myfile;
int flag=0; int flag=0;
setFileLines(); setFileLines();
@ -276,11 +289,11 @@ void Isotope::FindMassByName(std::string name){
this->Mass = this->Z*mp + (list_A-this->Z)*mn - this->BEA/1000*list_A; this->Mass = this->Z*mp + (list_A-this->Z)*mn - this->BEA/1000*list_A;
this->MassError = atof((line.substr(65,7)).c_str()); this->MassError = atof((line.substr(65,7)).c_str());
std::string str = line.substr(20,2); string str = line.substr(20,2);
str.erase(remove(str.begin(), str.end(), ' '), str.end()); str.erase(remove(str.begin(), str.end(), ' '), str.end());
this->Symbol = str; this->Symbol = str;
std::ostringstream ss; ostringstream ss;
ss << this->A << this->Symbol; ss << this->A << this->Symbol;
this->Name = ss.str(); this->Name = ss.str();
flag = 1; flag = 1;
@ -359,7 +372,7 @@ int Isotope::TwoJ(int nShell){
return 0; return 0;
} }
std::string Isotope::Orbital(int nShell){ string Isotope::Orbital(int nShell){
switch(nShell){ switch(nShell){
case 0: return "0s1 "; break; // case 0: return "0s1 "; break; //
@ -403,7 +416,7 @@ void Isotope::ListShell(){
int n = A-Z; int n = A-Z;
int p = Z; int p = Z;
int k = std::min(n,p); int k = min(n,p);
int nMagic = 0; int nMagic = 0;
for( int i = 0; i < 7; i++){ for( int i = 0; i < 7; i++){
if( magic(i) < k && k <= magic(i+1) ){ if( magic(i) < k && k <= magic(i+1) ){
@ -421,7 +434,7 @@ void Isotope::ListShell(){
printf("------------------ Core:%3s, inner Core:%3s \n", (core2.Name).c_str(), (core1.Name).c_str()); printf("------------------ Core:%3s, inner Core:%3s \n", (core2.Name).c_str(), (core1.Name).c_str());
printf(" || "); printf(" || ");
int t = std::max(n,p); int t = max(n,p);
int nShell = 0; int nShell = 0;
do{ do{
int occ = TwoJ(nShell)+1; int occ = TwoJ(nShell)+1;
@ -499,6 +512,8 @@ void Isotope::Print(){
if (Mass > 0){ if (Mass > 0){
findHeliosPath();
printf(" using mass data : %s \n", dataSource.c_str()); printf(" using mass data : %s \n", dataSource.c_str());
printf(" mass of \e[47m\e[31m%s\e[m nucleus (Z,A)=(%3d,%3d) is \e[47m\e[31m%12.5f\e[m MeV, BE/A=%7.5f MeV\n", Name.c_str(), Z, A, Mass, BEA/1000.); printf(" mass of \e[47m\e[31m%s\e[m nucleus (Z,A)=(%3d,%3d) is \e[47m\e[31m%12.5f\e[m MeV, BE/A=%7.5f MeV\n", Name.c_str(), Z, A, Mass, BEA/1000.);
printf(" total BE : %12.5f MeV\n",BEA*A/1000.); printf(" total BE : %12.5f MeV\n",BEA*A/1000.);

54
Cleopatra/IsotopeShort.C Normal file
View File

@ -0,0 +1,54 @@
/***********************************************************************
*
* This is IsotopeShort.C for isotope mass-related quatilies
* for python web
*
* -----------------------------------------------------
* To compile
*
* g++ IsotopeShort.C -o IsotopesShort
*
* ------------------------------------------------------
* created by Ryan (Tsz Leung) Tang, Feb-20, 2021
* email: goluckyryan@gmail.com
* ********************************************************************/
#include <fstream>
#include <stdlib.h>
#include "Isotope.h"
using namespace std;
void Usage(){
cout << "./NuclearData Sym" << endl;
cout << "./NuclearData A Z" << endl;
exit(0);
}
int main (int argc, char *argv[]) {
if ( argc != 2 && argc != 3 && argc != 6) Usage();
Isotope iso1, iso2;
int Z, A, Za, Aa;
if (argc == 2){
iso1.SetIsoByName(argv[1]);
}
if (argc == 3){
A= atoi(argv[1]);
Z= atoi(argv[2]);
iso1.SetIso(A, Z);
}
//iso1.Print();
printf("A:%3d\n", iso1.A);
printf("Z:%3d\n", iso1.Z);
printf("N:%3d\n", iso1.A-iso1.Z);
printf("Name:%s|\n",iso1.Name.c_str());
printf("Mass:%13.4f\n", iso1.Mass);
printf("Sn:%13.4f\n", iso1.CalSp(0,1));
printf("Sp:%13.4f\n", iso1.CalSp(1,0));
printf("Sa:%13.4f\n", iso1.CalSp2(4,2));
printf("S2n:%13.4f\n", iso1.CalSp(0,2));
}

31
Cleopatra/PlotSimulation.C Normal file
View File

@ -0,0 +1,31 @@
#include <fstream>
#include <stdlib.h>
#include "Check_Simulation.C"
using namespace std;
int main (int argc, char *argv[]) {
printf("=================================================================\n");
printf("=================== Plot Simulation Canvas ======================\n");
printf("=================================================================\n");
if(argc < 2 ) {
printf("Usage: ./PlotSimulation input_root_file [config]\n");
exit(0);
}else{
printf("ROOT file : %s \n", argv[1]);
}
string rootFile = argv[1];
string config = "../Armory/Check_Simulation_Config.txt";
if( argc >= 3 ) config = argv[2];
printf("Config File : %s \n", config.c_str());
Int_t padSize = 500;
Check_Simulation(rootFile, config, padSize, true);
}

2
Cleopatra/PlotTGraphTObjArray.h
View File

@ -30,7 +30,7 @@ void PlotTGraphTObjArray(TString rootFileName, bool isSavePNG = false){
TFile * file = new TFile(rootFileName, "READ"); TFile * file = new TFile(rootFileName, "READ");
TObjArray * gList = (TObjArray *) file->FindObjectAny("thetaCM_TGraph"); TObjArray * gList = (TObjArray *) file->FindObjectAny("qList");
if( gList == NULL ) { if( gList == NULL ) {
printf("No Result was found.\n"); printf("No Result was found.\n");

132
Cleopatra/PySimHelper.py
View File

@ -1,132 +0,0 @@
#!/usr/bin/env python3
#============== experimental Simulation Helper using PyROOT and PyQT
#
# need pip install PyQt6
# need to make at Cleopatra
#
#=====================================================
import sys
from PyQt6.QtCore import Qt
from PyQt6.QtWidgets import QApplication, QWidget, QMainWindow, QLabel, QPushButton, QVBoxLayout, QPlainTextEdit, QGroupBox, QGridLayout
import subprocess
import ROOT
import webbrowser
def SaveTxtFromEditor():
if presentFileName != "" :
with open(presentFileName, "w") as f:
f.write(editor.toPlainText())
def LoadTxtToEditor(txtFileName):
global presentFileName
SaveTxtFromEditor()
presentFileName = txtFileName
with open(txtFileName) as f:
text = f.read()
editor.setPlainText(text)
def RunSimulation():
SaveTxtFromEditor()
bash_command = "../Cleopatra/SimTransfer reactionConfig.txt detectorGeo.txt 0 '' transfer.root"
process = subprocess.Popen(bash_command, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
output, error = process.communicate()
if process.returncode != 0:
print("Error:", error.decode())
else:
print("Output:", output.decode())
def OpenHttpServer():
global ser, file, tree
file = ROOT.TFile("transfer.root", "read")
tree = file.Get("tree")
hEZ = ROOT.TH2F("hEZ", "E - Z; z[mm]; e[MeV]", 400, -600, 0, 400, 0, 10)
hXY = ROOT.TH2F("hXY", "Array; X[mm]; Y[MeV]", 200, -20, 20, 200, -20, 20)
hRecoilXY = ROOT.TH2F("hRecoilXY", "Recoil; X[mm]; Y[MeV]", 400, -60, 60, 400, -60, 60)
hThetaCMZ = ROOT.TH2F("hThetaCMZ", "TheatCM - Z; X[mm]; thetaCM [deg]", 400, -600, 0, 400, 0, 60)
hExCal = ROOT.TH1F("hExCal", "ExCal; MeV", 400, -1, 5)
for event in tree:
if( event.hit != 1 or event.thetaCM < 10 or event.loop != 1) : continue
hEZ.Fill(event.array_hit_z, event.energy_light) # x, y
hXY.Fill(event.xArray, event.yArray)
hRecoilXY.Fill(event.xRecoil, event.yRecoil)
hThetaCMZ.Fill(event.array_hit_z, event.thetaCM)
hExCal.Fill(event.ExCal)
ser = ROOT.THttpServer("http:9876")
# ser.SetJSROOT("https://root.cern.ch/js/latest/")
ser.Register("/", hEZ)
ser.Register("/", hXY)
ser.Register("/", hRecoilXY)
ser.Register("/", hThetaCMZ)
ser.Register("/", hExCal)
ser.SetItemField("/","_layout","grid4x4")
ser.SetItemField("/","_drawitem","[hEZ, hRecoilXY, hExCal, hThetaCM]")
webbrowser.open("http://localhost:9876/")
########################################################
if __name__ == "__main__":
app = QApplication(sys.argv)
editor = QPlainTextEdit()
presentFileName = ""
ser = None
file = None
tree = None
window = QMainWindow()
window.setWindowTitle("Simulation Helper")
window.setFixedSize(800, 1000)
mainWidget = QWidget()
window.setCentralWidget(mainWidget)
layout = QGridLayout()
mainWidget.setLayout(layout)
reactionGroup = QGroupBox("Reaction", window)
layout.addWidget(reactionGroup, 0, 0)
reactionLayout = QVBoxLayout(reactionGroup)
bDetGeo = QPushButton("Detector Geo", reactionGroup)
reactionLayout.addWidget(bDetGeo)
bDetGeo.clicked.connect(lambda : LoadTxtToEditor("detectorGeo.txt"))
bReactionConfig = QPushButton("Reaction Config", reactionGroup)
reactionLayout.addWidget(bReactionConfig)
bReactionConfig.clicked.connect(lambda : LoadTxtToEditor("reactionConfig.txt"))
bSim = QPushButton("Simulation", reactionGroup)
reactionLayout.addWidget(bSim)
bSim.clicked.connect(RunSimulation)
bTest = QPushButton("Open Browser", reactionGroup)
reactionLayout.addWidget(bTest)
bTest.clicked.connect(OpenHttpServer)
layout.addWidget(editor, 0, 1, 5, 5)
LoadTxtToEditor("detectorGeo.txt")
# # Create PyQtGraph plot
# plot = PlotWidget()
# plot_item = plot.getPlotItem()
# plot_item.plot(x=[1, 2, 3], y=[4, 6, 2])
# layout.addWidget(plot)
# Show the window and start the event loop
window.show()
sys.exit(app.exec())

181
Cleopatra/SimAlpha.C
View File

@ -1,181 +0,0 @@
#include "../Cleopatra/ClassHelios.h"
#include "TROOT.h"
#include "TBenchmark.h"
#include "TLorentzVector.h"
#include "TMath.h"
#include "TFile.h"
#include "TF1.h"
#include "TTree.h"
#include "TRandom.h"
#include <stdlib.h>
#include <vector>
#include <fstream>
#include <TObjArray.h>
//----------- usage
// $root transfer.C+ | tee output.txt
// this will same the massage to output.txt
const double ma = 3727.3792; // alpha mass
void alpha( int numEvent = 100000){
//================================================= User Setting
std::string heliosDetGeoFile = "detectorGeo.txt";
int geoID = 0;
//std::vector<double> energy = {3.18, 5.16, 5.49, 5.81};
std::vector<double> energy = {5.34, 5.42, 5.68, 6.05, 6.23, 6.77, 8.78}; //228Th
//---- Over-ride HELIOS detector geometry
// double BField = 2.5; // T
// double BFieldTheta = 0.; // direction of B-field
// bool isCoincidentWithRecoil = false;
// double eSigma = 0.040 ; // detector energy sigma MeV
// double zSigma = 0.500 ; // detector position sigma mm
//---- save root file name
TString saveFileName = "SimAlpha.root";
//=============================================================
//=============================================================
printf("===================================================\n");
printf("============= Alpha source in HELIOS ============\n");
printf("===================================================\n");
int numEnergy = energy.size();
printf("========= Alpha Enegry : \n");
for( int i = 0; i < numEnergy ; i++){
printf("%2d | %6.2f MeV\n", i, energy[i]);
}
//======== Set HELIOS
printf("############################################## HELIOS configuration\n");
HELIOS helios;
// helios.OverrideMagneticFieldDirection(BFieldTheta);
// helios.OverrideFirstPos(-700);
//helios.OverrideDetectorDistance(5);
// bool sethelios = helios.SetDetectorGeometry(heliosDetGeoFile, geoID);
// if( !sethelios){
// helios.OverrideMagneticField(BField);
// printf("======== B-field : %5.2f T, Theta : %6.2f deg\n", BField, BFieldTheta);
// }
// helios.SetCoincidentWithRecoil(isCoincidentWithRecoil);
// printf("========== energy resol.: %f MeV\n", eSigma);
// printf("=========== pos-Z resol.: %f mm \n", zSigma);
helios.SetDetectorGeometry(heliosDetGeoFile, geoID);
helios.PrintGeometry();
//====================== build tree
TFile * saveFile = new TFile(saveFileName, "recreate");
TTree * tree = new TTree("tree", "tree");
double theta, phi, T;
int hit; // the output of Helios.CalHit
double e, z, x, t;
int loop, detID;
double dphi, rho; //rad of rotation, and radius
int energyID;
double xHit, yHit;
tree->Branch("hit", &hit, "hit/I");
tree->Branch("theta", &theta, "theta/D");
tree->Branch("phi", &phi, "phi/D");
tree->Branch("T", &T, "T/D");
tree->Branch("energy", &energy, "energy/D");
tree->Branch("energyID", &energyID, "energyID/I");
tree->Branch("e", &e, "e/D");
tree->Branch("z", &z, "z/D");
tree->Branch("t", &t, "t/D");
tree->Branch("detID", &detID, "detID/I");
tree->Branch("loop", &loop, "loop/I");
tree->Branch("dphi", &dphi, "dphi/D");
tree->Branch("rho", &rho, "rho/D");
tree->Branch("xHit", &xHit, "xHit/D");
tree->Branch("yHit", &yHit, "yHit/D");
//========timer
TBenchmark clock;
bool shown ;
clock.Reset();
clock.Start("timer");
shown = false;
printf("############################################## generating %d events \n", numEvent);
//====================================================== calculate
int count = 0;
TLorentzVector P;
TVector3 v;
for( int i = 0; i < numEvent; i++){
//==== generate alpha
theta = TMath::ACos(2 * gRandom->Rndm() - 1) ;
phi = TMath::TwoPi() * gRandom->Rndm();
energyID = gRandom->Integer(numEnergy);
T = energy[energyID];
double p = TMath::Sqrt( ( ma + T )*(ma + T) - ma* ma);
v.SetMagThetaPhi(p, theta, phi);
P.SetVectM(v, ma);
P.SetUniqueID(2); //alpha particle has charge 2
//################################### tree branches
//==== Helios
helios.CalArrayHit(P);
hit = helios.CheckDetAcceptance();
e = helios.GetEnergy() + gRandom->Gaus(0, helios.GetDetectorGeometry().array[geoID].eSigma);
trajectory orb = helios.GetTrajectory_b();
z = orb.z + gRandom->Gaus(0, helios.GetDetectorGeometry().array[geoID].zSigma);
t = orb.t;
loop = orb.effLoop;
detID = orb.detID;
dphi = orb.phi;
rho = orb.rho;
xHit = orb.x;
yHit = orb.y;
if( hit == 1) {
count ++;
}
tree->Fill();
//#################################################################### Timer
clock.Stop("timer");
Double_t time = clock.GetRealTime("timer");
clock.Start("timer");
if ( !shown ) {
if (fmod(time, 10) < 1 ){
printf( "%10d[%2d%%]| %8.2f sec | expect: %5.1f min \n", i, TMath::Nint((i+1)*100./numEvent), time , numEvent*time/(i+1)/60);
shown = 1;
}
}else{
if (fmod(time, 10) > 9 ){
shown = 0;
}
}
}
saveFile->Write();
saveFile->Close();
printf("=============== done. saved as %s. count(hit==1) : %d\n", saveFileName.Data(), count);
gROOT->ProcessLine(".q");
}
int main(){
alpha();
return 0;
}

235
Cleopatra/SimChecker.C
View File

@ -1,235 +0,0 @@
#include <TFile.h>
#include <TTree.h>
#include <TCanvas.h>
#include <TROOT.h>
#include <TObjArray.h>
#include <TStyle.h>
#include <TH2F.h>
#include <TH1F.h>
#include <TF1.h>
#include <TArc.h>
#include <TMath.h>
#include <TLine.h>
#include <TSpectrum.h>
#include <TGraph.h>
#include <TLegend.h>
#include <TLatex.h>
#include <TMacro.h>
#include <TObjArray.h>
#include <fstream>
#include <TCutG.h>
#include "../Armory/AnalysisLib.h"
#include "../Armory/ClassDetGeo.h"
#include "../Armory/ClassReactionConfig.h"
#include "../Cleopatra/ClassIsotope.h"
#include "../Cleopatra/ClassTransfer.h"
#include "../Cleopatra/ClassSimPlotter.h"
plotID StringToPlotID(TString str);
void SimChecker(TString filename = "transfer.root",
TString configFile = "../working/SimCheckerConfig.txt",
Int_t padSize = 500,
bool outputCanvas = false){
printf("=================================================================\n");
printf("==================== Simulate Checker ==================\n");
printf("=================================================================\n");
TFile * file = new TFile(filename, "read");
TTree * tree = (TTree*) file->Get("tree");
//*================= Get reactions and Ex
TMacro * ListOfReactions = (TMacro *) file->FindObjectAny("ListOfReactions");
const short numReact = ListOfReactions->GetListOfLines()->GetEntries();
printf(">>>>> %d reactions found.\n", numReact);
std::string reactionList[numReact];
for( int i = 0; i < numReact; i++ ){
std::string haha = ListOfReactions->GetListOfLines()->At(i)->GetName();
std::vector<std::string> kaka = AnalysisLib::SplitStr(haha, "|");
reactionList[i]= kaka[1];
}
ExcitedEnergies reactEx[numReact]; //2-D array [i][j] = i-reaction, j-Ex
TMacro * AllExList = (TMacro *) file->FindObjectAny("AllExList");
TMacro * ExID_ReactID_List = (TMacro *) file->FindObjectAny("ExID_ReactID_List");
const short numEx = ExID_ReactID_List->GetListOfLines()->GetEntries()-1;
for( int i = 1; i <= numEx; i++){
std::string haha = ExID_ReactID_List->GetListOfLines()->At(i)->GetName();
std::vector<std::string> kaka = AnalysisLib::SplitStr(haha, " ");
std::string dudu = AllExList->GetListOfLines()->At(i)->GetName();
std::vector<std::string> dada = AnalysisLib::SplitStr(dudu, " ");
short rID = atoi(kaka[1].c_str());
reactEx[rID].Add(atof(dada[0].c_str()),
atof(dada[1].c_str()),
atof(dada[2].c_str()),
atof(dada[3].c_str()));
}
for( int i = 0; i < numReact; i++ ){
printf("=========== %s\n", reactionList[i].c_str());
reactEx[i].Print();
}
//*================== detGeoID
TMacro * detGeotxt = (TMacro *) file->FindObjectAny("detGeo");
DetGeo detGeo(detGeotxt);
detGeo.Print(true);
//*================== Get EZ-curve
TObjArray * ezList = (TObjArray *) file->FindObjectAny("EZCurve");
//*================== Get thetaCM = 0
TObjArray * thetaCM0List = (TObjArray *) file->FindObjectAny("thetaCM_Z");
//^################################################ Find e-range, z-range
double zRange[numReact][2];
double eMax[numReact];
int count = 0;
for( int i = 0; i < numReact; i++ ){
zRange[i][0] = detGeo.array[i].zMin-50;
zRange[i][1] = detGeo.array[i].zMax+50;
eMax[i] = -1;
for( size_t j = 0; j < reactEx[i].ExList.size() ; j ++){
TGraph * func = (TGraph *) ezList->At(count);
double aaa = func->Eval(zRange[i][1]);
// printf(" xxxxxxxxxxxx %d, %d | %d %.3f\n", i, j, count, aaa);
if( aaa > eMax[i] ) eMax[i] = aaa;
count++;
}
eMax[i] = TMath::Ceil( eMax[i] * 1.1 );
}
// for( int i = 0; i < numReact; i++ ){
// printf(" %d | eMax : %.2f, zRange : %.2f, %.2f \n", i, eMax[i], zRange[i][0], zRange[i][1]);
// }
// //^################################################
TMacro * config = new TMacro(configFile);
int numLine = config->GetListOfLines()->GetSize();
TString gate;
std::vector<plotID> padPlotID;
float elumMax = 60;
float thetaCMMax = 60; //TODO add thetaCM curves in transfer, so that it can be determinated automatically
int rowCount = 0;
int colCount = 0;
bool startCanvasConfig = false;
bool startGateConfig = false;
bool startExtra = false;
for( int i = 0; i < numLine ; i++){
std::string haha = config->GetListOfLines()->At(i)->GetName();
std::vector<std::string> dudu = AnalysisLib::SplitStr(haha, ",");
TString lala = haha;
lala.Remove(3);
if( (lala == " " || lala == "// " || lala == "//=") && dudu.size() == 0) continue;
if( lala == "//#" ) break;
if( lala == "//*" ) {
startCanvasConfig = true;
// rowCount ++;
continue;
}
if( lala == "//^" ) {
startCanvasConfig = false;
startGateConfig = true;
continue;
}
if( lala == "//@" ) {
startGateConfig = false;
startExtra = true;
}
if( startCanvasConfig ){
rowCount ++;
// printf("|%s|\n", haha.c_str());
if( dudu.size() > colCount ) colCount = dudu.size();
for( size_t k = 0; k < dudu.size() ; k++){
padPlotID.push_back(StringToPlotID(dudu[k]));
}
}
if( startGateConfig ){
gate = haha;
}
if( startExtra ){
if( dudu[0] == "elum_Max" ) elumMax = atof(dudu[2].c_str());
if( dudu[0] == "thetaCM_Max" ) thetaCMMax = atof(dudu[2].c_str());
}
}
gStyle->SetOptStat("");
gStyle->SetStatY(0.9);
gStyle->SetStatX(0.9);
gStyle->SetStatW(0.4);
gStyle->SetStatH(0.2);
gStyle->SetLabelSize(0.05, "XY");
gStyle->SetTitleFontSize(0.1);
printf(" Canvas division | col : %d, row : %d \n", colCount, rowCount);
count = 0;
for( int i = 0; i < rowCount; i++){
for( int j = 0; j < colCount; j++){
printf("%6d", padPlotID[count]);
count++;
}
printf("\n");
}
printf("Gate : %s \n", gate.Data());
printf("elum Max : %.2f mm\n", elumMax);
printf("thetaCM Max : %.2f deg\n", thetaCMMax);
printf("#####################################################\n");
Plotter * plotter[numReact];
for( int i = 0; i < numReact; i++){
plotter[i] = new Plotter(tree, i, reactionList[i], detGeo, reactEx[i], gate, padPlotID);
plotter[i]->SetRanges(zRange[i][0], zRange[i][1], eMax[i], elumMax, thetaCMMax);
plotter[i]->SetCanvas(colCount, rowCount, 500, padPlotID);
plotter[i]->Plot();
}
return;
}
plotID StringToPlotID(TString str){
if( str == "pEZ") return plotID::pEZ; /// 0
if( str == "pRecoilXY") return plotID::pRecoilXY; /// 1
if( str == "pThetaCM" ) return plotID::pThetaCM; /// 2
if( str == "pExCal" ) return plotID::pExCal; /// 3
if( str == "pArrayXY" ) return plotID::pArrayXY; /// 4
if( str == "pInfo" ) return plotID::pInfo; /// 5
if( str == "pElum1XY" ) return plotID::pElum1XY; /// 6
if( str == "pRecoilXY1" ) return plotID::pRecoilXY1; /// 7
if( str == "pRecoilXY2" ) return plotID::pRecoilXY2; /// 8
if( str == "pTDiffZ" ) return plotID::pTDiffZ; /// 9
if( str == "pRecoilRThetaCM" ) return plotID::pRecoilRThetaCM; /// 10
if( str == "pRecoilRZ" ) return plotID::pRecoilRZ; /// 11
if( str == "pEElum1R" ) return plotID::pEElum1R; /// 12
if( str == "pRecoilRTR" ) return plotID::pRecoilRTR; /// 13
if( str == "pThetaCM_Z" ) return plotID::pThetaCM_Z; /// 14
if( str == "pElum1RThetaCM" ) return plotID::pElum1RThetaCM; /// 15
if( str == "pEmpty" ) return plotID::pEmpty ; /// 16
return plotID::pEmpty;
}

810
Cleopatra/SimTransfer.C
View File

@ -1,810 +0,0 @@
#include "TROOT.h"
#include "TBenchmark.h"
#include "TLorentzVector.h"
#include "TMath.h"
#include "TFile.h"
#include "TF1.h"
#include "TTree.h"
#include "TRandom.h"
#include "TGraph.h"
#include "TMacro.h"
#include <stdlib.h>
#include <vector>
#include <fstream>
#include <TObjArray.h>
#include "../Armory/ClassDetGeo.h"
#include "ClassTargetScattering.h"
#include "ClassDecay.h"
#include "ClassTransfer.h"
#include "ClassHelios.h"
void PrintEZPlotPara(TransferReaction tran, HELIOS helios){
printf("==================================== E-Z plot slope\n");
double betaRect = tran.GetReactionBeta() ;
double gamma = tran.GetReactionGamma();
double mb = tran.GetMass_b();
double pCM = tran.GetMomentumbCM();
double q = TMath::Sqrt(mb*mb + pCM*pCM); ///energy of light recoil in center of mass
double slope = tran.GetEZSlope(helios.GetBField()); /// MeV/mm
printf(" e-z slope : %f MeV/mm\n", slope);
// double intercept = q/gamma - mb; // MeV
// printf(" e-z intercept (ground state) : %f MeV\n", intercept);
}
void Transfer(
std::string basicConfig = "reactionConfig.txt",
std::string detGeoFile = "detectorGeo.txt",
TString ptolemyRoot = "DWBA.root",
TString saveFileName = "transfer.root"){
//*############################################# Set Reaction
// std::vector<double> kbCM; /// momentum of b in CM frame
// TF1 * exDistribution = nullptr;
DetGeo detGeoConfig;
ReactionConfig reactionConfig;
detGeoConfig.LoadDetectorGeo(detGeoFile, false);
reactionConfig.LoadReactionConfig(basicConfig);
const unsigned short numDetGeo = detGeoConfig.array.size();
const unsigned short numReact = reactionConfig.recoil.size();
if( numDetGeo != numReact ){
printf("\e[31m !!!!!! number of array is not equal to number of reaction.!!! \e[0m\n");
printf("Abort\n");
return;
}
unsigned short numTransfer = 0;
for( int i = 0; i < std::min(numDetGeo, numReact); i++){
if( detGeoConfig.array[i].enable ) numTransfer ++;
}
TransferReaction * transfer = new TransferReaction[numTransfer];
Decay * decay = new Decay[numTransfer];
HELIOS * helios = new HELIOS[numTransfer];
int count = 0;
for( unsigned short i = 0 ; i < numDetGeo; i++){
if( detGeoConfig.array[i].enable ){
transfer[count].SetReactionFromReactionConfigClass(reactionConfig, i);
if(transfer[count].GetRecoil().isDecay) {
decay[count].SetMotherDaugther(transfer[count].GetRecoil());
}
helios[count].SetDetectorGeometry(detGeoFile, i);
count ++;
}
}
printf("----- loading reaction setting from %s. \n", basicConfig.c_str());
printf("----- loading geometry setting from %s. \n", detGeoFile.c_str());
printf("\e[32m#################################### Reaction & HELIOS configuration\e[0m\n");
//*############################################# Load DWBAroot for thetaCM distribution
TFile * distFile = new TFile(ptolemyRoot, "read");
TObjArray * distList = nullptr;
TMacro * dwbaExList = nullptr;
TMacro * dwbaReactList = nullptr;
TMacro dwbaExList_Used;
TMacro dwbaReactList_Used;
bool useDWBA[numTransfer];
for( int i = 0; i < numTransfer; i++ ) useDWBA[i] = false;
if( distFile->IsOpen() ) {
printf("\e[32m#################################### Load DWBA input : %s \e[0m\n", ptolemyRoot.Data());
printf("--------- Found DWBA thetaCM distributions.\n");
printf(" Checking DWBA matches withe %s.\n", basicConfig.c_str());
distList = (TObjArray *) distFile->FindObjectAny("thetaCM_TF1"); // the function List
dwbaExList = (TMacro *) distFile->FindObjectAny("ExList");
dwbaExList_Used.AddLine(dwbaExList->GetListOfLines()->At(0)->GetName());
dwbaReactList = (TMacro *) distFile->FindObjectAny("ReactionList");
int numEx = dwbaExList->GetListOfLines()->GetSize() - 1 ;
ExcitedEnergies dwbaExTemp[numTransfer];
for( int i = 1; i <= numEx ; i++){
std::string reactionName = dwbaReactList->GetListOfLines()->At(i-1)->GetName();
printf(" %d | Checking %s from DWBA \n", i, reactionName.c_str());
for( int j = 0; j < numTransfer; j++){
//Check DWBA reaction is same as transfer setting
if( reactionName.find( transfer[j].GetReactionName().Data() ) != std::string::npos) {
printf(" >>> found %s in %s\n", transfer[j].GetReactionName().Data(), basicConfig.c_str());
std::string temp = dwbaExList->GetListOfLines()->At(i)->GetName();
dwbaReactList_Used.AddLine((reactionName + " | " + std::to_string(j)).c_str());
dwbaExList_Used.AddLine(temp.c_str());
if( temp[0] == '/' ) continue;
std::vector<std::string> tempStr = AnalysisLib::SplitStr(temp, " ");
dwbaExTemp[j].Add( atof(tempStr[0].c_str()), atof(tempStr[1].c_str()), 1.0, 0.00);
}else{
printf(" XXX Not found\n");
}
}
}
for( int i = 0; i < numTransfer; i++ ){
if( dwbaExTemp[i].ExList.size() > 0 ) {
transfer[i].GetExList()->Clear();
for( size_t j = 0 ; j < dwbaExTemp[i].ExList.size(); j ++ ){
transfer[i].GetExList()->Add( dwbaExTemp[i].ExList[j].Ex, dwbaExTemp[i].ExList[j].xsec, 1.0, 0.00);
}
useDWBA[i] = true;
}else{
printf("Cannot match %s with DWBA, use Reaction Ex List\n", transfer[i].GetReactionName().Data());
useDWBA[i] = false;
}
}
}else{
printf("------- no DWBA input. Use the ExList from %s\n", basicConfig.c_str());
}
std::vector<bool> listOfTransfer(numTransfer, false);
for( int i = 0; i < numTransfer; i++){
if( transfer[i].GetExList()->ExList.size() > 0 ){
listOfTransfer[i] = true;
transfer[i].PrintReaction(false);
transfer[i].GetExList()->Print();
helios[i].PrintGeometry();
transfer[i].CreateExDistribution();
// PrintEZPlotPara(transfer[i], helios[i]);
}else{
printf(" Reaction : %s has no excited energy. Skipped. \n", transfer[i].GetReactionName().Data());
}
}
//*############################################# build tree
printf("\e[32m#################################### building Tree in %s\e[0m\n", saveFileName.Data());
TFile * saveFile = new TFile(saveFileName, "recreate");
TTree * tree = new TTree("tree", "tree");
TMacro config(basicConfig.c_str());
TMacro detGeoTxt(detGeoFile.c_str());
config.SetName("ReactionConfig");
config.Write("reactionConfig");
detGeoTxt.Write("detGeo");
if( distList != NULL ) distList->Write("DWBA", 1);
if( dwbaExList != NULL ) {
dwbaExList_Used.Write("DWBA_ExList", 1);
dwbaReactList_Used.Write("DWBA_ReactionList", 1);
}
TMacro allExList;
allExList.AddLine("#---Ex relative_xsec SF sigma_in_MeV");
TMacro exIDReactIDList; //list of all ex and corresponding Reaction ID
exIDReactIDList.AddLine("#-- ExID ReactionID");
for( int i = 0; i < numTransfer; i++){
std::vector<EnergyLevel> tempExList = transfer[i].GetExList()->ExList;
for( size_t j = 0; j < tempExList.size(); j++){
allExList.AddLine(Form("%9.5f %9.5f %3.1f %5.3f", tempExList[j].Ex, tempExList[j].xsec, tempExList[j].SF, tempExList[j].sigma));
exIDReactIDList.AddLine(Form("%ld %d", j, i));
}
}
allExList.Write("AllExList");
exIDReactIDList.Write("ExID_ReactID_List");
TMacro hitMeaning;
hitMeaning.AddLine("======================= meaning of Hit\n");
for( int code = -15 ; code <= 1; code ++ ){
hitMeaning.AddLine( Form( "%4d = %s", code, helios[0].AcceptanceCodeToMsg(code).Data() ));
}
hitMeaning.AddLine(" other = unknown\n");
hitMeaning.AddLine("===========================================\n");
hitMeaning.Write("hitMeaning");
int hit; /// the output of Helios.CalHit
tree->Branch("hit", &hit, "hit/I");
int rID; /// reaction ID
tree->Branch("rID", &rID, "reactionID/I");
double thetab, phib, Tb;
double thetaB, phiB, TB;
tree->Branch("thetab", &thetab, "thetab/D");
tree->Branch("phib", &phib, "phib/D");
tree->Branch("Tb", &Tb, "Tb/D");
tree->Branch("thetaB", &thetaB, "thetaB/D");
tree->Branch("phiB", &phiB, "phiB/D");
tree->Branch("TB", &TB, "TB/D");
double thetaCM;
tree->Branch("thetaCM", &thetaCM, "thetaCM/D");
double e, z, detX, t, z0, tB;
tree->Branch("e", &e, "energy_light/D");
tree->Branch("x", &detX, "detector_x/D");
tree->Branch("z", &z, "array_hit_z/D");
tree->Branch("z0", &z0, "z-cycle/D");
tree->Branch("t", &t, "cycle_time_light/D");
tree->Branch("tB", &tB, "recoil_hit_time/D"); /// hit time for recoil on the recoil detector
int loop, detID, detRowID;
tree->Branch("detID", &detID, "detID/I");
tree->Branch("detRowID", &detRowID, "detRowID/I");
tree->Branch("loop", &loop, "loop/I");
double rho, rhoB; ///orbit radius
tree->Branch("rho", &rho, "orbit_radius_light/D");
tree->Branch("rhoB", &rhoB, "orbit_radius_heavy/D");
int ExID;
double Ex;
tree->Branch("ExID", &ExID, "ExID/I");
tree->Branch("Ex", &Ex, "Ex/D");
double ExCal, thetaCMCal;
tree->Branch("ExCal", &ExCal, "ExCal/D");
tree->Branch("thetaCMCal", &thetaCMCal, "thetaCMCal/D");
// double TbLoss; /// energy loss of particle-b from target scattering
// double KEAnew; ///beam energy after target scattering
// double depth; /// reaction depth;
// double Ecm;
// if( reactConfig.isTargetScattering ){
// tree->Branch("depth", &depth, "depth/D");
// tree->Branch("TbLoss", &TbLoss, "TbLoss/D");
// tree->Branch("KEAnew", &KEAnew, "KEAnew/D");
// tree->Branch("Ecm", &Ecm, "Ecm/D");
// }
double decayTheta; /// the change of thetaB due to decay
double xRecoil_d, yRecoil_d, rhoRecoil_d, Td;
bool isAnyDecay = false;
for( int i = 0; i < numTransfer; i++ ){
if( !listOfTransfer[i] ) continue;
isAnyDecay |= transfer[i].GetRecoil().isDecay;
}
if( isAnyDecay ) {
tree->Branch("decayTheta", &decayTheta, "decayTheta/D");
tree->Branch("xRecoil_d", &xRecoil_d, "xRecoil_d/D");
tree->Branch("yRecoil_d", &yRecoil_d, "yRecoil_d/D");
tree->Branch("rhoRecoil_d", &rhoRecoil_d, "rhoRecoil_d/D");
tree->Branch("Td", &Td, "Td/D");
}
double xArray, yArray, rhoArray; ///x, y, rho positon of particle-b on PSD
tree->Branch("xArray", &xArray, "xArray/D");
tree->Branch("yArray", &yArray, "yArray/D");
tree->Branch("rhoArray", &rhoArray, "rhoArray/D");
double xRecoil, yRecoil, rhoRecoil; /// x, y, rho position of particle-B on recoil-detector
tree->Branch("xRecoil", &xRecoil, "xRecoil/D");
tree->Branch("yRecoil", &yRecoil, "yRecoil/D");
tree->Branch("rhoRecoil", &rhoRecoil, "rhoRecoil/D");
///in case need ELUM
double xElum1, yElum1, rhoElum1;
bool isAnyElum1 = false;
for( int i = 0; i < numTransfer; i++ ){
if( !listOfTransfer[i] ) continue;
isAnyElum1 |= (helios[i].GetAuxGeometry().elumPos1 != 0);
}
if( isAnyElum1 ) {
tree->Branch("xElum1", &xElum1, "xElum1/D");
tree->Branch("yElum1", &yElum1, "yElum1/D");
tree->Branch("rhoElum1", &rhoElum1, "rhoElum1/D");
}
double xElum2, yElum2, rhoElum2;
bool isAnyElum2 = false;
for( int i = 0; i < numTransfer; i++ ){
if( !listOfTransfer[i] ) continue;
isAnyElum2 |= (helios[i].GetAuxGeometry().elumPos2 != 0);
}
if( isAnyElum2 ) {
tree->Branch("xElum2", &xElum2, "xElum2/D");
tree->Branch("yElum2", &yElum2, "yElum2/D");
tree->Branch("rhoElum2", &rhoElum2, "rhoElum2/D");
}
///in case need other recoil detector.
double xRecoil1, yRecoil1, rhoRecoil1;
bool isAnyRecoil1 = false;
for( int i = 0; i < numTransfer; i++ ){
if( !listOfTransfer[i] ) continue;
isAnyRecoil1 |= (helios[i].GetAuxGeometry().detPos1 != 0);
}
if( isAnyRecoil1 != 0 ){
tree->Branch("xRecoil1", &xRecoil1, "xRecoil1/D");
tree->Branch("yRecoil1", &yRecoil1, "yRecoil1/D");
tree->Branch("rhoRecoil1", &rhoRecoil1, "rhoRecoil1/D");
}
double xRecoil2, yRecoil2, rhoRecoil2;
bool isAnyRecoil2 = false;
for( int i = 0; i < numTransfer; i++ ){
if( !listOfTransfer[i] ) continue;
isAnyRecoil2 |= (helios[i].GetAuxGeometry().detPos2 != 0);
}
if( isAnyRecoil2 != 0 ){
tree->Branch("xRecoil2", &xRecoil2, "xRecoil2/D");
tree->Branch("yRecoil2", &yRecoil2, "yRecoil2/D");
tree->Branch("rhoRecoil2", &rhoRecoil2, "rhoRecoil2/D");
}
//======= list of reaction used.
TMacro listOfReaction;
for( int i = 0; i < numTransfer ; i++){
if( !listOfTransfer[i] ) continue;
listOfReaction.AddLine(Form("%2d | %s", i, transfer[i].GetReactionName_Latex().Data()));
}
listOfReaction.Write("ListOfReactions");
//======= function for e-z plot for ideal case
printf("++++ generate functions\n");
TObjArray * gList = new TObjArray();
gList->SetName("Constant thetaCM = 0 lines");
const int gxSize = numTransfer;
TF1 ** gx = new TF1*[gxSize];
TString name;
for( int i = 0; i < gxSize; i++){
double mb = transfer[i].GetMass_b();
double betaRect = transfer[i].GetReactionBeta();
double gamma = transfer[i].GetReactionGamma();
double slope = transfer[i].GetEZSlope(helios[0].GetBField()); /// MeV/mm
name.Form("g%d", i);
gx[i] = new TF1(name, "([0]*TMath::Sqrt([1]+[2]*x*x)+[5]*x)/([3]) - [4]", -1000, 1000);
double thetacm = i * TMath::DegToRad();
double gS2 = TMath::Power(TMath::Sin(thetacm)*gamma,2);
gx[i]->SetParameter(0, TMath::Cos(thetacm));
gx[i]->SetParameter(1, mb*mb*(1-gS2));
gx[i]->SetParameter(2, TMath::Power(slope/betaRect,2));
gx[i]->SetParameter(3, 1-gS2);
gx[i]->SetParameter(4, mb);
gx[i]->SetParameter(5, -gS2*slope);
gx[i]->SetNpx(1000);
gList->Add(gx[i]);
printf("/");
if( i > 1 && i % 40 == 0 ) printf("\n");
}
gList->Write("EZ_thetaCM", TObject::kSingleKey);
printf(" %d constant thetaCM functions\n", gxSize);
for( int i = 0; i < gxSize; i++){
delete gx[i];
}
delete [] gx;
delete gList;
//--- cal E-Z curve with finite detector correction
int numEx = 0;
for( int i = 0; i < numTransfer; i++){
if( !listOfTransfer[i] ) continue;
numEx += transfer[i].GetExList()->ExList.size();
}
TObjArray * fxList = new TObjArray();
TGraph ** fx = new TGraph*[numEx];
std::vector<double> px, py;
int countfx = 0;
count = 0;
for( int i = 0; i < numTransfer; i++ ){
if( !listOfTransfer[i] ) continue;
double mb = transfer[i].GetMass_b();
double betaRect = transfer[i].GetReactionBeta();
double gamma = transfer[i].GetReactionGamma();
double slope = transfer[i].GetEZSlope(helios[0].GetBField()); /// MeV/mm
for( size_t j = 0 ; j < transfer[i].GetExList()->ExList.size(); j++){
double Ex = transfer[i].GetExList()->ExList[j].Ex;
double kbCM = transfer[i].CalkCM(Ex);
double a = helios[i].GetDetRadius();
double q = TMath::Sqrt(mb*mb + kbCM * kbCM );
px.clear();
py.clear();
countfx = 0;
for(int i = 0; i < 100; i++){
double thetacm = TMath::Pi()/TMath::Log(100) * (TMath::Log(100) - TMath::Log(100-i)) ;//using log scale, for more point in small angle.
double temp = TMath::TwoPi() * slope / betaRect / kbCM * a / TMath::Sin(thetacm);
double pxTemp = betaRect /slope * (gamma * betaRect * q - gamma * kbCM * TMath::Cos(thetacm)) * (1 - TMath::ASin(temp)/TMath::TwoPi()) ;
double pyTemp = gamma * q - mb - gamma * betaRect * kbCM * TMath::Cos(thetacm);
if( TMath::IsNaN(pxTemp) || TMath::IsNaN(pyTemp) ) continue;
px.push_back(pxTemp);
py.push_back(pyTemp);
countfx ++;
}
fx[count] = new TGraph(countfx, &px[0], &py[0]);
name.Form("fx%d_%ld", i, j);
fx[count]->SetName(name);
fx[count]->SetLineColor(4);
fxList->Add(fx[count]);
printf(",");
count ++;
}
}
fxList->Write("EZCurve", TObject::kSingleKey);
printf(" %d (%d) e-z finite-size detector functions\n", numEx, count);
for( int i = 0 ; i < numEx; i++) delete fx[i];
delete [] fx;
delete fxList;
// //--- cal modified thetaCM vs z
// TObjArray * txList = new TObjArray();
// TGraph ** tx = new TGraph*[numEx];
// for( int j = 0 ; j < numEx; j++){
// double a = helios.GetDetRadius();
// double q = TMath::Sqrt(mb*mb + kbCM[j] * kbCM[j] );
// px.clear();
// py.clear();
// countfx = 0;
// for(int i = 0; i < 100; i++){
// double thetacm = (i + 8.) * TMath::DegToRad();
// double temp = TMath::TwoPi() * slope / betaRect / kbCM[j] * a / TMath::Sin(thetacm);
// double pxTemp = betaRect /slope * (gamma * betaRect * q - gamma * kbCM[j] * TMath::Cos(thetacm)) * (1 - TMath::ASin(temp)/TMath::TwoPi());
// double pyTemp = thetacm * TMath::RadToDeg();
// if( TMath::IsNaN(pxTemp) || TMath::IsNaN(pyTemp) ) continue;
// px.push_back(pxTemp);
// py.push_back(pyTemp);
// countfx ++;
// }
// tx[j] = new TGraph(countfx, &px[0], &py[0]);
// name.Form("tx%d", j);
// tx[j]->SetName(name);
// tx[j]->SetLineColor(4);
// txList->Add(tx[j]);
// printf("*");
// }
// txList->Write("thetaCM_Z", TObject::kSingleKey);
// printf(" %d thetaCM-z for finite-size detector functions\n", numEx);
//========timer
TBenchmark clock;
bool shown ;
clock.Reset();
clock.Start("timer");
shown = false;
//change the number of event into human easy-to-read form
int numEvent = reactionConfig.numEvents;
int digitLen = TMath::Floor(TMath::Log10(numEvent));
TString numEventStr;
if( 3 <= digitLen && digitLen < 6 ){
numEventStr.Form("%5.1f kilo", numEvent/1000.);
}else if ( 6<= digitLen && digitLen < 9 ){
numEventStr.Form("%6.2f million", numEvent/1e6);
}else if ( 9<= digitLen ){
numEventStr.Form("%6.2f billion", numEvent/1e9);
}
printf("\e[32m#################################### generating %s events \e[0m\n", numEventStr.Data());
double KEA = reactionConfig.beamEnergy;
double theta = reactionConfig.beamTheta;
double phi = 0.0;
TF1 * angDist = nullptr;
//*====================================================== calculate event
count = 0;
for( int i = 0; i < numEvent; i++){
bool redoFlag = true;
if( !reactionConfig.isRedo ) redoFlag = false;
do{
rID = gRandom->Integer( numTransfer );
if( !listOfTransfer[rID] ) continue;
//==== Set Ex of B
ExID = transfer[rID].GetRandomExID();
double sigma = transfer[rID].GetExList()->ExList[ExID].sigma;
Ex = transfer[rID].GetExList()->ExList[ExID].Ex + gRandom->Gaus(0, sigma);
transfer[rID].SetExB(Ex);
//==== Set incident beam
if( reactionConfig.beamEnergySigma != 0 ){
KEA = gRandom->Gaus(reactionConfig.beamEnergy, reactionConfig.beamEnergySigma);
}
if( reactionConfig.beamThetaSigma != 0 ){
theta = gRandom->Gaus(reactionConfig.beamTheta, reactionConfig.beamThetaSigma);
}
//==== for taregt scattering
transfer[rID].SetIncidentEnergyAngle(KEA, theta, 0.);
transfer[rID].CalReactionConstant();
// TLorentzVector PA = transfer.GetPA();
//depth = 0;
// if( isTargetScattering ){
// //==== Target scattering, only energy loss
// depth = targetThickness * gRandom->Rndm();
// msA.SetTarget(density, depth);
// TLorentzVector PAnew = msA.Scattering(PA);
// KEAnew = msA.GetKE()/reactConfig.beamA;
// transfer.SetIncidentEnergyAngle(KEAnew, theta, phi);
// transfer.CalReactionConstant();
// Ecm = transfer.GetCMTotalKE();
// }
//==== Calculate thetaCM, phiCM
if( distFile->IsOpen() && useDWBA[rID] ){
angDist = (TF1 *) distList->At(ExID);
thetaCM = angDist->GetRandom() / 180. * TMath::Pi();
}else{
thetaCM = TMath::ACos(2 * gRandom->Rndm() - 1) ;
}
double phiCM = TMath::TwoPi() * gRandom->Rndm();
//==== Calculate reaction
transfer[rID].Event(thetaCM, phiCM);
TLorentzVector Pb = transfer[rID].GetPb();
TLorentzVector PB = transfer[rID].GetPB();
// //==== Calculate energy loss of scattered and recoil in target
// if( isTargetScattering ){
// if( Pb.Theta() < TMath::PiOver2() ){
// msb.SetTarget(density, targetThickness - depth);
// }else{
// msb.SetTarget(density, depth);
// }
// Pb = msb.Scattering(Pb);
// TbLoss = msb.GetKELoss();
// msB.SetTarget(density, targetThickness - depth);
// PB = msB.Scattering(PB);
// }else{
// TbLoss = 0;
// }
//======= Decay of particle-B
int decayID = 0;
if( transfer[rID].GetRecoil().isDecay){
decayID = decay[rID].CalDecay(PB, Ex, 0, phiCM + TMath::Pi()/2); // decay to ground state
if( decayID == 1 ){
PB = decay[rID].GetDaugther_D();
//decayTheta = decay.GetAngleChange();
decayTheta = decay[rID].GetThetaCM();
PB.SetUniqueID(transfer[rID].GetRecoil().decayZ);
}else{
decayTheta = TMath::QuietNaN();
}
}
//################################### tree branches
//===== reaction
thetab = Pb.Theta() * TMath::RadToDeg();
thetaB = PB.Theta() * TMath::RadToDeg();
Tb = Pb.E() - Pb.M();
TB = PB.E() - PB.M();
phib = Pb.Phi() * TMath::RadToDeg();
phiB = PB.Phi() * TMath::RadToDeg();
//==== Helios
// printf(" thetaCM : %f, Tb : %f\n", thetaCM * TMath::RadToDeg(), Pb.M());
if( Tb > 0 || TB > 0 ){
helios[rID].CalArrayHit(Pb);
helios[rID].CalRecoilHit(PB);
hit = 2;
while( hit > 1 ){ hit = helios[rID].CheckDetAcceptance(); } /// while hit > 1, goto next loop;
trajectory orb_b = helios[rID].GetTrajectory_b();
trajectory orb_B = helios[rID].GetTrajectory_B();
e = helios[rID].GetEnergy() + gRandom->Gaus(0, helios[rID].GetArrayGeometry().eSigma );
double ranX = gRandom->Gaus(0, helios[rID].GetArrayGeometry().zSigma);
z = orb_b.z + ranX;
detX = helios[rID].GetDetX() + ranX;
z0 = orb_b.z0;
t = orb_b.t;
loop = orb_b.loop;
detID = orb_b.detID;
detRowID = orb_b.detRowID;
rho = orb_b.rho;
rhoArray = orb_b.R;
xArray = orb_b.x;
yArray = orb_b.y;
//ELUM
double elumPos1 = helios[rID].GetAuxGeometry().elumPos1;
if( elumPos1 != 0 ){
xElum1 = helios[rID].GetXPos(elumPos1);
yElum1 = helios[rID].GetYPos(elumPos1);
rhoElum1 = helios[rID].GetR (elumPos1);
}
double elumPos2 = helios[rID].GetAuxGeometry().elumPos2;
if( elumPos2 ){
xElum2 = helios[rID].GetXPos(elumPos2);
yElum2 = helios[rID].GetYPos(elumPos2);
rhoElum2 = helios[rID].GetR (elumPos2);
}
//Recoil
rhoRecoil = orb_B.R;
tB = orb_B.t;
xRecoil = orb_B.x;
yRecoil = orb_B.y;
rhoB = orb_B.rho;
//other recoil detectors
double recoilPos1 = helios[rID].GetAuxGeometry().detPos1;
if ( recoilPos1 != 0 ){
xRecoil1 = helios[rID].GetRecoilXPos(recoilPos1);
yRecoil1 = helios[rID].GetRecoilYPos(recoilPos1);
rhoRecoil1 = helios[rID].GetRecoilR (recoilPos1);
}
double recoilPos2 = helios[rID].GetAuxGeometry().detPos2;
if ( recoilPos2 != 0 ){
xRecoil2 = helios[rID].GetRecoilXPos(recoilPos2);
yRecoil2 = helios[rID].GetRecoilYPos(recoilPos2);
rhoRecoil2 = helios[rID].GetRecoilR (recoilPos2);
}
std::pair<double,double> ExThetaCM = transfer[rID].CalExThetaCM(e, z, helios[rID].GetBField(), helios[rID].GetDetRadius());
ExCal = ExThetaCM.first;
thetaCMCal = ExThetaCM.second;
//change thetaCM into deg
thetaCM = thetaCM * TMath::RadToDeg();
//if decay, get the light decay particle on the recoil;
if( transfer[rID].GetRecoil().isDecay ){
if( decayID == 1 ){
TLorentzVector Pd = decay[rID].GetDaugther_d();
Td = Pd.E() - Pd.M();
helios[rID].CalRecoilHit(Pd);
trajectory orb_d = helios[rID].GetTrajectory_B();
rhoRecoil_d = orb_d.R;
xRecoil_d = orb_d.x;
yRecoil_d = orb_d.y;
}else{
rhoRecoil_d = TMath::QuietNaN();
xRecoil_d = TMath::QuietNaN();
yRecoil_d = TMath::QuietNaN();
}
}
}else{
hit = -404;
}
if( hit == 1) count ++;
if( reactionConfig.isRedo ){
if( hit == 1) {
redoFlag = false;
}else{
redoFlag = true;
//printf("%d, %2d, thetaCM : %f, theta : %f, z0: %f \n", i, hit, thetaCM * TMath::RadToDeg(), thetab, helios.GetZ0());
}
}else{
redoFlag = false;
}
}while( redoFlag );
tree->Fill();
//#################################################################### Timer
clock.Stop("timer");
Double_t time = clock.GetRealTime("timer");
clock.Start("timer");
if ( !shown ) {
if (fmod(time, 10) < 1 ){
printf( "%10d[%2d%%]| %8.2f sec | expect: %5.1f min \n", i, TMath::Nint((i+1)*100./numEvent), time , numEvent*time/(i+1)/60);
shown = 1;
}
}else{
if (fmod(time, 10) > 9 ){
shown = 0;
}
}
}
saveFile->Write();
saveFile->Close();
distFile->Close();
delete angDist;
printf("=============== done. saved as %s. count(hit==1) : %d\n", saveFileName.Data(), count);
//gROOT->ProcessLine(".q");
delete [] transfer;
delete [] decay;
delete [] helios;
distFile->Close();
delete distFile;
delete distList;
delete dwbaExList;
delete dwbaReactList;
return;
}
int main (int argc, char *argv[]) {
printf("=================================================================\n");
printf("========== Simulate Transfer reaction in HELIOS ==========\n");
printf("=================================================================\n");
if(argc == 2 || argc > 6 ) {
printf("Usage: ./Transfer [1] [2] [3] [4] [5]\n");
printf(" default file name \n");
printf(" [1] reactionConfig.txt (input) reaction Setting \n");
printf(" [2] detectorGeo.txt (input) detector Setting \n");
printf(" [3] DWBA.root (input) thetaCM distribution from DWBA \n");
printf(" [4] transfer.root (output) rootFile name for output \n");
printf(" [5] 1 (input) 0 = no plot, 1 = plot \n");
printf("-----------------------------------------------------------------\n");
printf(" When DWBA.root provided.\n");
printf(" The excitation energies from the DWBA are used.\n");
printf(" And the excitation energies in reactionConfig.txt will be ignored\n");
printf("=================================================================\n");
return 0 ;
}
std::string basicConfig = "reactionConfig.txt";
std::string detGeoFile = "detectorGeo.txt";
TString ptolemyRoot = "DWBA.root"; // when no file, use isotropic distribution of thetaCM
TString saveFileName = "transfer.root";
bool isPlot = true;
if( argc >= 2) basicConfig = argv[1];
if( argc >= 3) detGeoFile = argv[2];
if( argc >= 4) ptolemyRoot = argv[3];
if( argc >= 5) saveFileName = argv[4];
if( argc >= 6) isPlot = atoi(argv[5]);
Transfer( basicConfig, detGeoFile, ptolemyRoot, saveFileName);
//run Cleopatra/SimChecker.C
if( isPlot ){
std::ifstream file_in;
file_in.open("../Cleopatra/SimChecker.C", std::ios::in);
if( file_in){
printf("---- running ../Cleopatra/SimChecker.C on %s \n", saveFileName.Data());
TString cmd;
cmd.Form("root -l '../Cleopatra/SimChecker.C(\"%s\")'", saveFileName.Data());
system(cmd.Data());
}else{
printf("cannot find ../Cleopatra/SimChecker.C \n");
}
}
return 0;
}

722
Cleopatra/SimTransfer_single.C
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@ -1,722 +0,0 @@
#include "TROOT.h"
#include "TBenchmark.h"
#include "TLorentzVector.h"
#include "TMath.h"
#include "TFile.h"
#include "TF1.h"
#include "TTree.h"
#include "TRandom.h"
#include "TGraph.h"
#include "TMacro.h"
#include <stdlib.h>
#include <vector>
#include <fstream>
#include <TObjArray.h>
#include "../Armory/ClassDetGeo.h"
#include "ClassTargetScattering.h"
#include "ClassDecay.h"
#include "ClassTransfer.h"
#include "ClassHelios.h"
double exDistFunc(Double_t *x, Double_t * par){
return par[(int) x[0]];
}
void PrintEZPlotPara(TransferReaction tran, HELIOS helios){
printf("==================================== E-Z plot slope\n");
double betaRect = tran.GetReactionBeta() ;
double gamma = tran.GetReactionGamma();
double mb = tran.GetMass_b();
double pCM = tran.GetMomentumbCM();
double q = TMath::Sqrt(mb*mb + pCM*pCM); ///energy of light recoil in center of mass
double slope = tran.GetEZSlope(helios.GetBField()); /// MeV/mm
printf(" e-z slope : %f MeV/mm\n", slope);
double intercept = q/gamma - mb; // MeV
printf(" e-z intercept (ground state) : %f MeV\n", intercept);
}
void Transfer(
std::string basicConfig = "reactionConfig.txt",
std::string heliosDetGeoFile = "detectorGeo.txt",
unsigned short ID = 0, // this is the ID for the array
TString ptolemyRoot = "DWBA.root",
TString saveFileName = "transfer.root"){
//*############################################# Set Reaction
TransferReaction transfer;
HELIOS helios;
Decay decay;
std::vector<double> kbCM; /// momentum of b in CM frame
TF1 * exDist = nullptr;
transfer.SetReactionFromFile(basicConfig, ID);
helios.SetDetectorGeometry(heliosDetGeoFile, ID);
printf("*****************************************************************\n");
printf("*\e[1m\e[33m %27s \e[0m*\n", transfer.GetReactionName().Data());
printf("*****************************************************************\n");
printf("----- loading reaction setting from %s. \n", basicConfig.c_str());
printf("----- loading geometry setting from %s. \n", heliosDetGeoFile.c_str());
printf("\e[32m#################################### Reaction & HELIOS configuration\e[0m\n");
transfer.PrintReaction(false);
if(transfer.GetRecoil().isDecay) {
decay.SetMotherDaugther(transfer.GetRecoil());
}
helios.PrintGeometry();
PrintEZPlotPara(transfer, helios);
DetGeo detGeo = helios.GetDetectorGeometry();
Array array = helios.GetArrayGeometry();
Auxillary aux = helios.GetAuxGeometry();
ReactionConfig reactConfig = transfer.GetRectionConfig();
Recoil recoil = transfer.GetRecoil();
//*############################################# save reaction.dat
// if( filename != "" ) {
// FILE * keyParaOut;
// keyParaOut = fopen (filename.Data(), "w+");
// printf("=========== save key reaction constants to %s \n", filename.Data());
// fprintf(keyParaOut, "%-15.4f //%s\n", transfer.GetMass_b(), "mass_b");
// fprintf(keyParaOut, "%-15d //%s\n", reactConfig.recoilLightZ, "charge_b");
// fprintf(keyParaOut, "%-15.8f //%s\n", transfer.GetReactionBeta(), "betaCM");
// fprintf(keyParaOut, "%-15.4f //%s\n", transfer.GetCMTotalEnergy(), "Ecm");
// fprintf(keyParaOut, "%-15.4f //%s\n", transfer.GetMass_B(), "mass_B");
// fprintf(keyParaOut, "%-15.4f //%s\n", slope/betaRect, "alpha=slope/betaRect");
// fflush(keyParaOut);
// fclose(keyParaOut);
// }
//*############################################# Target scattering, only energy loss
// bool isTargetScattering = reactConfig.isTargetScattering;
// float density = reactConfig.targetDensity;
// float targetThickness = reactConfig.targetThickness;
// if(isTargetScattering) printf("\e[32m#################################### Target Scattering\e[0m\n");
// TargetScattering msA;
// TargetScattering msB;
// TargetScattering msb;
// if(reactConfig.isTargetScattering) printf("======== Target : (thickness : %6.2f um) x (density : %6.2f g/cm3) = %6.2f ug/cm2\n",
// targetThickness * 1e+4,
// density,
// targetThickness * density * 1e+6);
// if( reactConfig.isTargetScattering ){
// msA.LoadStoppingPower(reactConfig.beamStoppingPowerFile);
// msb.LoadStoppingPower(reactConfig.recoilLightStoppingPowerFile);
// msB.LoadStoppingPower(reactConfig.recoilHeavyStoppingPowerFile);
// }
ExcitedEnergies exList = transfer.GetRectionConfig().exList[ID];
//*############################################# Load DWBAroot for thetaCM distribution
printf("\e[32m#################################### Load DWBA input : %s \e[0m\n", ptolemyRoot.Data());
TF1 * dist = NULL;
TFile * distFile = new TFile(ptolemyRoot, "read");
TObjArray * distList = nullptr;
TMacro * dwbaExList = nullptr;
TMacro * dwbaReactList = nullptr;
TMacro dwbaExList_Used;
if( distFile->IsOpen() ) {
printf("--------- Found DWBA thetaCM distributions. Use the ExList from DWBA.\n");
distList = (TObjArray *) distFile->FindObjectAny("thetaCM_TF1"); // the function List
dwbaExList = (TMacro *) distFile->FindObjectAny("ExList");
dwbaExList_Used.AddLine(dwbaExList->GetListOfLines()->At(0)->GetName());
dwbaReactList = (TMacro *) distFile->FindObjectAny("ReactionList");
exList.Clear();
int numEx = dwbaExList->GetListOfLines()->GetSize() - 1 ;
for(int i = 1; i <= numEx ; i++){
std::string reactionName = dwbaReactList->GetListOfLines()->At(i-1)->GetName();
if( reactionName.find( transfer.GetReactionName().Data() ) != std::string::npos) {
std::string temp = dwbaExList->GetListOfLines()->At(i)->GetName();
dwbaExList_Used.AddLine(temp.c_str());
if( temp[0] == '/' ) continue;
std::vector<std::string> tempStr = AnalysisLib::SplitStr(temp, " ");
exList.Add( atof(tempStr[0].c_str()), atof(tempStr[1].c_str()), 1.0, 0.00);
}
}
}else{
printf("------- no DWBA input. Use the ExList from %s\n", basicConfig.c_str());
}
printf("------------------------------ Heavy Recoil excitation\n");
printf("Energy[MeV] Rel.Xsec SF sigma\n");
int numEx = exList.ExList.size();
for( int j = 0; j < numEx; j++){
double ex = exList.ExList[j].Ex;
kbCM.push_back(transfer.CalkCM(ex));
int decayID = decay.CalDecay(TLorentzVector (0,0,0,0), ex, 0);
exList.ExList[j].Print(decayID == 1 ? "-->Decay" : "\n");
}
//---- create Ex-distribution
if( exList.ExList.size() > 1 ) {
printf("---- creating Ex-distribution \n");
exDist = new TF1("exDist", exDistFunc, 0, numEx, numEx);
for(int q = 0; q < numEx; q++){
exDist->SetParameter(q, exList.ExList[q].xsec*exList.ExList[q].SF);
}
}
//*############################################# build tree
printf("\e[32m#################################### building Tree in %s\e[0m\n", saveFileName.Data());
TFile * saveFile = new TFile(saveFileName, "recreate");
TTree * tree = new TTree("tree", "tree");
TMacro config(basicConfig.c_str());
TMacro detGeoTxt(heliosDetGeoFile.c_str());
config.SetName(transfer.GetReactionName_Latex().Data());
config.Write("reactionConfig");
detGeoTxt.Write("detGeo");
if( distList != NULL ) distList->Write("DWBA", 1);
if( dwbaExList != NULL ) dwbaExList_Used.Write("DWBA_ExList", 1);
TMacro idMacro;
idMacro.AddLine(Form("%d", ID));
idMacro.Write("detGeoID");
TMacro hitMeaning;
hitMeaning.AddLine("======================= meaning of Hit\n");
for( int code = -15 ; code <= 1; code ++ ){
hitMeaning.AddLine( Form( "%4d = %s", code, helios.AcceptanceCodeToMsg(code).Data() ));
}
hitMeaning.AddLine(" other = unknown\n");
hitMeaning.AddLine("===========================================\n");
hitMeaning.Write("hitMeaning");
int hit; /// the output of Helios.CalHit
tree->Branch("hit", &hit, "hit/I");
double thetab, phib, Tb;
double thetaB, phiB, TB;
tree->Branch("thetab", &thetab, "thetab/D");
tree->Branch("phib", &phib, "phib/D");
tree->Branch("Tb", &Tb, "Tb/D");
tree->Branch("thetaB", &thetaB, "thetaB/D");
tree->Branch("phiB", &phiB, "phiB/D");
tree->Branch("TB", &TB, "TB/D");
double thetaCM;
tree->Branch("thetaCM", &thetaCM, "thetaCM/D");
double e, z, detX, t, z0, tB;
tree->Branch("e", &e, "energy_light/D");
tree->Branch("x", &detX, "detector_x/D");
tree->Branch("z", &z, "array_hit_z/D");
tree->Branch("z0", &z0, "z-cycle/D");
tree->Branch("t", &t, "cycle_time_light/D");
tree->Branch("tB", &tB, "recoil_hit_time/D"); /// hit time for recoil on the recoil detector
int loop, detID, detRowID;
tree->Branch("detID", &detID, "detID/I");
tree->Branch("detRowID", &detRowID, "detRowID/I");
tree->Branch("loop", &loop, "loop/I");
double rho, rhoB; ///orbit radius
tree->Branch("rho", &rho, "orbit_radius_light/D");
tree->Branch("rhoB", &rhoB, "orbit_radius_heavy/D");
int ExID;
double Ex;
tree->Branch("ExID", &ExID, "ExID/I");
tree->Branch("Ex", &Ex, "Ex/D");
double ExCal, thetaCMCal;
tree->Branch("ExCal", &ExCal, "ExCal/D");
tree->Branch("thetaCMCal", &thetaCMCal, "thetaCMCal/D");
// double TbLoss; /// energy loss of particle-b from target scattering
// double KEAnew; ///beam energy after target scattering
// double depth; /// reaction depth;
// double Ecm;
// if( reactConfig.isTargetScattering ){
// tree->Branch("depth", &depth, "depth/D");
// tree->Branch("TbLoss", &TbLoss, "TbLoss/D");
// tree->Branch("KEAnew", &KEAnew, "KEAnew/D");
// tree->Branch("Ecm", &Ecm, "Ecm/D");
// }
double decayTheta; /// the change of thetaB due to decay
double xRecoil_d, yRecoil_d, rhoRecoil_d, Td;
if( recoil.isDecay ) {
tree->Branch("decayTheta", &decayTheta, "decayTheta/D");
tree->Branch("xRecoil_d", &xRecoil_d, "xRecoil_d/D");
tree->Branch("yRecoil_d", &yRecoil_d, "yRecoil_d/D");
tree->Branch("rhoRecoil_d", &rhoRecoil_d, "rhoRecoil_d/D");
tree->Branch("Td", &Td, "Td/D");
}
double xArray, yArray, rhoArray; ///x, y, rho positon of particle-b on PSD
tree->Branch("xArray", &xArray, "xArray/D");
tree->Branch("yArray", &yArray, "yArray/D");
tree->Branch("rhoArray", &rhoArray, "rhoArray/D");
double xRecoil, yRecoil, rhoRecoil; /// x, y, rho position of particle-B on recoil-detector
tree->Branch("xRecoil", &xRecoil, "xRecoil/D");
tree->Branch("yRecoil", &yRecoil, "yRecoil/D");
tree->Branch("rhoRecoil", &rhoRecoil, "rhoRecoil/D");
///in case need ELUM
double xElum1, yElum1, rhoElum1;
if( aux.elumPos1 != 0 ) {
tree->Branch("xElum1", &xElum1, "xElum1/D");
tree->Branch("yElum1", &yElum1, "yElum1/D");
tree->Branch("rhoElum1", &rhoElum1, "rhoElum1/D");
}
double xElum2, yElum2, rhoElum2;
if( aux.elumPos2 != 0 ) {
tree->Branch("xElum2", &xElum2, "xElum2/D");
tree->Branch("yElum2", &yElum2, "yElum2/D");
tree->Branch("rhoElum2", &rhoElum2, "rhoElum2/D");
}
///in case need other recoil detector.
double xRecoil1, yRecoil1, rhoRecoil1;
if( aux.detPos1 != 0 ){
tree->Branch("xRecoil1", &xRecoil1, "xRecoil1/D");
tree->Branch("yRecoil1", &yRecoil1, "yRecoil1/D");
tree->Branch("rhoRecoil1", &rhoRecoil1, "rhoRecoil1/D");
}
double xRecoil2, yRecoil2, rhoRecoil2;
if( aux.detPos2 != 0 ){
tree->Branch("xRecoil2", &xRecoil2, "xRecoil2/D");
tree->Branch("yRecoil2", &yRecoil2, "yRecoil2/D");
tree->Branch("rhoRecoil2", &rhoRecoil2, "rhoRecoil2/D");
}
//======= function for e-z plot for ideal case
printf("++++ generate functions\n");
TObjArray * gList = new TObjArray();
gList->SetName("Constant thetaCM lines");
const int gxSize = 50;
TF1 ** gx = new TF1*[gxSize];
TString name;
double mb = transfer.GetMass_b();
double betaRect = transfer.GetReactionBeta();
double gamma = transfer.GetReactionGamma();
double slope = transfer.GetEZSlope(helios.GetBField()); /// MeV/mm
for( int i = 0; i < gxSize; i++){
name.Form("g%d", i);
gx[i] = new TF1(name, "([0]*TMath::Sqrt([1]+[2]*x*x)+[5]*x)/([3]) - [4]", -1000, 1000);
double thetacm = i * TMath::DegToRad();
double gS2 = TMath::Power(TMath::Sin(thetacm)*gamma,2);
gx[i]->SetParameter(0, TMath::Cos(thetacm));
gx[i]->SetParameter(1, mb*mb*(1-gS2));
gx[i]->SetParameter(2, TMath::Power(slope/betaRect,2));
gx[i]->SetParameter(3, 1-gS2);
gx[i]->SetParameter(4, mb);
gx[i]->SetParameter(5, -gS2*slope);
gx[i]->SetNpx(1000);
gList->Add(gx[i]);
printf("/");
if( i > 1 && i % 40 == 0 ) printf("\n");
}
gList->Write("EZ_thetaCM", TObject::kSingleKey);
printf(" %d constant thetaCM functions\n", gxSize);
//--- cal modified f
TObjArray * fxList = new TObjArray();
TGraph ** fx = new TGraph*[numEx];
std::vector<double> px, py;
int countfx = 0;
for( int j = 0 ; j < numEx; j++){
double a = helios.GetDetRadius();
double q = TMath::Sqrt(mb*mb + kbCM[j] * kbCM[j] );
px.clear();
py.clear();
countfx = 0;
for(int i = 0; i < 100; i++){
double thetacm = TMath::Pi()/TMath::Log(100) * (TMath::Log(100) - TMath::Log(100-i)) ;//using log scale, for more point in small angle.
double temp = TMath::TwoPi() * slope / betaRect / kbCM[j] * a / TMath::Sin(thetacm);
double pxTemp = betaRect /slope * (gamma * betaRect * q - gamma * kbCM[j] * TMath::Cos(thetacm)) * (1 - TMath::ASin(temp)/TMath::TwoPi()) ;
double pyTemp = gamma * q - mb - gamma * betaRect * kbCM[j] * TMath::Cos(thetacm);
if( TMath::IsNaN(pxTemp) || TMath::IsNaN(pyTemp) ) continue;
px.push_back(pxTemp);
py.push_back(pyTemp);
countfx ++;
}
fx[j] = new TGraph(countfx, &px[0], &py[0]);
name.Form("fx%d", j);
fx[j]->SetName(name);
fx[j]->SetLineColor(4);
fxList->Add(fx[j]);
printf(",");
}
fxList->Write("EZCurve", TObject::kSingleKey);
printf(" %d e-z finite-size detector functions\n", numEx);
//--- cal modified thetaCM vs z
TObjArray * txList = new TObjArray();
TGraph ** tx = new TGraph*[numEx];
for( int j = 0 ; j < numEx; j++){
double a = helios.GetDetRadius();
double q = TMath::Sqrt(mb*mb + kbCM[j] * kbCM[j] );
px.clear();
py.clear();
countfx = 0;
for(int i = 0; i < 100; i++){
double thetacm = (i + 8.) * TMath::DegToRad();
double temp = TMath::TwoPi() * slope / betaRect / kbCM[j] * a / TMath::Sin(thetacm);
double pxTemp = betaRect /slope * (gamma * betaRect * q - gamma * kbCM[j] * TMath::Cos(thetacm)) * (1 - TMath::ASin(temp)/TMath::TwoPi());
double pyTemp = thetacm * TMath::RadToDeg();
if( TMath::IsNaN(pxTemp) || TMath::IsNaN(pyTemp) ) continue;
px.push_back(pxTemp);
py.push_back(pyTemp);
countfx ++;
}
tx[j] = new TGraph(countfx, &px[0], &py[0]);
name.Form("tx%d", j);
tx[j]->SetName(name);
tx[j]->SetLineColor(4);
txList->Add(tx[j]);
printf("*");
}
txList->Write("thetaCM_Z", TObject::kSingleKey);
printf(" %d thetaCM-z for finite-size detector functions\n", numEx);
//========timer
TBenchmark clock;
bool shown ;
clock.Reset();
clock.Start("timer");
shown = false;
//change the number of event into human easy-to-read form
int numEvent = reactConfig.numEvents;
int digitLen = TMath::Floor(TMath::Log10(numEvent));
TString numEventStr;
if( 3 <= digitLen && digitLen < 6 ){
numEventStr.Form("%5.1f kilo", numEvent/1000.);
}else if ( 6<= digitLen && digitLen < 9 ){
numEventStr.Form("%6.2f million", numEvent/1e6);
}else if ( 9<= digitLen ){
numEventStr.Form("%6.2f billion", numEvent/1e9);
}
printf("\e[32m#################################### generating %s events \e[0m\n", numEventStr.Data());
double KEA = reactConfig.beamEnergy;
double theta = reactConfig.beamTheta;
double phi = 0.0;
//*====================================================== calculate event
int count = 0;
for( int i = 0; i < numEvent; i++){
bool redoFlag = true;
if( !reactConfig.isRedo ) redoFlag = false;
do{
//==== Set Ex of B
if( numEx == 1 ) {
ExID = 0;
Ex = exList.ExList[0].Ex + (exList.ExList[0].sigma == 0 ? 0 : gRandom->Gaus(0, exList.ExList[0].sigma));
}else{
ExID = exDist->GetRandom();
Ex = exList.ExList[ExID].Ex + (exList.ExList[ExID].sigma == 0 ? 0 : gRandom->Gaus(0, exList.ExList[ExID].sigma));
}
transfer.SetExB(Ex);
//==== Set incident beam
if( reactConfig.beamEnergySigma != 0 ){
KEA = gRandom->Gaus(reactConfig.beamEnergy, reactConfig.beamEnergySigma);
}
if( reactConfig.beamThetaSigma != 0 ){
theta = gRandom->Gaus(reactConfig.beamTheta, reactConfig.beamThetaSigma);
}
//==== for taregt scattering
transfer.SetIncidentEnergyAngle(KEA, theta, 0.);
transfer.CalReactionConstant();
// TLorentzVector PA = transfer.GetPA();
//depth = 0;
// if( isTargetScattering ){
// //==== Target scattering, only energy loss
// depth = targetThickness * gRandom->Rndm();
// msA.SetTarget(density, depth);
// TLorentzVector PAnew = msA.Scattering(PA);
// KEAnew = msA.GetKE()/reactConfig.beamA;
// transfer.SetIncidentEnergyAngle(KEAnew, theta, phi);
// transfer.CalReactionConstant();
// Ecm = transfer.GetCMTotalKE();
// }
//==== Calculate thetaCM, phiCM
if( distFile->IsOpen()){
dist = (TF1 *) distList->At(ExID);
thetaCM = dist->GetRandom() / 180. * TMath::Pi();
}else{
thetaCM = TMath::ACos(2 * gRandom->Rndm() - 1) ;
}
double phiCM = TMath::TwoPi() * gRandom->Rndm();
//==== Calculate reaction
transfer.Event(thetaCM, phiCM);
TLorentzVector Pb = transfer.GetPb();
TLorentzVector PB = transfer.GetPB();
// //==== Calculate energy loss of scattered and recoil in target
// if( isTargetScattering ){
// if( Pb.Theta() < TMath::PiOver2() ){
// msb.SetTarget(density, targetThickness - depth);
// }else{
// msb.SetTarget(density, depth);
// }
// Pb = msb.Scattering(Pb);
// TbLoss = msb.GetKELoss();
// msB.SetTarget(density, targetThickness - depth);
// PB = msB.Scattering(PB);
// }else{
// TbLoss = 0;
// }
//======= Decay of particle-B
int decayID = 0;
if( recoil.isDecay){
decayID = decay.CalDecay(PB, Ex, 0, phiCM + TMath::Pi()/2); // decay to ground state
if( decayID == 1 ){
PB = decay.GetDaugther_D();
//decayTheta = decay.GetAngleChange();
decayTheta = decay.GetThetaCM();
PB.SetUniqueID(recoil.decayZ);
}else{
decayTheta = TMath::QuietNaN();
}
}
//################################### tree branches
//===== reaction
thetab = Pb.Theta() * TMath::RadToDeg();
thetaB = PB.Theta() * TMath::RadToDeg();
Tb = Pb.E() - Pb.M();
TB = PB.E() - PB.M();
phib = Pb.Phi() * TMath::RadToDeg();
phiB = PB.Phi() * TMath::RadToDeg();
//==== Helios
// printf(" thetaCM : %f, Tb : %f\n", thetaCM * TMath::RadToDeg(), Pb.M());
if( Tb > 0 || TB > 0 ){
helios.CalArrayHit(Pb);
helios.CalRecoilHit(PB);
hit = 2;
while( hit > 1 ){ hit = helios.CheckDetAcceptance(); } /// while hit > 1, goto next loop;
trajectory orb_b = helios.GetTrajectory_b();
trajectory orb_B = helios.GetTrajectory_B();
e = helios.GetEnergy() + gRandom->Gaus(0, array.eSigma );
double ranX = gRandom->Gaus(0, array.zSigma);
z = orb_b.z + ranX;
detX = helios.GetDetX() + ranX;
z0 = orb_b.z0;
t = orb_b.t;
loop = orb_b.loop;
detID = orb_b.detID;
detRowID = orb_b.detRowID;
rho = orb_b.rho;
rhoArray = orb_b.R;
xArray = orb_b.x;
yArray = orb_b.y;
//ELUM
if( aux.elumPos1 != 0 ){
xElum1 = helios.GetXPos(aux.elumPos1);
yElum1 = helios.GetYPos(aux.elumPos1);
rhoElum1 = helios.GetR(aux.elumPos1);
}
if( aux.elumPos2 != 0 ){
xElum2 = helios.GetXPos(aux.elumPos2);
yElum2 = helios.GetYPos(aux.elumPos2);
rhoElum2 = helios.GetR(aux.elumPos2);
}
//Recoil
rhoRecoil = orb_B.R;
tB = orb_B.t;
xRecoil = orb_B.x;
yRecoil = orb_B.y;
rhoB = orb_B.rho;
//other recoil detectors
if ( aux.detPos1 != 0 ){
xRecoil1 = helios.GetRecoilXPos(aux.detPos1);
yRecoil1 = helios.GetRecoilYPos(aux.detPos1);
rhoRecoil1 = helios.GetRecoilR(aux.detPos1);
}
if ( aux.detPos2 != 0 ){
xRecoil2 = helios.GetRecoilXPos(aux.detPos2);
yRecoil2 = helios.GetRecoilYPos(aux.detPos2);
rhoRecoil2 = helios.GetRecoilR(aux.detPos2);
}
std::pair<double,double> ExThetaCM = transfer.CalExThetaCM(e, z, helios.GetBField(), helios.GetDetRadius());
ExCal = ExThetaCM.first;
thetaCMCal = ExThetaCM.second;
//change thetaCM into deg
thetaCM = thetaCM * TMath::RadToDeg();
//if decay, get the light decay particle on the recoil;
if( recoil.isDecay ){
if( decayID == 1 ){
TLorentzVector Pd = decay.GetDaugther_d();
Td = Pd.E() - Pd.M();
helios.CalRecoilHit(Pd);
trajectory orb_d = helios.GetTrajectory_B();
rhoRecoil_d = orb_d.R;
xRecoil_d = orb_d.x;
yRecoil_d = orb_d.y;
}else{
rhoRecoil_d = TMath::QuietNaN();
xRecoil_d = TMath::QuietNaN();
yRecoil_d = TMath::QuietNaN();
}
}
}else{
hit = -404;
}
if( hit == 1) count ++;
if( reactConfig.isRedo ){
if( hit == 1) {
redoFlag = false;
}else{
redoFlag = true;
//printf("%d, %2d, thetaCM : %f, theta : %f, z0: %f \n", i, hit, thetaCM * TMath::RadToDeg(), thetab, helios.GetZ0());
}
}else{
redoFlag = false;
}
}while( redoFlag );
tree->Fill();
//#################################################################### Timer
clock.Stop("timer");
Double_t time = clock.GetRealTime("timer");
clock.Start("timer");
if ( !shown ) {
if (fmod(time, 10) < 1 ){
printf( "%10d[%2d%%]| %8.2f sec | expect: %5.1f min \n", i, TMath::Nint((i+1)*100./numEvent), time , numEvent*time/(i+1)/60);
shown = 1;
}
}else{
if (fmod(time, 10) > 9 ){
shown = 0;
}
}
}
saveFile->Write();
saveFile->Close();
distFile->Close();
delete exDist;
printf("=============== done. saved as %s. count(hit==1) : %d\n", saveFileName.Data(), count);
//gROOT->ProcessLine(".q");
return;
}
int main (int argc, char *argv[]) {
printf("=================================================================\n");
printf("========== Simulate Transfer reaction in HELIOS ==========\n");
printf("=================================================================\n");
if(argc == 2 || argc > 7) {
printf("Usage: ./Transfer [1] [2] [3] [4] [5] [6]\n");
printf(" default file name \n");
printf(" [1] reactionConfig.txt (input) reaction Setting \n");
printf(" [2] detectorGeo.txt (input) detector Setting \n");
printf(" [3] ID (input) detector & reaction ID (default = 0 ) \n");
printf(" [4] DWBA.root (input) thetaCM distribution from DWBA \n");
printf(" [5] transfer.root (output) rootFile name for output \n");
printf(" [6] plot (input) will it plot stuffs [1/0] \n");
printf("------------------------------------------------------\n");
return 0 ;
}
std::string basicConfig = "reactionConfig.txt";
std::string heliosDetGeoFile = "detectorGeo.txt";
int ID = 0;
TString ptolemyRoot = "DWBA.root"; // when no file, use isotropic distribution of thetaCM
TString saveFileName; // format based on ID;
bool isPlot = false;
if( argc >= 2) basicConfig = argv[1];
if( argc >= 3) heliosDetGeoFile = argv[2];
if( argc >= 4) ID = atoi(argv[3]);
if( argc >= 5) ptolemyRoot = argv[4];
if( argc >= 6) saveFileName = argv[5];
if( argc >= 7) isPlot = atoi(argv[7]);
saveFileName = Form("transfer_%d.root", ID);
Transfer( basicConfig, heliosDetGeoFile, ID, ptolemyRoot, saveFileName);
//run Armory/Check_Simulation
if( isPlot ){
std::ifstream file_in;
file_in.open("../Cleopatra/Check_Simulation.C", std::ios::in);
if( file_in){
printf("---- running ../Cleopatra/Check_Simulation.C on %s \n", saveFileName.Data());
TString cmd;
cmd.Form("root -l '../Cleopatra/Check_Simulation.C(\"%s\")'", saveFileName.Data());
system(cmd.Data());
}else{
printf("cannot find ../Cleopatra/Check_Simulation.C \n");
}
}
}

240
Cleopatra/SimulationChecker.C
View File

@ -1,240 +0,0 @@
#include "TString.h"
#include "TFile.h"
#include "TTree.h"
#include "TH2.h"
#include "TStyle.h"
#include "TCanvas.h"
#include "TArc.h"
#include "TLine.h"
#include "TLatex.h"
#include "TMacro.h"
#include "../Armory/AnalysisLib.h"
#include "../Armory/ClassDetGeo.h"
#include "../Armory/ClassReactionConfig.h"
#include "../Cleopatra/ClassIsotope.h"
#include "../Cleopatra/ClassTransfer.h"
void SimulationChecker(TString transferRoot = "transfer.root"){
gStyle->SetOptStat("");
gStyle->SetStatY(0.9);
gStyle->SetStatX(0.9);
gStyle->SetStatW(0.4);
gStyle->SetStatH(0.2);
gStyle->SetLabelSize(0.05, "XY");
gStyle->SetTitleFontSize(0.1);
TFile * file = new TFile(transferRoot, "read");
TTree * tree = (TTree*) file->Get("tree");
TObjArray * fxList = (TObjArray *) file->FindObjectAny("EZCurve");
//*================================== List Of Reactions
TMacro * listOfReaction = (TMacro *) file->FindObjectAny("ListOfReactions");
int numReaction = listOfReaction->GetListOfLines()->GetSize();
std::vector<int> reactionIDList(numReaction, -1);
std::vector<TString> reactionNameList(numReaction, "");
for( int i = 0; i < numReaction; i++){
std::vector<std::string> tempStr = AnalysisLib::SplitStr(listOfReaction->GetListOfLines()->At(i)->GetName(), "|");
reactionIDList[i] = atoi(tempStr[0].c_str());
reactionNameList[i] = tempStr[1];
}
// for( int i = 0; i < numReaction; i++) printf("%2d | %s\n", reactionIDList[i], reactionNameList[i].Data());
//*================================== DWBA, if any
TMacro * dwbaReaction = (TMacro *) file->FindObjectAny("DWBA_ReactionList");
TMacro * dwbaExList = (TMacro *) file->FindObjectAny("DWBA_ExList");
// dwbaReaction->Print();
// dwbaExList->Print();
//*================================== reactionConfig
TMacro * reactionConfigTxt = (TMacro *) file->FindObjectAny("reactionConfig");
ReactionConfig reactionConfig(reactionConfigTxt);
int nEvent = reactionConfig.numEvents;
printf("number of events generated : %d \n", nEvent);
//=== clear the Ex in reactionCondig if DWBA_ReactionList
if( dwbaReaction || listOfReaction ){
for( int i = 0; i < numReaction; i ++){
reactionConfig.exList[reactionIDList[i]].Clear();
for( int j = 0; j < dwbaReaction->GetListOfLines()->GetSize(); j++){
std::vector<std::string> haha = AnalysisLib::SplitStr(dwbaReaction->GetListOfLines()->At(j)->GetName(), "|");
if( atoi(haha[1].c_str()) == reactionIDList[i] ) {
std::vector<std::string> dudu = AnalysisLib::SplitStr(dwbaExList->GetListOfLines()->At(j+1)->GetName(), " ");
reactionConfig.exList[reactionIDList[i]].Add(atof(dudu[0].c_str()), atof(dudu[1].c_str()), 1.0, 0.00);
}
}
reactionConfig.Print(reactionIDList[i]);
}
}
//*================================== detector Geometry
printf("=================================\n");
printf(" loading detector Geometry.\n");
TMacro * detGeoTxt = (TMacro *) file->FindObjectAny("detGeo");
DetGeo detGeo(detGeoTxt);
detGeo.Print(true);
printf("%f %f \n", detGeo.array[0].zMin, detGeo.array[0].zMax);
printf("=================================\n");
//*==================================
int padSize = 500;
int Div[2] = {5, numReaction};
Int_t size[2] = {padSize,padSize}; ///x,y, single Canvas size
TCanvas * cCheck = new TCanvas("cCheck", "Check For Simulation", 0, 0, size[0]*Div[0], size[1]*Div[1]);
if(cCheck->GetShowEditor() )cCheck->ToggleEditor();
if(cCheck->GetShowToolBar() )cCheck->ToggleToolBar();
cCheck->Divide(Div[0],Div[1]);
bool shownKELines = true;
TString gate = "hit == 1 && loop <= 1 && thetaCM > 10";
//^-------------------------------
cCheck->cd(1);
{
TH2F * hez = new TH2F("hez", Form("e-z [gated] @ %5.0f mm; z [mm]; e [MeV]", detGeo.array[0].firstPos),
400, detGeo.array[0].zMin, detGeo.array[0].zMax,
400, 0, 10);
tree->Draw("e:z>>hez", gate + " && rID == 0", "colz");
}
//^-------------------------------
cCheck->cd(2);
{
TH2F * hRecoilXY = new TH2F("hRecoilXY", Form("RecoilXY [gated] @ %4.0f mm; X [mm]; Y [mm]", detGeo.aux[0].detPos ),
400, -detGeo.aux[0].outerRadius, detGeo.aux[0].outerRadius,
400, -detGeo.aux[0].outerRadius, detGeo.aux[0].outerRadius);
tree->Draw("yRecoil:xRecoil>>hRecoilXY", gate + " && rID == 0", "colz");
TArc * detArc1 = new TArc(0,0, detGeo.aux[0].outerRadius);
detArc1->SetLineColor(kBlue-8);
detArc1->SetFillStyle(0);
detArc1->Draw("same");
TArc * detArc2 = new TArc(0,0, detGeo.aux[0].innerRadius);
detArc2->SetLineColor(kBlue-8);
detArc2->SetFillStyle(0);
detArc2->Draw("same");
if( reactionConfig.beamX != 0. || reactionConfig.beamY != 0. ){
TArc * arc = new TArc(reactionConfig.beamX, reactionConfig.beamY, 1);
arc->SetLineColor(2);
detArc1->SetFillStyle(0);
arc->Draw("same");
}
}
//^-------------------------------
cCheck->cd(3);
{
// TH1F * hThetaCM[numEx];
// TLegend * legend = new TLegend(0.8,0.2,0.99,0.8);
// double maxCount = 0;
// int startID = 0; // set the start ExID
// for( int i = startID; i < numEx; i++){
// hThetaCM[i] = new TH1F(Form("hThetaCM%d", i), Form("thetaCM [gated] (ExID=%d); thetaCM [deg]; count", i), 200, thetaCMRange[0], thetaCMRange[1]);
// hThetaCM[i]->SetLineColor(i+1-startID);
// hThetaCM[i]->SetFillColor(i+1-startID);
// hThetaCM[i]->SetFillStyle(3000+i-startID);
// tree->Draw(Form("thetaCM>>hThetaCM%d", i), gate + Form("&& ExID==%d", i), "");
// legend->AddEntry(hThetaCM[i], Form("Ex=%5.1f MeV", exList.ExList[i].Ex));
// double max = hThetaCM[i]->GetMaximum();
// if( max > maxCount ) maxCount = max;
// }
// for( int i = startID; i < numEx; i++){
// hThetaCM[i]->GetYaxis()->SetRangeUser(1, maxCount * 1.2);
// if( i == startID ) {
// hThetaCM[i]->Draw();
// }else{
// hThetaCM[i]->Draw("same");
// }
// }
// legend->Draw();
}
//^-------------------------------
cCheck->cd(4);
{
TLatex text;
text.SetNDC();
text.SetTextFont(82);
text.SetTextSize(0.06);
text.SetTextColor(2);
text.DrawLatex(0., 0.9, reactionNameList[0]);
text.DrawLatex(0., 0.8, detGeo.Bfield > 0 ? "out of plan" : "into plan");
text.SetTextColor(1);
text.DrawLatex(0., 0.7, "gate:");
text.SetTextColor(2);
//check gate text length, if > 30, break by "&&"
int ll = gate.Length();
if( ll > 30 ) {
std::vector<string> strList = AnalysisLib::SplitStr( (std::string) gate.Data(), "&&");
for( int i = 0; i < strList.size(); i++){
text.DrawLatex(0., 0.6 - 0.05*i, (TString) strList[i]);
}
}else{
text.DrawLatex(0., 0.6, gate);
}
if( reactionConfig.beamX != 0.0 || reactionConfig.beamY != 0.0 ){
text.DrawLatex(0.0, 0.1, Form("Bema pos: (%4.1f, %4.1f) mm", reactionConfig.beamX, reactionConfig.beamY));
}
}
//^-------------------------------
cCheck->cd(5);
{
TH1F * hExCal = new TH1F("hExCal", Form("calculated Ex [gated]; Ex [MeV]; count / %.2f keV", 10.), 400, -1, 3);
tree->Draw("ExCal>>hExCal", gate + " && rID == 0", "");
Isotope hRecoil(reactionConfig.recoil[0].heavyA, reactionConfig.recoil[0].heavyZ);
double Sn = hRecoil.CalSp(0,1);
double Sp = hRecoil.CalSp(1,0);
double Sa = hRecoil.CalSp2(4,2);
double S2n = hRecoil.CalSp(0, 2);
printf("Heavy recoil: %s \n", hRecoil.Name.c_str());
printf("Sn : %f MeV/u \n", Sn);
printf("Sp : %f MeV/u \n", Sp);
printf("Sa : %f MeV/u \n", Sa);
printf("S2n : %f MeV/u \n", S2n);
double yMax = hExCal->GetMaximum();
TLine * lineSn = new TLine(Sn, 0, Sn, yMax); lineSn->SetLineColor(2); lineSn->Draw("");
TLine * lineSp = new TLine(Sp, 0, Sp, yMax); lineSp->SetLineColor(4); lineSp->Draw("same");
TLine * lineSa = new TLine(Sa, 0, Sa, yMax); lineSa->SetLineColor(6); lineSa->Draw("same");
TLine * lineS2n = new TLine(S2n, 0, S2n, yMax); lineS2n->SetLineColor(8); lineS2n->Draw("same");
TLatex * text = new TLatex();
text->SetTextFont(82);
text->SetTextSize(0.06);
text->SetTextColor(2); text->DrawLatex(Sn, yMax*0.9, "S_{n}");
text->SetTextColor(4); text->DrawLatex(Sp, yMax*0.9, "S_{p}");
text->SetTextColor(6); text->DrawLatex(Sa, yMax*0.9, "S_{a}");
text->SetTextColor(8); text->DrawLatex(S2n, yMax*0.9, "S_{2n}");
}
cCheck->Modified();
cCheck->Update();
}

223
Cleopatra/SimHelper.C → Cleopatra/Simulation_Helper.C
View File

@ -5,7 +5,6 @@
#include <TGButton.h> #include <TGButton.h>
#include <TGLabel.h> #include <TGLabel.h>
#include <TGFrame.h> #include <TGFrame.h>
#include <TGComboBox.h>
#include <TGTextEditor.h> #include <TGTextEditor.h>
#include <TGNumberEntry.h> #include <TGNumberEntry.h>
#include <TGComboBox.h> #include <TGComboBox.h>
@ -13,13 +12,13 @@
#include <RQ_OBJECT.h> #include <RQ_OBJECT.h>
#include "../Cleopatra/SimTransfer.C" #include "../Cleopatra/Transfer.h"
#include "../Cleopatra/InFileCreator.h" #include "../Cleopatra/InFileCreator.h"
#include "../Cleopatra/ExtractXSec.h" #include "../Cleopatra/ExtractXSec.h"
#include "../Cleopatra/PlotTGraphTObjArray.h" #include "../Cleopatra/PlotTGraphTObjArray.h"
#include "../Armory/AutoFit.C" #include "../armory/AutoFit.C"
#include "../Armory/AnalysisLib.h" #include "../armory/AnalysisLib.h"
#include "../Cleopatra/SimChecker.C" #include "../Cleopatra/Check_Simulation.C"
#include <iostream> #include <iostream>
#include <stdexcept> #include <stdexcept>
@ -35,42 +34,45 @@
TString isoFileName; TString isoFileName;
class MyMainFrame { class MyMainFrame {
RQ_OBJECT("MyMainFrame") RQ_OBJECT("MyMainFrame")
private: private:
TGMainFrame *fMain; TGMainFrame *fMain;
TGTextEdit * editor; TGTextEdit * editor;
TString fileName; TString fileName;
TGLabel * fileLabel; TGLabel * fileLabel;
TGLabel * statusLabel; TGLabel * statusLabel;
TGNumberEntry * angMin; TGNumberEntry * angMin;
TGNumberEntry * angMax; TGNumberEntry * angMax;
TGNumberEntry * angStep; TGNumberEntry * angStep;
TGCheckButton * withDWBA; TGCheckButton * withDWBA;
TGCheckButton * isInFile; TGCheckButton * isInFile;
TGCheckButton * isRun; TGCheckButton * isRun;
TGCheckButton * isExtract; TGCheckButton * isExtract;
TGCheckButton * isPlot; TGCheckButton * isPlot;
TGComboBox * extractFlag; TGComboBox * extractFlag;
TGTextEntry * txtName ;
TGTextEntry * txtEx ; TGTextEntry * txtName ;
TGTextEntry * txtEx ;
bool isUse2ndArray;
public: public:
MyMainFrame(const TGWindow *p,UInt_t w,UInt_t h); MyMainFrame(const TGWindow *p,UInt_t w,UInt_t h);
virtual ~MyMainFrame(); virtual ~MyMainFrame();
void Command(int); void Command(int);
void OpenFile(int); void OpenFile(int);
void GetData(); void GetData();
bool IsFileExist(TString filename); bool IsFileExist(TString filename);
void CheckIsUse2ndArray();
}; };
@ -84,7 +86,7 @@ MyMainFrame::MyMainFrame(const TGWindow *p,UInt_t w,UInt_t h) {
TGVerticalFrame *hframe1 = new TGVerticalFrame(fMain,600,600 ); TGVerticalFrame *hframe1 = new TGVerticalFrame(fMain,600,600 );
hframe->AddFrame(hframe1); hframe->AddFrame(hframe1);
TGVerticalFrame *hframe2 = new TGVerticalFrame(fMain,600,1000 ); TGVerticalFrame *hframe2 = new TGVerticalFrame(fMain,600,800 );
hframe->AddFrame(hframe2,new TGLayoutHints( kLHintsExpandX | kLHintsExpandY, 2,2,2,2)); hframe->AddFrame(hframe2,new TGLayoutHints( kLHintsExpandX | kLHintsExpandY, 2,2,2,2));
fileName = "../working/detectorGeo.txt"; fileName = "../working/detectorGeo.txt";
@ -143,11 +145,18 @@ MyMainFrame::MyMainFrame(const TGWindow *p,UInt_t w,UInt_t h) {
openRec->ChangeOptions( openRec->GetOptions() | kFixedSize ); openRec->ChangeOptions( openRec->GetOptions() | kFixedSize );
openRec->Connect("Clicked()","MyMainFrame",this, "OpenFile(=1)"); openRec->Connect("Clicked()","MyMainFrame",this, "OpenFile(=1)");
simFrame->AddFrame(openRec,new TGLayoutHints(kLHintsRight, 5,5,3,4)); simFrame->AddFrame(openRec,new TGLayoutHints(kLHintsRight, 5,5,3,4));
TGTextButton *openEx = new TGTextButton(simFrame, "Ex List");
openEx->SetWidth(150);
openEx->SetHeight(20);
openEx->ChangeOptions( openEx->GetOptions() | kFixedSize );
openEx->Connect("Clicked()","MyMainFrame",this, "OpenFile(=2)");
simFrame->AddFrame(openEx,new TGLayoutHints(kLHintsRight, 5,5,3,4));
withDWBA = new TGCheckButton(simFrame, "Sim with DWBA"); withDWBA = new TGCheckButton(simFrame, "Sim with DWBA\n+DWBA.root\n+DWBA.Ex.txt");
withDWBA->SetWidth(140); withDWBA->SetWidth(140);
withDWBA->ChangeOptions(kFixedSize ); withDWBA->ChangeOptions(kFixedSize );
simFrame->AddFrame(withDWBA, new TGLayoutHints(kLHintsRight, 5,5,3,4)); simFrame->AddFrame(withDWBA, new TGLayoutHints(kLHintsLeft, 5,5,3,4));
TGTextButton *Sim = new TGTextButton(simFrame,"Simulate"); TGTextButton *Sim = new TGTextButton(simFrame,"Simulate");
Sim->SetWidth(150); Sim->SetWidth(150);
@ -288,32 +297,32 @@ MyMainFrame::MyMainFrame(const TGWindow *p,UInt_t w,UInt_t h) {
} }
// {//====================== Nuclear data API {//====================== Nuclear data API
// TGGroupFrame * dataFrame = new TGGroupFrame(hframe1, "Nuclear Data", kVerticalFrame); TGGroupFrame * dataFrame = new TGGroupFrame(hframe1, "Nuclear Data", kVerticalFrame);
// hframe1->AddFrame(dataFrame, new TGLayoutHints(kLHintsCenterX, 5,5,3,4)); hframe1->AddFrame(dataFrame, new TGLayoutHints(kLHintsCenterX, 5,5,3,4));
// TGHorizontalFrame * hfData = new TGHorizontalFrame(dataFrame); dataFrame->AddFrame(hfData, new TGLayoutHints(kLHintsNormal, 0, 0, 5, 0)); TGHorizontalFrame * hfData = new TGHorizontalFrame(dataFrame); dataFrame->AddFrame(hfData, new TGLayoutHints(kLHintsNormal, 0, 0, 5, 0));
// TGVerticalFrame * vfLabel = new TGVerticalFrame(hfData, 200); hfData->AddFrame(vfLabel ); TGVerticalFrame * vfLabel = new TGVerticalFrame(hfData, 200); hfData->AddFrame(vfLabel );
// TGVerticalFrame * vfTxt = new TGVerticalFrame(hfData); hfData->AddFrame(vfTxt); TGVerticalFrame * vfTxt = new TGVerticalFrame(hfData); hfData->AddFrame(vfTxt);
// TGLayoutHints * haha = new TGLayoutHints(kLHintsRight | kLHintsCenterY, 5,5,5,2); TGLayoutHints * haha = new TGLayoutHints(kLHintsRight | kLHintsCenterY, 5,5,5,2);
// TGLayoutHints * kaka = new TGLayoutHints(kLHintsLeft | kLHintsCenterY, 5,5,0,0); TGLayoutHints * kaka = new TGLayoutHints(kLHintsLeft | kLHintsCenterY, 5,5,0,0);
// TGLabel * lb1 = new TGLabel(vfLabel, "Nuclear Name :"); vfLabel->AddFrame(lb1, haha); TGLabel * lb1 = new TGLabel(vfLabel, "Nuclear Name :"); vfLabel->AddFrame(lb1, haha);
// TGLabel * lb2 = new TGLabel(vfLabel, "Max Ex [MeV] :"); vfLabel->AddFrame(lb2, haha); TGLabel * lb2 = new TGLabel(vfLabel, "Max Ex [MeV] :"); vfLabel->AddFrame(lb2, haha);
// txtName = new TGTextEntry(vfTxt, "25F"); vfTxt->AddFrame(txtName, kaka); txtName->Resize(50, 20); txtName = new TGTextEntry(vfTxt, "25F"); vfTxt->AddFrame(txtName, kaka); txtName->Resize(50, 20);
// txtEx = new TGTextEntry(vfTxt, "0"); vfTxt->AddFrame(txtEx, kaka); txtEx->Resize(50, 20); txtEx = new TGTextEntry(vfTxt, "0"); vfTxt->AddFrame(txtEx, kaka); txtEx->Resize(50, 20);
// TGTextButton *GetData = new TGTextButton(dataFrame, "Get Data"); TGTextButton *GetData = new TGTextButton(dataFrame, "Get Data");
// GetData->SetWidth(150); GetData->SetWidth(150);
// GetData->SetHeight(40); GetData->SetHeight(40);
// GetData->ChangeOptions( GetData->GetOptions() | kFixedSize ); GetData->ChangeOptions( GetData->GetOptions() | kFixedSize );
// GetData->Connect("Clicked()","MyMainFrame",this,"GetData()"); GetData->Connect("Clicked()","MyMainFrame",this,"GetData()");
// dataFrame->AddFrame(GetData,new TGLayoutHints(kLHintsRight, 5,5,3,4)); dataFrame->AddFrame(GetData,new TGLayoutHints(kLHintsRight, 5,5,3,4));
// } }
TGTextButton *exit = new TGTextButton(hframe1,"Exit", "gApplication->Terminate(0)"); TGTextButton *exit = new TGTextButton(hframe1,"Exit", "gApplication->Terminate(0)");
exit->SetWidth(150); exit->SetWidth(150);
@ -347,6 +356,14 @@ bool MyMainFrame::IsFileExist(TString filename){
return file.is_open(); return file.is_open();
} }
void MyMainFrame::CheckIsUse2ndArray(){
TMacro * haha = new TMacro("../working/detectorGeo.txt");
AnalysisLib::DetGeo detGeo = AnalysisLib::LoadDetectorGeo(haha);
delete haha;
isUse2ndArray = detGeo.use2ndArray;
}
void MyMainFrame::OpenFile(int ID){ void MyMainFrame::OpenFile(int ID){
@ -356,13 +373,23 @@ void MyMainFrame::OpenFile(int ID){
if ( ID == 0 ) fileName = "../working/detectorGeo.txt"; if ( ID == 0 ) fileName = "../working/detectorGeo.txt";
if ( ID == 1 ) fileName = "../working/reactionConfig.txt"; CheckIsUse2ndArray();
if ( ID == 3 ) fileName = "../working/DWBA"; if( isUse2ndArray){
if ( ID == 5 ) fileName = "../working/DWBA.in"; if ( ID == 1 ) fileName = "../working/reactionConfig2.txt";
if ( ID == 6 ) fileName = "../working/DWBA.out"; if ( ID == 2 ) fileName = "../working/Ex2.txt";
if ( ID == 7 ) fileName = "../working/DWBA.Xsec.txt"; if ( ID == 3 ) fileName = "../working/DWBA2";
if ( ID == 5 ) fileName = "../working/DWBA2.in";
if ( ID == 4 ) fileName = "../working/SimCheckerConfig.txt"; if ( ID == 6 ) fileName = "../working/DWBA2.out";
if ( ID == 7 ) fileName = "../working/DWBA2.Xsec.txt";
}else{
if ( ID == 1 ) fileName = "../working/reactionConfig1.txt";
if ( ID == 2 ) fileName = "../working/Ex1.txt";
if ( ID == 3 ) fileName = "../working/DWBA1";
if ( ID == 5 ) fileName = "../working/DWBA1.in";
if ( ID == 6 ) fileName = "../working/DWBA1.out";
if ( ID == 7 ) fileName = "../working/DWBA1.Xsec.txt";
}
if ( ID == 4 ) fileName = "../working/Check_Simulation_Config.txt";
if ( ID == 8 ) fileName = isoFileName; if ( ID == 8 ) fileName = isoFileName;
//test if file exist //test if file exist
@ -415,6 +442,8 @@ void MyMainFrame::Command(int ID) {
editor->SaveFile(fileName); editor->SaveFile(fileName);
CheckIsUse2ndArray();
if( ID == 0 ){ if( ID == 0 ){
if( isInFile->GetState()) { if( isInFile->GetState()) {
@ -466,46 +495,61 @@ void MyMainFrame::Command(int ID) {
if( ID == 1 ){ if( ID == 1 ){
string basicConfig = "reactionConfig.txt"; string basicConfig = "reactionConfig1.txt";
string heliosDetGeoFile = "detectorGeo.txt"; string heliosDetGeoFile = "detectorGeo.txt";
string excitationFile = "Ex1.txt"; //when no file, only ground state
TString ptolemyRoot = ""; // when no file, use isotropic distribution of thetaCM TString ptolemyRoot = ""; // when no file, use isotropic distribution of thetaCM
TString saveFileName = "transfer.root"; TString saveFileName = "transfer1.root";
TString filename = "reaction1.dat"; //when no file, no output
if( withDWBA->GetState() ) { if( withDWBA->GetState() ) {
ptolemyRoot = "DWBA.root"; ptolemyRoot = "DWBA1.root";
excitationFile = "DWBA1.Ex.txt";
} }
basicConfig = "reactionConfig.txt"; if( isUse2ndArray ){
heliosDetGeoFile = "detectorGeo.txt"; basicConfig = "reactionConfig2.txt";
ptolemyRoot = ""; // when no file, use isotropic distribution of thetaCM heliosDetGeoFile = "detectorGeo.txt";
saveFileName = "transfer.root"; excitationFile = "Ex2.txt"; //when no file, only ground state
ptolemyRoot = ""; // when no file, use isotropic distribution of thetaCM
if( withDWBA->GetState() ) { saveFileName = "transfer2.root";
ptolemyRoot = "DWBA.root"; filename = "reaction2.dat"; //when no file, no output
if( withDWBA->GetState() ) {
ptolemyRoot = "DWBA2.root";
excitationFile = "DWBA2.Ex.txt";
}
} }
statusLabel->SetText("Running simulation......."); statusLabel->SetText("Running simulation.......");
Transfer( basicConfig, heliosDetGeoFile, ptolemyRoot, saveFileName); Transfer( basicConfig, heliosDetGeoFile, excitationFile, ptolemyRoot, saveFileName, filename);
statusLabel->SetText("Plotting simulation......."); statusLabel->SetText("Plotting simulation.......");
SimChecker("transfer.root"); if( isUse2ndArray ){
Check_Simulation("transfer2.root");
}else{
Check_Simulation("transfer1.root");
}
statusLabel->SetText("Plotted Simulation result"); statusLabel->SetText("Plotted Simulation result");
} }
if( ID == 2 ){ if( ID == 2 ){
SimChecker("transfer.root"); if( isUse2ndArray ){
Check_Simulation("transfer2.root");
}else{
Check_Simulation("transfer1.root");
}
statusLabel->SetText(" Run Simulation first."); statusLabel->SetText(" Run Simulation first.");
} }
if( ID == 3 ){ if( ID == 3 ){
if( fileName != "" ){ if( fileName != "" ){
statusLabel->SetText(fileName + " saved."); statusLabel->SetText(fileName + " saved.");
}else{ }else{
statusLabel->SetText("cannot save HELP page."); statusLabel->SetText("cannot save HELP page.");
} }
} }
if( ID == 4 ){ if( ID == 4 ){
@ -570,14 +614,13 @@ void MyMainFrame::Command(int ID) {
if( ID == 5) { if( ID == 5) {
//TODO fit all hExCal TH1F * temp = (TH1F*) gROOT->FindObjectAny("hExCal");
TH1F * temp = (TH1F*) gROOT->FindObjectAny("hExCal0");
if( temp != NULL ){ if( temp != NULL ){
AutoFit::fitAuto(temp, -1); AutoFit::fitAuto(temp, -1);
statusLabel->SetText("Auto Fit hExCal"); statusLabel->SetText("Auto Fit hExCal");
}else{ }else{
statusLabel->SetText("Cannot find historgram hExCal0. Please Run Plot Simulation first."); statusLabel->SetText("Cannot find historgram hExCal. Please Run Plot Simulation first.");
} }
//gROOT->ProcessLine("fitAuto(hExCal, -1)"); //gROOT->ProcessLine("fitAuto(hExCal, -1)");
@ -593,7 +636,7 @@ MyMainFrame::~MyMainFrame() {
} }
void SimHelper() { void Simulation_Helper() {
new MyMainFrame(gClient->GetRoot(),800,1000); new MyMainFrame(gClient->GetRoot(),800,600);
} }

75
Cleopatra/Transfer.C Normal file
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@ -0,0 +1,75 @@
/***********************************************************************
*
* This is Transfer.C for simulation of transfer reaction.
*
* -----------------------------------------------------
* This program will call the root library and compile in g++
* compilation:
* g++ Transfer.C -o Transfer `root-config --cflags --glibs`
*
* ------------------------------------------------------
* created by Ryan (Tsz Leung) Tang, Feb-4, 2019
* email: goluckyryan@gmail.com
* ********************************************************************/
#include <fstream>
#include <stdlib.h>
#include "Transfer.h"
using namespace std;
int main (int argc, char *argv[]) {
printf("=================================================================\n");
printf("========== Simulate Transfer reaction in HELIOS ==========\n");
printf("=================================================================\n");
if(argc == 2 || argc > 8) {
printf("Usage: ./Transfer [1] [2] [3] [4] [5] [6] [7]\n");
printf(" default file name \n");
printf(" [1] reactionConfig.txt (input) reaction Setting \n");
printf(" [2] detectorGeo.txt (input) detector Setting \n");
printf(" [3] Ex.txt (input) Excitation energies \n");
printf(" [4] DWBA.root (input) thetaCM distribution from DWBA \n");
printf(" [5] transfer.root (output) rootFile name for output \n");
printf(" [6] reaction.dat (output) Key reaction parameters \n");
printf(" [7] plot (input) will it plot stuffs [1/0] \n");
printf("------------------------------------------------------\n");
return 0 ;
}
string basicConfig = "reactionConfig.txt";
string heliosDetGeoFile = "detectorGeo.txt";
string excitationFile = "Ex.txt"; //when no file, only ground state
TString ptolemyRoot = "DWBA.root"; // when no file, use isotropic distribution of thetaCM
TString saveFileName = "transfer.root";
TString filename = "reaction.dat"; //when no file, no output
bool isPlot = false;
if( argc >= 2) basicConfig = argv[1];
if( argc >= 3) heliosDetGeoFile = argv[2];
if( argc >= 4) excitationFile = argv[3];
if( argc >= 5) ptolemyRoot = argv[4];
if( argc >= 6) saveFileName = argv[5];
if( argc >= 7) filename = argv[6];
if( argc >= 8) isPlot = atoi(argv[7]);
Transfer( basicConfig, heliosDetGeoFile, excitationFile, ptolemyRoot, saveFileName, filename);
//run Armory/Check_Simulation
if( isPlot ){
ifstream file_in;
file_in.open("../Armory/Check_Simulation.C", ios::in);
if( file_in){
printf("---- running ../Armory/Check_Simulation.C on %s \n", saveFileName.Data());
TString cmd;
cmd.Form("root -l '../Armory/Check_Simulation.C(\"%s\", 500)'", saveFileName.Data());
system(cmd.Data());
}else{
printf("cannot find ../Armory/Check_Simulation.C \n");
}
}
}

722
Cleopatra/Transfer.h Normal file
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@ -0,0 +1,722 @@
#include "TROOT.h"
#include "TBenchmark.h"
#include "TLorentzVector.h"
#include "TMath.h"
#include "TFile.h"
#include "TF1.h"
#include "TTree.h"
#include "TRandom.h"
#include "TGraph.h"
#include "TMacro.h"
#include <stdlib.h>
#include <vector>
#include <fstream>
#include <TObjArray.h>
#include "HELIOS_LIB.h"
double exDistFunc(Double_t *x, Double_t * par){
return par[(int) x[0]];
}
void Transfer(
string basicConfig = "reactionConfig.txt",
string heliosDetGeoFile = "detectorGeo.txt",
string excitationFile = "Ex.txt", ///when no file, only ground state
TString ptolemyRoot = "DWBA.root", /// when no file, use isotropic distribution of thetaCM
TString saveFileName = "transfer.root",
TString filename = "reaction.dat"){ /// when no file, no output.
//############################################# Set Reaction
TransferReaction reaction;
reaction.SetReactionFromFile(basicConfig);
printf("*****************************************************************\n");
printf("*\e[1m\e[33m %27s \e[0m*\n", reaction.GetReactionName().Data());
printf("*****************************************************************\n");
printf("----- loading reaction setting from %s. \n", basicConfig.c_str());
printf("\e[32m#################################### Beam \e[0m\n");
const AnalysisLib::ReactionConfig reactionConfig = reaction.GetRectionConfig();
AnalysisLib::PrintReactionConfig(reactionConfig);
vector<float> ExAList = reactionConfig.beamEx;
int nExA = (int) ExAList.size();
//############################################# Set HELIOS
printf("\e[32m#################################### HELIOS configuration\e[0m\n");
HELIOS helios;
helios.SetDetectorGeometry(heliosDetGeoFile);
const AnalysisLib::DetGeo detGeo = helios.GetDetectorGeometry();
printf("==================================== E-Z plot slope\n");
double betaRect = reaction.GetReactionBeta() ;
double gamma = reaction.GetReactionGamma();
double mb = reaction.GetMass_b();
double pCM = reaction.GetMomentumbCM();
double q = TMath::Sqrt(mb*mb + pCM*pCM); ///energy of light recoil in center of mass
double slope = 299.792458 * reaction.GetCharge_b() * abs(helios.GetBField()) / TMath::TwoPi() * betaRect / 1000.; /// MeV/mm
printf(" e-z slope : %f MeV/mm\n", slope);
double intercept = q/gamma - mb; // MeV
printf(" e-z intercept (ground state) : %f MeV\n", intercept);
//############################################# save reaction.dat
if( filename != "" ) {
FILE * keyParaOut;
keyParaOut = fopen (filename.Data(), "w+");
printf("=========== save key reaction constants to %s \n", filename.Data());
fprintf(keyParaOut, "%-15.4f //%s\n", reaction.GetMass_b(), "mass_b");
fprintf(keyParaOut, "%-15d //%s\n", reaction.GetCharge_b(), "charge_b");
fprintf(keyParaOut, "%-15.8f //%s\n", reaction.GetReactionBeta(), "betaCM");
fprintf(keyParaOut, "%-15.4f //%s\n", reaction.GetCMTotalEnergy(), "Ecm");
fprintf(keyParaOut, "%-15.4f //%s\n", reaction.GetMass_B(), "mass_B");
fprintf(keyParaOut, "%-15.4f //%s\n", slope/betaRect, "alpha=slope/betaRect");
fflush(keyParaOut);
fclose(keyParaOut);
}
//############################################# Target scattering, only energy loss
bool isTargetScattering = reactionConfig.isTargetScattering;
float density = reactionConfig.targetDensity;
float targetThickness = reactionConfig.targetThickness;
if(isTargetScattering) printf("\e[32m#################################### Target Scattering\e[0m\n");
TargetScattering msA;
TargetScattering msB;
TargetScattering msb;
if(reactionConfig.isTargetScattering) printf("======== Target : (thickness : %6.2f um) x (density : %6.2f g/cm3) = %6.2f ug/cm2\n",
targetThickness * 1e+4,
density,
targetThickness * density * 1e+6);
if( reactionConfig.isTargetScattering ){
msA.LoadStoppingPower(reactionConfig.beamStoppingPowerFile);
msb.LoadStoppingPower(reactionConfig.recoilLightStoppingPowerFile);
msB.LoadStoppingPower(reactionConfig.recoilHeavyStoppingPowerFile);
}
//############################################# Decay of particle-B
Decay decay;
if(reactionConfig.isDecay) {
printf("\e[32m#################################### Decay\e[0m\n");
decay.SetMotherDaugther(reactionConfig.recoilHeavyA,
reactionConfig.recoilHeavyZ,
reactionConfig.heavyDecayA,
reactionConfig.heavyDecayZ);
}
//############################################# loading excitation energy
printf("\e[32m#################################### excitation energies\e[0m\n");
vector<double> ExKnown;
vector<double> ExStrength;
vector<double> ExWidth;
vector<double> SF;
vector<double> y0; /// intercept of e-z plot
vector<double> kCM; /// momentum of b in CM frame
printf("----- loading excitation energy levels (%s).", excitationFile.c_str());
ifstream file;
file.open(excitationFile.c_str());
string isotopeName;
if( file.is_open() ){
string line;
while( getline(file, line) ){
///printf("%s \n", line.c_str());
if( line.substr(0,2) == "//" ) continue;
if( line.substr(0,2) == "#=" ) break;
vector<string> str = AnalysisLib::SplitStr(line, " ");
ExKnown.push_back(atof(str[0].c_str()));
ExStrength.push_back(atof(str[1].c_str()));
SF.push_back(atof(str[2].c_str()));
ExWidth.push_back(atof(str[3].c_str()));
}
file.close();
printf("... done.\n");
int n = (int) ExKnown.size();
printf("%3s | %7s | %5s | %3s | %10s | %5s \n", "", "Ex[MeV]", "Xsec", "SF", "sigma[MeV]", "y0[MeV]");
printf("----+---------+------+-----+------------+--------\n");
for(int i = 0; i < n ; i++){
reaction.SetExB(ExKnown[i]);
reaction.CalReactionConstant();
kCM.push_back(reaction.GetMomentumbCM());
y0.push_back(TMath::Sqrt(mb*mb + kCM[i]*kCM[i])/gamma - mb);
if( reactionConfig.isDecay ) {
TLorentzVector temp(0,0,0,0);
int decayID = decay.CalDecay(temp, ExKnown[i], 0);
if( decayID == 1) {
printf("%3d | %7.2f | %5.2f | %3.1f | %5.3f | %5.2f --> Decay. \n", i, ExKnown[i], ExStrength[i], SF[i], ExWidth[i], y0[i]);
}else{
printf("%3d | %7.2f | %5.2f | %3.1f | %5.3f | %5.2f \n", i, ExKnown[i], ExStrength[i], SF[i], ExWidth[i], y0[i]);
}
}else{
printf("%3d | %7.2f | %5.2f | %3.1f | %5.3f | %5.2f \n", i, ExKnown[i], ExStrength[i], SF[i], ExWidth[i], y0[i]);
}
}
printf("----+---------+-------+-----+------------+--------\n");
}else{
printf("... fail ------> only ground state.\n");
ExKnown.push_back(0.0);
ExStrength.push_back(1.0);
ExWidth.push_back(0.0);
reaction.SetExB(ExKnown[0]);
reaction.CalReactionConstant();
kCM.push_back(reaction.GetMomentumbCM());
y0.push_back(TMath::Sqrt(mb*mb + kCM[0]*kCM[0])/gamma - mb);
}
//---- create Ex-distribution
TF1 * exDist = NULL;
if( ExKnown.size() > 1 ) {
printf("---- creating Ex-distribution \n");
int exSize = ExKnown.size();
exDist = new TF1("exDist", exDistFunc, 0, exSize, exSize);
for(int i = 0; i < exSize; i++){
exDist->SetParameter(i, ExStrength[i]*SF[i]);
}
}
//############################################# Load DWBAroot for thetaCM distribution
printf("\e[32m#################################### Load DWBA input : %s \e[0m\n", ptolemyRoot.Data());
TF1 * dist = NULL;
TFile * distFile = new TFile(ptolemyRoot, "read");
TObjArray * distList = NULL;
if( distFile->IsOpen() ) {
distList = (TObjArray *) distFile->FindObjectAny("pList"); // the function List
int distSize = distList->GetLast() + 1;
if( distSize != ExKnown.size() ) {
printf(" The number of distribution from Ptolmey Calculation is not equal to number of Ex input \n");
printf(" --> the Ptolmey calculation is probably not matched with Ex input.\n");
printf(" .... not use DWBA input. \n");
distFile->Close();
}
}else{
printf("------- no DWBA input. \n");
}
//############################################# build tree
printf("\e[32m#################################### building Tree in %s\e[0m\n", saveFileName.Data());
TFile * saveFile = new TFile(saveFileName, "recreate");
TTree * tree = new TTree("tree", "tree");
TMacro config(basicConfig.c_str());
TMacro detGeoTxt(heliosDetGeoFile.c_str());
TMacro exList(excitationFile.c_str());
TMacro reactionData(filename.Data());
double KEAmean = reactionConfig.beamEnergy;
TString str;
str.Form("%s @ %.2f MeV/u", reaction.GetReactionName_Latex().Data(), KEAmean);
config.SetName(str.Data());
config.Write("reactionConfig");
detGeoTxt.Write("detGeo");
exList.Write("ExList");
reactionData.Write("reactionData");
if( distList != NULL ) distList->Write("DWBA", 1);
TMacro hitMeaning;
str = "=======================meaning of Hit ID\n"; hitMeaning.AddLine(str.Data());
str = " 1 = light recoil hit array & heavy recoil hit recoil\n"; hitMeaning.AddLine(str.Data());
str = " 0 = no detector\n"; hitMeaning.AddLine(str.Data());
str = " -1 = light recoil go opposite side of array\n"; hitMeaning.AddLine(str.Data());
str = " -2 = light recoil hit > det width\n"; hitMeaning.AddLine(str.Data());
str = " -3 = light recoil hit > array \n"; hitMeaning.AddLine(str.Data());
str = " -4 = light recoil hit blocker \n"; hitMeaning.AddLine(str.Data());
str = " -10 = light recoil orbit radius too big \n"; hitMeaning.AddLine(str.Data());
str = " -11 = light recoil orbit radius too small\n"; hitMeaning.AddLine(str.Data());
str = " -12 = when reocol at the same side of array, light recoil blocked by recoil detector\n"; hitMeaning.AddLine(str.Data());
str = " -13 = more than 3 loops\n"; hitMeaning.AddLine(str.Data());
str = " -14 = heavy recoil did not hit recoil \n"; hitMeaning.AddLine(str.Data());
str = " -15 = cannot find hit on array\n"; hitMeaning.AddLine(str.Data());
str = " -20 = unknown\n"; hitMeaning.AddLine(str.Data());
str = "===========================================\n"; hitMeaning.AddLine(str.Data());
hitMeaning.Write("hitMeaning");
int hit; /// the output of Helios.CalHit
tree->Branch("hit", &hit, "hit/I");
double thetab, phib, Tb;
double thetaB, phiB, TB;
tree->Branch("thetab", &thetab, "thetab/D");
tree->Branch("phib", &phib, "phib/D");
tree->Branch("Tb", &Tb, "Tb/D");
tree->Branch("thetaB", &thetaB, "thetaB/D");
tree->Branch("phiB", &phiB, "phiB/D");
tree->Branch("TB", &TB, "TB/D");
double thetaCM;
tree->Branch("thetaCM", &thetaCM, "thetaCM/D");
double e, z, detX, t, z0, tB;
tree->Branch("e", &e, "energy_light/D");
tree->Branch("x", &detX, "detector_x/D");
tree->Branch("z", &z, "array_hit_z/D");
tree->Branch("z0", &z0, "z-cycle/D");
tree->Branch("t", &t, "cycle_time_light/D");
tree->Branch("tB", &tB, "recoil_hit_time/D"); /// hit time for recoil on the recoil detector
int loop, detID, detRowID;
tree->Branch("detID", &detID, "detID/I");
tree->Branch("detRowID", &detRowID, "detRowID/I");
tree->Branch("loop", &loop, "loop/I");
double rho, rhoB; ///orbit radius
tree->Branch("rho", &rho, "orbit_radius_light/D");
tree->Branch("rhoB", &rhoB, "orbit_radius_heavy/D");
int ExAID;
double ExA;
tree->Branch("ExAID", &ExAID, "ExAID/I");
tree->Branch("ExA", &ExA, "ExA/D");
int ExID;
double Ex;
tree->Branch("ExID", &ExID, "ExID/I");
tree->Branch("Ex", &Ex, "Ex/D");
double ExCal, thetaCMCal;
tree->Branch("ExCal", &ExCal, "ExCal/D");
tree->Branch("thetaCMCal", &thetaCMCal, "thetaCMCal/D");
double KEA, theta, phi;
tree->Branch("beamTheta", &theta, "beamTheta/D");
tree->Branch("beamPhi", &phi, "beamPhi/D");
tree->Branch("beamKEA", &KEA, "beamKEA/D");
double TbLoss; /// energy loss of particle-b from target scattering
double KEAnew; ///beam energy after target scattering
double depth; /// reaction depth;
double Ecm;
if( reactionConfig.isTargetScattering ){
tree->Branch("depth", &depth, "depth/D");
tree->Branch("TbLoss", &TbLoss, "TbLoss/D");
tree->Branch("KEAnew", &KEAnew, "KEAnew/D");
tree->Branch("Ecm", &Ecm, "Ecm/D");
}
double decayTheta; /// the change of thetaB due to decay
double xRecoil_d, yRecoil_d, rhoRecoil_d, Td;
if( reactionConfig.isDecay ) {
tree->Branch("decayTheta", &decayTheta, "decayTheta/D");
tree->Branch("xRecoil_d", &xRecoil_d, "xRecoil_d/D");
tree->Branch("yRecoil_d", &yRecoil_d, "yRecoil_d/D");
tree->Branch("rhoRecoil_d", &rhoRecoil_d, "rhoRecoil_d/D");
tree->Branch("Td", &Td, "Td/D");
}
double xArray, yArray, rhoArray; ///x, y, rho positon of particle-b on PSD
tree->Branch("xArray", &xArray, "xArray/D");
tree->Branch("yArray", &yArray, "yArray/D");
tree->Branch("rhoArray", &rhoArray, "rhoArray/D");
double xRecoil, yRecoil, rhoRecoil; /// x, y, rho position of particle-B on recoil-detector
tree->Branch("xRecoil", &xRecoil, "xRecoil/D");
tree->Branch("yRecoil", &yRecoil, "yRecoil/D");
tree->Branch("rhoRecoil", &rhoRecoil, "rhoRecoil/D");
///in case need ELUM
double xElum1, yElum1, rhoElum1;
if( detGeo.elumPos1 != 0 ) {
tree->Branch("xElum1", &xElum1, "xElum1/D");
tree->Branch("yElum1", &yElum1, "yElum1/D");
tree->Branch("rhoElum1", &rhoElum1, "rhoElum1/D");
}
double xElum2, yElum2, rhoElum2;
if( detGeo.elumPos2 != 0 ) {
tree->Branch("xElum2", &xElum2, "xElum2/D");
tree->Branch("yElum2", &yElum2, "yElum2/D");
tree->Branch("rhoElum2", &rhoElum2, "rhoElum2/D");
}
///in case need other recoil detector.
double xRecoil1, yRecoil1, rhoRecoil1;
if( detGeo.recoilPos1 != 0 ){
tree->Branch("xRecoil1", &xRecoil1, "xRecoil1/D");
tree->Branch("yRecoil1", &yRecoil1, "yRecoil1/D");
tree->Branch("rhoRecoil1", &rhoRecoil1, "rhoRecoil1/D");
}
double xRecoil2, yRecoil2, rhoRecoil2;
if( detGeo.recoilPos2 != 0 ){
tree->Branch("xRecoil2", &xRecoil2, "xRecoil2/D");
tree->Branch("yRecoil2", &yRecoil2, "yRecoil2/D");
tree->Branch("rhoRecoil2", &rhoRecoil2, "rhoRecoil2/D");
}
//======= function for e-z plot for ideal case
printf("++++ generate functions\n");
TObjArray * gList = new TObjArray();
gList->SetName("Constant thetaCM lines");
const int gxSize = 50;
TF1 ** gx = new TF1*[gxSize];
TString name;
for( int i = 0; i < gxSize; i++){
name.Form("g%d", i);
gx[i] = new TF1(name, "([0]*TMath::Sqrt([1]+[2]*x*x)+[5]*x)/([3]) - [4]", -1000, 1000);
double thetacm = i * TMath::DegToRad();
double gS2 = TMath::Power(TMath::Sin(thetacm)*gamma,2);
gx[i]->SetParameter(0, TMath::Cos(thetacm));
gx[i]->SetParameter(1, mb*mb*(1-gS2));
gx[i]->SetParameter(2, TMath::Power(slope/betaRect,2));
gx[i]->SetParameter(3, 1-gS2);
gx[i]->SetParameter(4, mb);
gx[i]->SetParameter(5, -gS2*slope);
gx[i]->SetNpx(1000);
gList->Add(gx[i]);
printf("/");
if( i > 1 && i % 40 == 0 ) printf("\n");
}
gList->Write("gList", TObject::kSingleKey);
printf(" %d constant thetaCM functions\n", gxSize);
int n = ExKnown.size();
TObjArray * fList = new TObjArray();
TF1** f = new TF1*[n];
for( int i = 0; i< n ; i++){
name.Form("f%d", i);
f[i] = new TF1(name, "[0] + [1] * x", -1000, 1000);
f[i]->SetParameter(0, y0[i]);
f[i]->SetParameter(1, slope);
f[i]->SetNpx(1000);
fList->Add(f[i]);
printf(".");
}
fList->Write("fList", TObject::kSingleKey);
printf(" %d e-z infinte-small detector functions\n", n);
//--- cal modified f
TObjArray * fxList = new TObjArray();
TGraph ** fx = new TGraph*[n];
vector<double> px, py;
int countfx = 0;
for( int j = 0 ; j < n; j++){
double a = helios.GetDetRadius();
double q = TMath::Sqrt(mb*mb + kCM[j] * kCM[j] );
px.clear();
py.clear();
countfx = 0;
for(int i = 0; i < 100; i++){
double thetacm = TMath::Pi()/TMath::Log(100) * (TMath::Log(100) - TMath::Log(100-i)) ;//using log scale, for more point in small angle.
double temp = TMath::TwoPi() * slope / betaRect / kCM[j] * a / TMath::Sin(thetacm);
double pxTemp = betaRect /slope * (gamma * betaRect * q - gamma * kCM[j] * TMath::Cos(thetacm)) * (1 - TMath::ASin(temp)/TMath::TwoPi()) ;
double pyTemp = gamma * q - mb - gamma * betaRect * kCM[j] * TMath::Cos(thetacm);
if( TMath::IsNaN(pxTemp) || TMath::IsNaN(pyTemp) ) continue;
px.push_back(pxTemp);
py.push_back(pyTemp);
countfx ++;
}
fx[j] = new TGraph(countfx, &px[0], &py[0]);
name.Form("fx%d", j);
fx[j]->SetName(name);
fx[j]->SetLineColor(4);
fxList->Add(fx[j]);
printf(",");
}
fxList->Write("fxList", TObject::kSingleKey);
printf(" %d e-z finite-size detector functions\n", n);
//--- cal modified thetaCM vs z
TObjArray * txList = new TObjArray();
TGraph ** tx = new TGraph*[n];
for( int j = 0 ; j < n; j++){
double a = helios.GetDetRadius();
double q = TMath::Sqrt(mb*mb + kCM[j] * kCM[j] );
px.clear();
py.clear();
countfx = 0;
for(int i = 0; i < 100; i++){
double thetacm = (i + 8.) * TMath::DegToRad();
double temp = TMath::TwoPi() * slope / betaRect / kCM[j] * a / TMath::Sin(thetacm);
double pxTemp = betaRect /slope * (gamma * betaRect * q - gamma * kCM[j] * TMath::Cos(thetacm)) * (1 - TMath::ASin(temp)/TMath::TwoPi());
double pyTemp = thetacm * TMath::RadToDeg();
if( TMath::IsNaN(pxTemp) || TMath::IsNaN(pyTemp) ) continue;
px.push_back(pxTemp);
py.push_back(pyTemp);
countfx ++;
}
tx[j] = new TGraph(countfx, &px[0], &py[0]);
name.Form("tx%d", j);
tx[j]->SetName(name);
tx[j]->SetLineColor(4);
txList->Add(tx[j]);
printf("*");
}
txList->Write("txList", TObject::kSingleKey);
printf(" %d thetaCM-z for finite-size detector functions\n", n);
//========timer
TBenchmark clock;
bool shown ;
clock.Reset();
clock.Start("timer");
shown = false;
//change the number of event into human easy-to-read form
int numEvent = reactionConfig.numEvents;
int digitLen = TMath::Floor(TMath::Log10(numEvent));
TString numEventStr;
if( 3 <= digitLen && digitLen < 6 ){
numEventStr.Form("%5.1f kilo", numEvent/1000.);
}else if ( 6<= digitLen && digitLen < 9 ){
numEventStr.Form("%6.2f million", numEvent/1e6);
}else if ( 9<= digitLen ){
numEventStr.Form("%6.2f billion", numEvent/1e9);
}
printf("\e[32m#################################### generating %s events \e[0m\n", numEventStr.Data());
//====================================================== calculate event
int count = 0;
for( int i = 0; i < numEvent; i++){
bool redoFlag = true;
if( !reactionConfig.isRedo ) redoFlag = false;
do{
//==== Set Ex of A
ExAID = gRandom->Integer(nExA);
ExA = ExAList[ExAID];
reaction.SetExA(ExA);
//==== Set Ex of B
if( ExKnown.size() == 1 ) {
ExID = 0;
Ex = ExKnown[0] + (ExWidth[0] == 0 ? 0 : gRandom->Gaus(0, ExWidth[0]));
}else{
ExID = exDist->GetRandom();
Ex = ExKnown[ExID]+ (ExWidth[ExID] == 0 ? 0 : gRandom->Gaus(0, ExWidth[ExID]));
}
reaction.SetExB(Ex);
//==== Set incident beam
KEA = reactionConfig.beamEnergy;
if( reactionConfig.beamEnergySigma == 0 ){
KEA = reactionConfig.beamEnergy;
}else{
KEA = gRandom->Gaus(reactionConfig.beamEnergy, reactionConfig.beamEnergySigma);
}
theta = 0.0;
if( reactionConfig.beamAngleSigma == 0 ){
theta = reactionConfig.beamAngle;
}else{
theta = gRandom->Gaus(reactionConfig.beamAngle, reactionConfig.beamAngleSigma);
}
phi = 0.0;
//==== for taregt scattering
reaction.SetIncidentEnergyAngle(KEA, theta, 0.);
reaction.CalReactionConstant();
TLorentzVector PA = reaction.GetPA();
//depth = 0;
if( isTargetScattering ){
//==== Target scattering, only energy loss
depth = targetThickness * gRandom->Rndm();
msA.SetTarget(density, depth);
TLorentzVector PAnew = msA.Scattering(PA);
KEAnew = msA.GetKE()/reactionConfig.beamA;
reaction.SetIncidentEnergyAngle(KEAnew, theta, phi);
reaction.CalReactionConstant();
Ecm = reaction.GetCMTotalKE();
}
//==== Calculate thetaCM, phiCM
if( distFile->IsOpen()){
dist = (TF1 *) distList->At(ExID);
thetaCM = dist->GetRandom() / 180. * TMath::Pi();
}else{
thetaCM = TMath::ACos(2 * gRandom->Rndm() - 1) ;
}
double phiCM = TMath::TwoPi() * gRandom->Rndm();
//==== Calculate reaction
TLorentzVector * output = reaction.Event(thetaCM, phiCM);
TLorentzVector Pb = output[2];
TLorentzVector PB = output[3];
//==== Calculate energy loss of scattered and recoil in target
if( isTargetScattering ){
if( Pb.Theta() < TMath::PiOver2() ){
msb.SetTarget(density, targetThickness - depth);
}else{
msb.SetTarget(density, depth);
}
Pb = msb.Scattering(Pb);
TbLoss = msb.GetKELoss();
msB.SetTarget(density, targetThickness - depth);
PB = msB.Scattering(PB);
}else{
TbLoss = 0;
}
//======= Decay of particle-B
int decayID = 0;
int new_zB = reactionConfig.recoilHeavyZ;
if( reactionConfig.isDecay){
//decayID = decay.CalDecay(PB, Ex, 0, phiCM + TMath::Pi()/2.); // decay to ground state
decayID = decay.CalDecay(PB, Ex, 0, phiCM + TMath::Pi()/2); // decay to ground state
if( decayID == 1 ){
PB = decay.GetDaugther_D();
//decayTheta = decay.GetAngleChange();
decayTheta = decay.GetThetaCM();
new_zB = reactionConfig.heavyDecayZ;
}else{
decayTheta = TMath::QuietNaN();
}
}
//################################### tree branches
//===== reaction
thetab = Pb.Theta() * TMath::RadToDeg();
thetaB = PB.Theta() * TMath::RadToDeg();
Tb = Pb.E() - Pb.M();
TB = PB.E() - PB.M();
phib = Pb.Phi() * TMath::RadToDeg();
phiB = PB.Phi() * TMath::RadToDeg();
//==== Helios
///printf(" thetaCM : %f \n", thetaCM * TMath::RadToDeg());
if( Tb > 0 || TB > 0 ){
helios.CalArrayHit(Pb, reaction.GetCharge_b());
helios.CalRecoilHit(PB, new_zB);
hit = 2;
while( hit > 1 ){ hit = helios.DetAcceptance(); } /// while hit > 1, goto next loop;
trajectory orb_b = helios.GetTrajectory_b();
trajectory orb_B = helios.GetTrajectory_B();
e = helios.GetEnergy() + gRandom->Gaus(0, detGeo.array1.eSigma);
double ranX = gRandom->Gaus(0, detGeo.array1.zSigma);
z = orb_b.z + ranX;
detX = helios.GetDetX() + ranX;
z0 = orb_b.z0;
t = orb_b.t;
loop = orb_b.loop;
detID = orb_b.detID;
detRowID = orb_b.detRowID;
rho = orb_b.rho;
rhoArray = orb_b.R;
xArray = orb_b.x;
yArray = orb_b.y;
//ELUM
if( detGeo.elumPos1 != 0 ){
xElum1 = helios.GetXPos(detGeo.elumPos1);
yElum1 = helios.GetYPos(detGeo.elumPos1);
rhoElum1 = helios.GetR(detGeo.elumPos1);
}
if( detGeo.elumPos2 != 0 ){
xElum2 = helios.GetXPos(detGeo.elumPos2);
yElum2 = helios.GetYPos(detGeo.elumPos2);
rhoElum2 = helios.GetR(detGeo.elumPos2);
}
//Recoil
rhoRecoil = orb_B.R;
tB = orb_B.t;
xRecoil = orb_B.x;
yRecoil = orb_B.y;
rhoB = orb_B.rho;
//other recoil detectors
if ( detGeo.recoilPos1 != 0 ){
xRecoil1 = helios.GetRecoilXPos(detGeo.recoilPos1);
yRecoil1 = helios.GetRecoilYPos(detGeo.recoilPos1);
rhoRecoil1 = helios.GetRecoilR(detGeo.recoilPos1);
}
if ( detGeo.recoilPos2 != 0 ){
xRecoil2 = helios.GetRecoilXPos(detGeo.recoilPos2);
yRecoil2 = helios.GetRecoilYPos(detGeo.recoilPos2);
rhoRecoil2 = helios.GetRecoilR(detGeo.recoilPos2);
}
reaction.CalExThetaCM(e, z, helios.GetBField(), helios.GetDetRadius());
ExCal = reaction.GetEx();
thetaCMCal = reaction.GetThetaCM();
//change thetaCM into deg
thetaCM = thetaCM * TMath::RadToDeg();
//if decay, get the light decay particle on the recoil;
if( reactionConfig.isDecay ){
if( decayID == 1 ){
TLorentzVector Pd = decay.GetDaugther_d();
Td = Pd.E() - Pd.M();
helios.CalRecoilHit(Pd, reactionConfig.heavyDecayZ);
trajectory orb_d = helios.GetTrajectory_B();
rhoRecoil_d = orb_d.R;
xRecoil_d = orb_d.x;
yRecoil_d = orb_d.y;
}else{
rhoRecoil_d = TMath::QuietNaN();
xRecoil_d = TMath::QuietNaN();
yRecoil_d = TMath::QuietNaN();
}
}
}else{
hit = -404;
}
if( hit == 1) count ++;
if( reactionConfig.isRedo ){
if( hit == 1) {
redoFlag = false;
}else{
redoFlag = true;
//printf("%d, %2d, thetaCM : %f, theta : %f, z0: %f \n", i, hit, thetaCM * TMath::RadToDeg(), thetab, helios.GetZ0());
}
}else{
redoFlag = false;
}
}while( redoFlag );
tree->Fill();
//#################################################################### Timer
clock.Stop("timer");
Double_t time = clock.GetRealTime("timer");
clock.Start("timer");
if ( !shown ) {
if (fmod(time, 10) < 1 ){
printf( "%10d[%2d%%]| %8.2f sec | expect: %5.1f min \n", i, TMath::Nint((i+1)*100./numEvent), time , numEvent*time/(i+1)/60);
shown = 1;
}
}else{
if (fmod(time, 10) > 9 ){
shown = 0;
}
}
}
saveFile->Write();
saveFile->Close();
distFile->Close();
printf("=============== done. saved as %s. count(hit==1) : %d\n", saveFileName.Data(), count);
//gROOT->ProcessLine(".q");
}

172
Cleopatra/alpha.C Normal file
View File

@ -0,0 +1,172 @@
#include "HELIOS_LIB.h"
#include "TROOT.h"
#include "TBenchmark.h"
#include "TLorentzVector.h"
#include "TMath.h"
#include "TFile.h"
#include "TF1.h"
#include "TTree.h"
#include "TRandom.h"
#include <stdlib.h>
#include <vector>
#include <fstream>
#include <TObjArray.h>
//----------- usage
// $root transfer.C+ | tee output.txt
// this will same the massage to output.txt
const double ma = 3727.3792; // alpha mass
void alpha(){
//================================================= User Setting
const int numEnergy = 4;
double energy [numEnergy] = {3.18, 5.16, 5.49, 5.81};
int numEvent = 1000000;
//---- HELIOS detector geometry
//string heliosDetGeoFile = "detectorGeo.txt";
string heliosDetGeoFile = "";
double BField = 2.5; // T
double BFieldTheta = 0.; // direction of B-field
bool isCoincidentWithRecoil = false;
double eSigma = 0.040 ; // detector energy sigma MeV
double zSigma = 0.500 ; // detector position sigma mm
//---- save root file name
TString saveFileName = "alpha.root";
//=============================================================
//=============================================================
printf("===================================================\n");
printf("============= Alpha source in HELIOS ============\n");
printf("===================================================\n");
printf("========= Alpha Enegry : \n");
for( int i = 0; i < numEnergy ; i++){
printf("%2d | %6.2f MeV\n", i, energy[i]);
}
//======== Set HELIOS
printf("############################################## HELIOS configuration\n");
HELIOS helios;
helios.OverrideMagneticFieldDirection(BFieldTheta);
helios.OverrideFirstPos(-700);
//helios.OverrideDetectorDistance(5);
bool sethelios = helios.SetDetectorGeometry(heliosDetGeoFile);
if( !sethelios){
helios.OverrideMagneticField(BField);
printf("======== B-field : %5.2f T, Theta : %6.2f deg\n", BField, BFieldTheta);
}
helios.SetCoincidentWithRecoil(isCoincidentWithRecoil);
printf("========== energy resol.: %f MeV\n", eSigma);
printf("=========== pos-Z resol.: %f mm \n", zSigma);
//====================== build tree
TFile * saveFile = new TFile(saveFileName, "recreate");
TTree * tree = new TTree("tree", "tree");
double theta, phi, T;
int hit; // the output of Helios.CalHit
double e, z, x, t;
int loop, detID;
double dphi, rho; //rad of rotation, and radius
int energyID;
double xHit, yHit;
tree->Branch("hit", &hit, "hit/I");
tree->Branch("theta", &theta, "theta/D");
tree->Branch("phi", &phi, "phi/D");
tree->Branch("T", &T, "T/D");
tree->Branch("energy", &energy, "energy/D");
tree->Branch("energyID", &energyID, "energyID/I");
tree->Branch("e", &e, "e/D");
tree->Branch("x", &x, "x/D");
tree->Branch("z", &z, "z/D");
tree->Branch("t", &t, "t/D");
tree->Branch("detID", &detID, "detID/I");
tree->Branch("loop", &loop, "loop/I");
tree->Branch("dphi", &dphi, "dphi/D");
tree->Branch("rho", &rho, "rho/D");
tree->Branch("xHit", &xHit, "xHit/D");
tree->Branch("yHit", &yHit, "yHit/D");
//========timer
TBenchmark clock;
bool shown ;
clock.Reset();
clock.Start("timer");
shown = false;
printf("############################################## generating %d events \n", numEvent);
//====================================================== calculate
int count = 0;
TLorentzVector P;
TVector3 v;
for( int i = 0; i < numEvent; i++){
//==== generate alpha
theta = TMath::ACos(2 * gRandom->Rndm() - 1) ;
phi = TMath::TwoPi() * gRandom->Rndm();
energyID = gRandom->Integer(numEnergy);
T = energy[energyID];
double p = TMath::Sqrt( ( ma + T )*(ma + T) - ma* ma);
v.SetMagThetaPhi(p, theta, phi);
P.SetVectM(v, ma);
//################################### tree branches
//==== Helios
hit = helios.CalHit(P, 2, P, 2);
e = helios.GetEnergy() + gRandom->Gaus(0, eSigma);
z = helios.GetZ() ;
x = helios.GetX() + gRandom->Gaus(0, zSigma);
t = helios.GetTime();
loop = helios.GetLoop();
detID = helios.GetDetID();
dphi = helios.GetdPhi();
rho = helios.GetRho();
xHit = helios.GetXPos(z);
yHit = helios.GetYPos(z);
z += gRandom->Gaus(0, zSigma);
if( hit == 1) {
count ++;
}
tree->Fill();
//#################################################################### Timer
clock.Stop("timer");
Double_t time = clock.GetRealTime("timer");
clock.Start("timer");
if ( !shown ) {
if (fmod(time, 10) < 1 ){
printf( "%10d[%2d%%]| %8.2f sec | expect: %5.1f min \n", i, TMath::Nint((i+1)*100./numEvent), time , numEvent*time/(i+1)/60);
shown = 1;
}
}else{
if (fmod(time, 10) > 9 ){
shown = 0;
}
}
}
saveFile->Write();
saveFile->Close();
printf("=============== done. saved as %s. count(hit==1) : %d\n", saveFileName.Data(), count);
gROOT->ProcessLine(".q");
}

4
Cleopatra/SimKnockout.C → Cleopatra/knockout.C
View File

@ -1,4 +1,4 @@
#include "ClassHelio.h" #include "HELIOS_LIB.h"
#include "TROOT.h" #include "TROOT.h"
#include "TBenchmark.h" #include "TBenchmark.h"
#include "TLorentzVector.h" #include "TLorentzVector.h"
@ -98,7 +98,7 @@ void knockout(){
bool sethelios1 = helios1.SetDetectorGeometry(heliosDetGeoFile); bool sethelios1 = helios1.SetDetectorGeometry(heliosDetGeoFile);
bool sethelios2 = helios2.SetDetectorGeometry(heliosDetGeoFile); bool sethelios2 = helios2.SetDetectorGeometry(heliosDetGeoFile);
if( sethelios1 && sethelios2 ) { if( sethelios1 && sethelios2 ) {
int rowDet = helios1.GetNumberOfDetectorsInSamePos(); int mDet = helios1.GetNumberOfDetectorsInSamePos();
printf("========== energy resol.: %f MeV\n", eSigma); printf("========== energy resol.: %f MeV\n", eSigma);
printf("=========== pos-Z resol.: %f mm \n", zSigma); printf("=========== pos-Z resol.: %f mm \n", zSigma);
}else{ }else{

43
Cleopatra/makefile
View File

@ -1,41 +1,38 @@
CC = g++ CC=g++
CFLAG = -O2
depend = ClassTransfer.h ClassHelios.h ClassIsotope.h ClassDecay.h constant.h potentials.h ALL = Isotope InFileCreator ExtractXSec ExtractXSecFromText PlotTGraphTObjArray FindThetaCM Transfer PlotSimulation IsotopeShort
ALL = Isotope InFileCreator ExtractXSec ExtractXSecFromText PlotTGraphTObjArray Cleopatra FindThetaCM SimTransfer SimAlpha
all: $(ALL) all: $(ALL)
Isotope: ClassIsotope.h Isotope.C #Cleopatra: Cleopatra.C ../Simulation/Isotope.h ../Simulation/constant.h potentials.h InFileCreator.h ExtractXSec.h PlotTGraphTObjArray.h
$(CC) $(CFLAG) Isotope.C -o Isotope # $(CC) Cleopatra.C -o Cleopatra `root-config --cflags --glibs`
InFileCreator: InFileCreator.C InFileCreator.h $(depend) InFileCreator: InFileCreator.C InFileCreator.h ../Cleopatra/Isotope.h ../Cleopatra/constant.h potentials.h
$(CC) $(CFLAG) InFileCreator.C -o InFileCreator `root-config --cflags --glibs` $(CC) InFileCreator.C -o InFileCreator `root-config --cflags --glibs`
ExtractXSec: ExtractXSec.C ExtractXSec.h ExtractXSec: ExtractXSec.C ExtractXSec.h
$(CC) $(CFLAG) ExtractXSec.C -o ExtractXSec `root-config --cflags --glibs` $(CC) ExtractXSec.C -o ExtractXSec `root-config --cflags --glibs`
ExtractXSecFromText: ExtractXSecFromText.C ExtractXSec.h ExtractXSecFromText: ExtractXSecFromText.C ExtractXSec.h
$(CC) $(CFLAG) ExtractXSecFromText.C -o ExtractXSecFromText `root-config --cflags --glibs` $(CC) ExtractXSecFromText.C -o ExtractXSecFromText `root-config --cflags --glibs`
PlotTGraphTObjArray: PlotTGraphTObjArray.C PlotTGraphTObjArray.h PlotTGraphTObjArray: PlotTGraphTObjArray.C PlotTGraphTObjArray.h
$(CC) $(CFLAG) PlotTGraphTObjArray.C -o PlotTGraphTObjArray `root-config --cflags --glibs` $(CC) PlotTGraphTObjArray.C -o PlotTGraphTObjArray `root-config --cflags --glibs`
Cleopatra: Cleopatra.C InFileCreator.h ExtractXSec.h FindThetaCM: FindThetaCM.C FindThetaCM.h ../Cleopatra/HELIOS_LIB.h ../Cleopatra/Isotope.h ../Cleopatra/constant.h
$(CC) $(CFLAG) Cleopatra.C -o Cleopatra `root-config --cflags --glibs` $(CC) FindThetaCM.C -o FindThetaCM `root-config --cflags --glibs`
FindThetaCM: FindThetaCM.C FindThetaCM.h $(depend) Transfer: Transfer.C Transfer.h ../Cleopatra/HELIOS_LIB.h ../Cleopatra/Isotope.h ../Cleopatra/constant.h
$(CC) $(CFLAG) FindThetaCM.C -o FindThetaCM `root-config --cflags --glibs` $(CC) Transfer.C -o Transfer `root-config --cflags --glibs`
SimTransfer: SimTransfer.C ClassTransfer.h $(depend) ../Armory/ClassReactionConfig.h ../Armory/ClassDetGeo.h PlotSimulation: PlotSimulation.C Check_Simulation.C
$(CC) $(CFLAG) SimTransfer.C -o SimTransfer `root-config --cflags --glibs` $(CC) PlotSimulation.C -o PlotSimulation `root-config --cflags --glibs`
SimTransfer_single: SimTransfer_single.C $(depend) ../Armory/ClassReactionConfig.h ../Armory/ClassDetGeo.h Isotope: ../Cleopatra/Isotope.h ../Cleopatra/Isotope.C
$(CC) $(CFLAG) SimTransfer_single.C -o SimTransfer_single `root-config --cflags --glibs` $(CC) Isotope.C -o Isotope
SimAlpha: SimAlpha.C ClassHelios.h IsotopeShort: ../Cleopatra/Isotope.h ../Cleopatra/IsotopeShort.C
$(CC) $(CFLAG) SimAlpha.C -o SimAlpha `root-config --cflags --glibs` $(CC) IsotopeShort.C -o IsotopeShort
clean: clean:
/bin/rm -f $(ALL) /bin/rm -f $(ALL)

4
Cleopatra/nuclear_data.py
View File

@ -45,7 +45,7 @@ def FindSym(Z):
return 'na' return 'na'
def Mass(A, Z): def Mass(A, Z):
try : try :
BEA = float(haha['binding'][haha['z']==Z][haha['n']==(A-Z)].iloc[0])/1000 BEA = float(haha['binding'][haha['z']==Z][haha['n']==(A-Z)])/1000
return (A-Z)*mn + Z*mp - A * BEA return (A-Z)*mn + Z*mp - A * BEA
except : except :
return -404 return -404
@ -87,7 +87,7 @@ def Info(AZ):
try : try :
Z = temp['z'][0] Z = temp['z'][0]
N = temp['n'][0] N = temp['n'][0]
mass = float(Z*mp + N*mn - (Z+N)*temp['binding'].iloc[0]/1000) mass = Z*mp + N*mn - (Z+N)*temp['binding']/1000
halfLife = temp['half_life_sec'][0] halfLife = temp['half_life_sec'][0]
print(" A : %3d, Z : %3d, N : %3d, Mass : %.4f MeV" % (Z+N, Z, N, mass)) print(" A : %3d, Z : %3d, N : %3d, Mass : %.4f MeV" % (Z+N, Z, N, mass))
print("Jpi : %3s, half-live : %s sec" % (temp['jp'][0], halfLife)) print("Jpi : %3s, half-live : %s sec" % (temp['jp'][0], halfLife))

4
Cleopatra/potentials.h
View File

@ -26,7 +26,7 @@ void PrintPotential(){
/// A B C D E F G H I J K L M N O P Q R S T U V W X Y Z /// A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
/// 1 1 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 1 1 1 /// 1 1 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 1 1 1
std::string potentialRef(std::string name){ string potentialRef(string name){
//======== Deuteron //======== Deuteron
if( name == "A" ){ if( name == "A" ){
@ -1034,7 +1034,7 @@ bool BassaniPicardPotential(int A, int Z, double E){
return true; return true;
} }
bool CallPotential(std::string potName, int A, int Z, double E, int Zproj){ bool CallPotential(string potName, int A, int Z, double E, int Zproj){
bool okFlag = false; bool okFlag = false;
if( potName == "A") okFlag = AnCaiPotential(A, Z, E); if( potName == "A") okFlag = AnCaiPotential(A, Z, E);

2
Cleopatra/ptolemy_mac
View File

@ -1,2 +1,2 @@
#!/bin/bash #!/bin/bash
docker run --rm --platform linux/amd64 -i -w $PWD tehatanlgov/ptolemy docker run --rm -i -w $PWD tehatanlgov/ptolemy

77
Cleopatra/transfer_test.C Normal file
View File

@ -0,0 +1,77 @@
#include "HELIOS_LIB.h"
#include "TROOT.h"
#include "TBenchmark.h"
#include "TLorentzVector.h"
#include "TMath.h"
#include "TFile.h"
#include "TF1.h"
#include "TTree.h"
#include "TRandom.h"
#include "TGraph.h"
#include "TMacro.h"
#include <stdlib.h>
#include <vector>
#include <fstream>
#include <TObjArray.h>
void transfer_test(double t, double p, double bField, bool fromOutSide){
TransferReaction reaction;
reaction.SetA(14, 6);
reaction.Seta( 2, 1);
reaction.Setb( 1, 1);
reaction.SetB(15, 6);
reaction.SetExB(0);
reaction.SetIncidentEnergyAngle(10, 0, 0);
reaction.CalReactionConstant();
HELIOS helios;
helios.SetDetectorGeometry("../working/detectorGeo.txt");
helios.OverrideMagneticField(bField);
helios.SetDetectorOutside(fromOutSide);
double beta = reaction.GetReactionBeta() ;
double slope = 299.792458 * abs(helios.GetBField()) / TMath::TwoPi() * beta / 1000.; // MeV/mm
double alpha = slope / beta;
printf("===================================\n");
printf("Mass A : %8.2f MeV/c2\n", reaction.GetMass_A());
printf("Mass a : %8.2f MeV/c2\n", reaction.GetMass_a());
printf("Mass b : %8.2f MeV/c2\n", reaction.GetMass_b());
printf("Mass B : %8.2f MeV/c2\n", reaction.GetMass_B());
printf("CM Mass : %8.2f MeV\n", reaction.GetCMTotalEnergy());
printf("CM beta : %8.6f \n", beta);
printf("slope : %8.6f MeV\n", alpha * beta);
printf("alpha : %8.6f MeV\n", alpha);
double thetaCM = t * TMath::DegToRad();
double phiCM = - p * TMath::DegToRad();
TLorentzVector * output = reaction.Event(thetaCM, phiCM);
TLorentzVector Pb = output[2];
TLorentzVector PB = output[3];
Pb.Print();
PB.Print();
helios.CalArrayHit(Pb, 1);
helios.CalRecoilHit(PB, 6);
printf("+++++++++++++++++++++++++++++++++++++\n");
int hitID = 2;
while( hitID > 1 ){
printf("==================== check accp.\n");
hitID = helios.DetAcceptance();
printf("-------------------- hitID %d\n", hitID);
}
PrintTrajectory(helios.GetTrajectory_b());
}

674
LICENSE
View File

@ -1,674 +0,0 @@
GNU GENERAL PUBLIC LICENSE
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but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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along with this program. If not, see <https://www.gnu.org/licenses/>.
Also add information on how to contact you by electronic and paper mail.
If the program does terminal interaction, make it output a short
notice like this when it starts in an interactive mode:
<program> Copyright (C) <year> <name of author>
This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, your program's commands
might be different; for a GUI interface, you would use an "about box".
You should also get your employer (if you work as a programmer) or school,
if any, to sign a "copyright disclaimer" for the program, if necessary.
For more information on this, and how to apply and follow the GNU GPL, see
<https://www.gnu.org/licenses/>.
The GNU General Public License does not permit incorporating your program
into proprietary programs. If your program is a subroutine library, you
may consider it more useful to permit linking proprietary applications with
the library. If this is what you want to do, use the GNU Lesser General
Public License instead of this License. But first, please read
<https://www.gnu.org/licenses/why-not-lgpl.html>.

86
README.md
View File

@ -4,78 +4,34 @@ This is the analysis package for the SOLARIS DAQ. It is supposed to be the analy
The folder struture is The folder struture is
Analysis Analysis
├── README.md
├── SetupNewExp // bash script to create new branch and raw data folder ├── README.md
├── SOLARIS.sh // bash script to define some env variable and functions
├── Armory // analysis codes, independent from experiment. ├── SetupNewExp // bash script to create new branch and raw data folder
├── Cleopatra // Swaper for DWBA code Ptolomey and simulation
├── data_raw // should be the symbolic link to the raw data, created by SetUpNewExp ├── SOLARIS.sh // bash script to define some env variable and functions
├── root_data // symbolic link to converted root file, created by SetUpNewExp
├── armory // analysis codes, independent from experiment.
├── Cleopatra // Swaper for DWBA code Ptolomey
├── data_raw // should be the symbolic link to the raw data, created by SetUpNewExp
├── root_data // symbolic link to converted root file, created by SetUpNewExp
└── working // working directory, depends on experiment. └── working // working directory, depends on experiment.
# SOLARIS.sh
this batch shell script adds few enviroment variables and functions. Add the Armory and Cleopatra into the system PATH.
```sh
>source SOLARIS.sh
```
# Event Builder # Event Builder
Please download the SOLARIS_DAQ, under the Aux directory, make, and link the EventBuilder to Armory. The EventBuilder is at the armory. It depends on the Hit.h and SolReader.h.
The reason for having EventBuilder in the DAQ code is the Hit.h is original from the DAQ code. ## Hit.h
# ROOT issue The Hit class stores a hit (or a data block)
We are still using TProof for parallel calculation. TProof is not pre-compiled since 6.32+. And 6.30 only precompiled for Ubuntu 22.04. So, for system using Ubuntu 24.04, user must precompiled to root in order to work. ## SolReader.h
## Compilation The SolReader class read the sol file. It can be loaded in CERN ROOT alone.
We can manual download the git repository of the root following the instruction. in the cmake
```sh
root_install="/opt/root_v6.32.00_compiled"
root_src="root_src"
root_build="root_build"
cmake -DCMAKE_INSTALL_PREFIX=$root_install $root_src -Dproof=ON -Dmathmore=ON
sudo cmake --build . --target install -j <number_of_threads>
```
# Analysis & Simulation
The Armory/AnalysisLib.h constains many small but handy functions.
All class headers are started with Class*.h
The classes **DetGeo**** and **ReactionConfig** are fundamental for loading the detectorGeo.txt and reactionConfig.txt.
Both txt file support empty lines, can have multiple settings. The reason for that is for many-array configuration.
The **TransferReaction** class is only use one of the reaction from the reactionConfig.txt. This class generates the TLorentzVector for ligh and heavy recoils.
```C++
TransferReaction::SetReactionFromFile("reactionConfig.txt", ID); // ID = 0 or 1
```
Same for the **Helios** class, **Helios** class use the detectorGeo.txt. It takes TLorentzVector and calculate does it be detected by the array or recoil detector.
```C++
HELIOS::SetDetectorGeometry("detectorGeo.txt", ID); // ID = 0 or 1
```
## Simulation
Simply run
```sh
>SimTransfer
```
it will digest the detectorGeo.txt, reactionConfig.txt, if DWBA.root exist, find the reactions.
* it does not have TargetScattering (yet)
* for multiple reactions, it will randomly use any and disregard the total Xsec of different reactions. The Xsec only takes effect within same reaction.
* the decay of heavy recoil only have isotropic decay.

16
SOLARIS.sh
View File

@ -16,28 +16,24 @@ export SOLARISANADIR
echo "####### set global variable SOLARISANADIR = ${SOLARISANADIR}" echo "####### set global variable SOLARISANADIR = ${SOLARISANADIR}"
export PATH=$PATH:$SOLARISANADIR/Armory:$SOLARISANADIR/Cleopatra export PATH=$PATH:$SOLARISANADIR/armory
echo "####### add ${SOLARISANADIR}/Armory into PATH" echo "####### add ${SOLARISANADIR}/armory into PATH"
echo "####### add ${SOLARISANADIR}/Cleopatra into PATH"
########################### ###########################
echo "####### Define BASH Alias and Functions for SOLARIS" echo "####### Define BASH Alias / Functions for SOLARIS"
echo " 2Working = goto the working directory"
echo " ShowRunTimeStamp = show Run Timestamp"
echo " ShowRunSize = show Run Size"
alias 2Working='cd ${SOLARISANADIR}/working' alias 2Working='cd ${SOLARISANADIR}/working'
alias ShowRunTimeStamp='cat $SOLARISANADIR/data_raw/RunTimeStamp.dat' alias ShowRunTimeStamp='cat $SOLARISANADIR/data_raw/data/RunTimeStamp.dat'
function ShowRunSize { function ShowRunSize {
if [ $# -ne 1 ]; then if [ $# -ne 1 ]; then
echo 'Please set run number ' echo 'Please set run number '
return 0 return 0
fi fi
source $SOLARISANADIR/data_raw/expName.sh source $SOLARISANADIR/working/expName.sh
RUN=$1 RUN=$1
if [ ${RUN} = "latest" ]; then if [ ${RUN} = "latest" ]; then
RUN=${runID} RUN=${runID}
@ -48,5 +44,5 @@ function ShowRunSize {
elif [ ${runLen} -eq 2 ]; then elif [ ${runLen} -eq 2 ]; then
RUN="0"${RUN} RUN="0"${RUN}
fi fi
du -hc $SOLARISANADIR/data_raw/${expName}_${RUN}_*.sol du -hc $SOLARISANADIR/data_raw/data/${expName}_${RUN}_*.sol
} }

239
WebSimHelper/EnergyLevelsPlot.js
View File

@ -1,239 +0,0 @@
let energy = [];
let jpi = [];
let Name;
let A;
let Sym;
function breakdownName(str) {
const match = str.match(/^(\d+)([a-zA-Z]+)$/);
if (match) {
const numberPart = parseInt(match[1]);
const stringPart = match[2];
return { numberPart, stringPart };
} else {
return null; // If the input string doesn't match the expected format
}
}
let Sn = 999;
let Sp = 999;
let Sa = 999;
function GetData(){
Name = document.getElementById('ASym').value;
let maxEx = parseFloat(document.getElementById('maxEx').value);
let str = 'displayIsoData.py?ASym=' + Name + "&maxEx=" + maxEx;
let client = new XMLHttpRequest();
client.onreadystatechange = function() {
let haha = client.responseText.split('\n');
jpi = [];
energy = [];
haha.forEach(line =>{
// console.log(line)
if( line.includes("Sn:") ) {
let pos1 = line.indexOf("Sn:");
let pos2 = line.indexOf("MeV");
Sn = parseFloat(line.substring(pos1+3, pos2));
}
if( line.includes("Sp:") ) {
let pos1 = line.indexOf("Sp:");
let pos2 = line.indexOf("MeV");
Sp = parseFloat(line.substring(pos1+3, pos2));
}
if( line.includes("Sa:") ) {
let pos1 = line.indexOf("Sa:");
let pos2 = line.indexOf("MeV");
Sa = parseFloat(line.substring(pos1+3, pos2));
}
if( line.includes("<tr><td style=") && line.length != 0) {
jpi.push(line.substring(95).slice(0,-10).trim());
energy.push(parseFloat(line.substring(43,54).trim()));
// console.log(jpi[jpi.length - 1] + ", " + energy[energy.length-1]);
}
});
}
client.open('GET', str, false);
client.send();
}
function PlotLevels(){
GetData();
Plotly.purge("Plot_Levels");
if( energy.length == 0 ) return;
// console.log( Name + " | num. states : " + energy.length);
const plotWidth = 300;
const plotHeight = 600;
const yMin = -1;
let maxEx = parseFloat(document.getElementById('maxEx').value);
const maxExExp = Math.max(...energy);
// console.log(maxExExp);
// let maxY = parseFloat(document.getElementById('plotRange').value);
const fig = {
data: [],
layout: {
plot_bgcolor: 'white',
width: plotWidth,
height: plotHeight,
margin: { l: 0, r: 0, t: 0, b: 0 },
showlegend: false,
xaxis: {
showline: false,
visible: false,
range: [-1, 2.5]
},
yaxis: {
range: [yMin, maxEx + 2],
showline: false,
visible: false
},
annotations: []
}
};
const l = energy.length;
const fontSize = 14;
const fontSizeMeV = fontSize / plotHeight * (maxExExp + 1 - yMin);
let ypos = [];
for( let i = 0; i < energy.length; i++) ypos.push(energy[i]);
let noOverlap = false;
let loop = 0;
while (!noOverlap && loop < 2 * l) {
for (let i = 1; i <= l; i++) {
const diff = ypos[i] - ypos[i - 1];
if (diff < fontSizeMeV) {
ypos[i - 1] += (diff - fontSizeMeV) / 2;
ypos[i] += (fontSizeMeV - diff) / 2;
if (ypos[i - 1] < yMin + fontSizeMeV / 2) {
ypos[i - 1] = yMin + fontSizeMeV / 2;
ypos[i] = ypos[i - 1] + fontSizeMeV;
}
}
}
let count = 0;
for (let i = 1; i <= l; i++) {
const diff = ypos[i] - ypos[i - 1];
if (diff > fontSizeMeV) {
count++;
}
}
if (count === l) {
noOverlap = true;
}
loop++;
}
for (let i = 0; i < l; i++) {
fig.data.push({
x: [0, 1],
y: [energy[i], energy[i]],
mode: 'lines',
line: { color: 'black', width: 1 }
});
fig.data.push({
x: [1.03, 1.1, 1.19],
y: [energy[i], ypos[i], ypos[i]],
mode: 'lines',
line: { color: 'gray', width: 1 }
});
// console.log(energy[i]+ ", " + ypos[i]);
fig.layout.annotations.push({
x: 1.2,
y: ypos[i],
text: `${energy[i].toFixed(3)}, ${jpi[i]}`,
xanchor: 'left',
font: { size: fontSize },
showarrow: false
});
}
console.log("Sn: " + Sn);
console.log("Sp: " + Sp);
console.log("Sa: " + Sa);
let leftPos = -0.8;
fig.data.push({
x: [leftPos, 1],
y: [Sn, Sn],
mode: 'lines',
line: { color: 'blue', width: 1 }
});
fig.layout.annotations.push({
x: leftPos,
y: Sn + fontSizeMeV/2,
text: `${'Sn:'+Sn.toFixed(3)}`,
xanchor: 'left',
font: { size: fontSize, color: 'blue' },
showarrow: false
});
fig.data.push({
x: [leftPos, 1],
y: [Sp, Sp],
mode: 'lines',
line: { color: 'red', width: 1 }
});
fig.layout.annotations.push({
x: leftPos,
y: Sp + fontSizeMeV/2,
text: `${'Sp:'+Sp.toFixed(3)}`,
xanchor: 'left',
font: { size: fontSize, color: 'red' },
showarrow: false
});
fig.data.push({
x: [leftPos, 1],
y: [Sa, Sa],
mode: 'lines',
line: { color: 'purple', width: 1 }
});
fig.layout.annotations.push({
x: leftPos,
y: Sa + fontSizeMeV/2,
text: `${'Sa:'+Sa.toFixed(3)}`,
xanchor: 'left',
font: { size: fontSize, color: 'purple' },
showarrow: false
});
// let NameYPos = (parseFloat(maxEx) + 2*fontSizeMeV);
// console.log(NameYPos);
let name2 = breakdownName(Name);
fig.layout.annotations.push({
x: 0.5,
y: (maxEx + 1),
text: "<sup>" + name2.numberPart +"</sup>" + name2.stringPart,
font: { size: 2 * fontSize },
showarrow: false
});
// Create the plot
Plotly.newPlot('Plot_Levels', fig.data, fig.layout);
}

55
WebSimHelper/README.md
View File

@ -1,55 +0,0 @@
# Introduction
This is a web inteface for the HELIOS/SOLARIS simulation. Its purpose is NOT to replace the Simulation_Helper.C in the origin digios repository.
It is simply provide a more easy accessible way to do simulation.
# Installation in Apache2
Assume the parant SOLARIS_ANALYSIS is in the home folder
add a symbolic link
```sh
$cd /var/www/html
$ln -s ~/SOLARIS_ANALYSIS SOLARIS
```
I want localhost/SOLARIS map to /var/www/html/SOLARIS/WebSimHelper, in the apache config
```sh
$cd /etc/apache2/sit-available
$touch SOLARIS.conf
```
inside SOLARIS.conf
```sh
<VirtualHost *:80>
ServerAdmin rtang@anl.gov
DocumentRoot /var/www/html/
ServerName localhost
#map localhost/SOLARIS to /var/www/html/SOLARIS/WebSimHelper
Alias /SOLARIS /var/www/html/SOLARIS/WebSimHelper
#set the directory properties
<Directory /var/www/html/>
Options Indexes FollowSymLinks
AllowOverride None
Require all granted
Options +ExecCGI
AddHandler cgi-script .cgi .py
</Directory>
ErrorLog ${APACHE_LOG_DIR}/error.log
CustomLog ${APACHE_LOG_DIR}/access.log combined
</VirtualHost>
```
then enable the site
```sh
$sudo a2ensite SOLARIS.conf
$sudo systemctl restart apach2.service
```

29
WebSimHelper/displayIsoData.py
View File

@ -1,29 +0,0 @@
#!/usr/bin/env /usr/bin/python3
import isotopeLib
import cgi
form = cgi.FieldStorage()
ASym = form.getvalue('ASym')
maxEx = form.getvalue('maxEx')
print( "Content-type:text/html\r\n\r\n")
print("<html>")
print("<style> body { font-family: courier, courier new, serif; color: #F7CF3C; } </style>")
print("<body>")
isotopeLib.PrintIsoWeb(ASym)
if maxEx == "can be omitted" or float(maxEx) <= 0:
maxEx = -1
else:
isotopeLib.PrintIsoExWeb(ASym, float(maxEx))
print("</body>")
print("</html>")

0
WebSimHelper/files/.gitkeep
View File

18
WebSimHelper/getEx.py
View File

@ -1,18 +0,0 @@
#!/usr/bin/env /usr/bin/python3
import isotopeLib as iso
import sys
if len(sys.argv) < 3:
print("Usage: python getEx.py A Z Ex")
sys.exit(1)
A = int(sys.argv[1])
Z = int(sys.argv[2])
Ex = float(sys.argv[3])
ASym = iso.GetSymbol(A, Z)
ExList = iso.GetExList(ASym, Ex)
print(ExList)

463
WebSimHelper/heliosmatics.html
View File

@ -1,463 +0,0 @@
<!DOCTYPE html>
<html>
<head>
<title>Heliosmatics</title>
<meta name="description" content="HELIOSmatics was first built by Ben P. Kay in MS Excel around 2010. Later, it was modified by Ryan Tang. Now, it migrates to web.">
<link rel="icon" type="image/x-icon" href="logos/SOLARIS_favicon.png">
<script src="https://cdn.plot.ly/plotly-2.16.1.min.js"></script>
<meta name="viewport" content="width=device-width, height=device-height, initial-scale=1.0, user-scalable=no, user-scalable=0"/>
</head>
<style>
body{
font-family: Arial, Helvetica, sans-serif;
background : #6DB33E;
}
.column{
float : left;
width: 650px;
padding: 0px;
}
.row:after {
content: "";
display: table;
clear: both;
}
.plotStyle{
width:650px;
height:600px;
}
.slider{
width : 400px;
}
.plotSlider{
width: 400px;
}
hr {
height:4px;
background-color:#F7CF3C;
border-style:none;
border-width:none;
}
@media screen and (max-width: 1000px) {
.column {
width: 100%;
}
.plotStyle{
width:400px;
height: 370px;
}
.slider{
width: 200px;
}
.plotSlider{
width: 180px;
}
img {
height: 50px;
}
}
</style>
<body>
<h1>HELIOSmatics</h1>
<button onclick="CopyInputs()">Copy settings to clipboard</button>
<h1 id='reactionName' style="color: #1363A7"> 24F(d,p)25F@10MeV/u</h1>
<table>
<tr>
<td style="text-align:right"> Beam (A):</td>
<td><Input type="text" style="width:60px" value="24F" id="beam" enterkeyhint="done"/></td>
<td style="text-align:right"> Beam Ex:</td>
<td><Input type="text" style="width:60px" value="0" id="beamEx" enterkeyhint="done"/></td>
<td>MeV</td>
<td id='beamSp'></td>
<!--td id="beamYield"></td>-->
</tr>
<tr>
<td style="text-align:right"> Target (a):</td>
<td><Input type="text" style="width:60px" value="d" id="target" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right"> Light (b):</td>
<td><Input type="text" style="width:60px" value="p" id="light" enterkeyhint="done"/></td>
<td style="text-align:right"> Q-value:</td>
<td id='Q-value'>2.057</td>
<td>MeV</td>
</tr>
<tr>
<td style="text-align:right"> Heavy (B):</td>
<td id='heavyName'>25F</td>
</tr>
</table>
<p style="font: 12px" id='heavySp'></p>
<p></p>
<table>
<tr>
<td>
<input type="radio" name="SSType" id='HELIOS' value="HELIOS"/>HELIOS
</td>
<td>
<input type="radio" name="SSType" id='SOLARIS' value="SOLARIS" checked="checked"/>SOLARIS
</td>
<td>
<input type="radio" name="SSType" id='ISS' value="ISS"/>ISS
</td>
</tr>
</table>
<p></p>
<table>
<tr>
<td style="text-align:right"> B-field (abs.):</td>
<td><Input type="text" style="width:60px" value="2" id='BField' enterkeyhint="done"/></td>
<td>T</td>
<td><Input type="range" min="0" max="6" step="0.05" value="2" class="slider" id='BRange'/> </td>
</tr>
<tr>
<td style="text-align:right"> Beam Energy:</td>
<td><Input type="text" style="width:60px" value="10" id='KEA' enterkeyhint="done"/></td>
<td>MeV/u</td>
<td><Input type="range" min="0" max="20" step="0.1" value="10" class="slider" id='KEARange'/> </td>
</tr>
<tr>
<td></td>
<td></td>
<td></td>
<td id='minKEA'> </td>
</tr>
</table>
<p></p>
<table id="ExTable", style="border:1px solid; text-align:center;">
<tr>
<th style="width:85px"> E<sub>x</sub> [MeV]</th>
<th style="width:85px"> &theta;<sub>cm</sub>[deg]</th>
<th style="width:70px">E<sub>b</sub>[MeV]</th>
<th style="width:70px">Z<sub>b0</sub>[mm]</th>
<th style="width:70px">Z<sub>b</sub>[mm]</th>
<th style="width:70px">2&rho;<sub>b</sub>[mm]</th>
<th style="width:70px">&theta;Lab<sub>b</sub>[deg]</th>
<th style="width:60px">T<sub>b</sub>[ns]</th>
<th style="width:70px">E<sub>B</sub>[MeV]</th>
<th style="width:90px">&theta;Lab<sub>B</sub>[deg]</th>
<th style="width:80px">Z<sub>B0</sub>/2[mm]</th>
<th style="width:70px">2&rho;<sub>B</sub>[mm]</th>
</tr>
</tr>
<td><input type="text" id='Ex1' name="Ex" size="8" value="0" enterkeyhint="done"/></td>
<td><input type="text" id='theta1' name="thetaCM" size="8" value="10" enterkeyhint="done"/></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tr>
<td><input type="text" id='Ex2' name="Ex" size="8" value="1" enterkeyhint="done"/></td>
<td><input type="text" id='theta2' name="thetaCM" size="8" value="40" enterkeyhint="done"/></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td><button type="button" onclick="addRow()" style="width:85px">Add E<sub>x</sub></button></td>
<td><button type="button" onclick="deleteRow()">Remove E<sub>x</sub></button></td>
</tr>
</table>
<p></p>
<table>
<tr>
<td style="text-align:right"> &theta;<sub>CM</sub>:</td>
<td><Input type="text" style="width:60px" value="0" id='thetaCM' enterkeyhint="done"/></td>
<td>deg</td>
<td><Input type="range" min="0" max="50" step="0.1" value="0" class="slider" id='thetaCMRange'/> </td>
</tr>
<td style="text-align:right"> Array Pos:</td>
<td><Input type="text" style="width:60px" value="-100" id='posArray' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="-500" max="1000" step="1" value="-100" class="slider" id='posArrayRange'/> </td>
</tr>
<tr>
<td style="text-align:right"> Recoil Pos:</td>
<td><Input type="text" style="width:60px" value="1500" id='posRecoil' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="0" max="2000" step="1" value="1500" class="slider" id='posRecoilRange'/> </td>
</tr>
</table>
<table>
<tr>
<td style="text-align:right" > Recoil radius, inner [mm]:</td>
<td><Input type="text" style="width:40px" value="10" id='innerRecoil' enterkeyhint="done"/></td>
<td style="text-align:right" > outter [mm]:</td>
<td><Input type="text" style="width:40px" value="45" id='outterRecoil' enterkeyhint="done"/></td>
</tr>
</table>
<p></p>
<div class="row">
<div class="column">
<table cellspacing="0" cellpadding="0">
<tr>
<td>
<div id="Plot_EZ" class="plotStyle"></div>
</td>
</tr>
<tr> <td>&nbsp;</td></tr>
<tr>
<td> &nbsp;zRange can be changed by Array position.</td>
</tr>
<tr>
<td>
<table>
<tr>
<td>eRange:</td>
<td><Input type="text" style="width:60px" value="12" id='eRange' enterkeyhint="done"/></td>
<td>MeV</td>
<td><Input type="range" min="1" max="30" step="0.1" value="12" class="plotSlider" id='eRangeSlider'/></td>
</tr>
</table>
</td>
</tr>
<tr> <td>&nbsp;</td></tr>
</table>
</div>
<div class="column">
<table cellspacing="0" cellpadding="0">
<tr>
<td>
<div id="Plot_RZ" class="plotStyle"></div>
</td>
</tr>
<tr> <td>&nbsp;</td></tr>
<tr>
<td>
<table>
<tr>
<td>zRange(Min):</td>
<td><Input type="text" style="width:60px" value="-200" id='zRange1' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="-2000" max="4000" step="1" value="-200" class="plotSlider" id='zRange1Slider'/></td>
</tr>
<tr>
<td>zRange(Max):</td>
<td><Input type="text" style="width:60px" value="2000" id='zRange2' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="-2000" max="4000" step="1" value="2000" class="plotSlider" id='zRange2Slider'/></td>
</tr>
<tr>
<td>rRange:</td>
<td><Input type="text" style="width:60px" value="50" id='rRange' enterkeyhint="done"/></td>
<td>mm</td>
<td><Input type="range" min="1" max="400" step="1" value="50" class="plotSlider" id='rRangeSlider'/></td>
</tr>
</table>
</td>
</tr>
<tr> <td>&nbsp;</td></tr>
</table>
</div>
</div>
<p id="n0"></p>
<p id="n1"></p>
<p id="n2"></p>
<p id="n3"></p>
<!-- ===================================================== -->
<h2> DWBA & Monte Carlo Simultion </h2>
<h3>DWBA and E<sub>x</sub> List:</h3>
<b style="color:red;">For 2-nucleon transfer</b>, <b>Orbital</b> take the form NL=X, where N is number of node, X is momentum number. n and L are related by &Sigma;<sub>i</sub> (2n<sub>i</sub>+l<sub>i</sub>) = 2N + X + 2n + l, where n<sub>i</sub> and l<sub>i</sub> are the principle number and orbital angular momentum of the each transfered nucleon, and n and l are the internal quanta of the 2-nucleon. e.g. (t,p) reaction to 0f orbtial, the left-hand side would be n<sub>i</sub> = 0 and l<sub>i</sub> = 3 and the sum is 3+3 = 6 = 2N + X + 2n+l. Assume n = l = 0, we have 6 = 2N+L. Thus, 3L=0, 2L=2,1L=4, 0L=6. </p>
Beam J<sup>&pi;</sup>: <input type="text" id="neam_jpi" size="5" value=""/>
<BR>TODO: guess the orbital for Beam J<sup>&pi;</sup>=0
<br>
<input type="checkbox" id="pos" onclick="checkParity()" checked/>Positive parity</td>
<input type="checkbox" id="neg" onclick="checkParity()" checked/>Negative parity</td>
<input type="checkbox" id="unk" onclick="checkParity()" checked/>Unknown parity</td>
<br>
<button type="button" onclick="addStates()">Add known states</button>
Max Ex: <input type="text" id="maxEx" size="5" value="5"/>MeV
<p id='waiting'></p>
<table id="ExTable2">
<tr>
<td><b> E<sub>x</sub> [MeV] </b></td>
<td><b> &nbsp;&nbsp;&nbsp;J<sup>&#960;</sup></b></td>
<td><b> Orbital </b></td>
</tr>
</tr>
<td><input type="text" name="Ex" size="5" value="0"/></td>
<td><input type="text" name="Jpi" size="5" value="3/2+"/></td>
<td><input type="text" name="Orb" size="6" value="0d3/2"/></td>
<td><button type="button" onclick="addRow2(this)">Insert Ex</button></td>
<td><button type="button" onclick="deleteRow2(this)">Remove Ex</button></td>
</tr>
<!-- <tr>
<td></td>
<td></td>
<td></td>
<td><button type="button" onclick="copyEx()">Copy Ex</button></td>
<td><button type="button" onclick="pasteEx()">&nbsp; Paste Ex &nbsp;</button></td>
</tr> -->
</table>
<p></p>
<input type="checkbox" name="DWBA" value="On"/>Cal. DWBA
<table>
<tr>
<td>Incoming Channel</td>
<td>
<select name="op1">
<option value="A" selected>D | An & Cai (2006) E < 183, 12 < A < 238</option>
<option value="H">D | Han, Shi, & Shen (2006) E < 200, 12 < A < 209</option>
<option value="B">D | Bojowald et al. (1988) 50 < E < 80, 27 < A < 208</option>
<option value="D">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (REL) </option>
<option value="C">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (NON-REL) </option>
<option value="L">D | Lohr and Haeberli (1974) 9 < E < 13, 40 < A </option>
<option value="Q">D | Perey and Perey (1963) 12 < E < 25, 40 < A </option>
<option value="Z">D | Zhang, Pang, Lou (2016) 5 < E < 170, A < 18, spe 6-7Li </option>
<option value="K">P | Koning & Delaroche (2009) E < 200, 24 < A < 209 | Iso.Dep.</option>
<option value="V">P | Varner et al. (1991) 16 < E < 65, 4 < A < 209</option>
<option value="M">P | Menet et al. (1971) 30 < E < 60, 40 < A </option>
<option value="G">P | Becchetti and Greenlees (1969) E < 50, 40 < A </option>
<option value="P">P | Perey (1963) E < 20, 30 < A < 100 </option>
<option value="x">A=3 | Xu, Guo, Han, & Shen (2011) E < 250, 20 < A < 209 </option>
<option value="l">A=3 | Liang, Li, & Cai (2009) E < 270, All masses </option>
<option value="p">A=3 | Pang et al. (2009) all E, all masses, Iso. Dep. </option>
<option value="c">A=3 | Li, Liang, Cai (2007), E < 40, 48 < A < 232, Tritons </option>
<option value="t">A=3 | Trost et al. (1987) 10 < E < 220, 10 < A < 208 </option>
<option value="h">A=3 | Hyakutake et al. (1980) 90 < E < 120, About 58 < A < 92 </option>
<option value="b">A=3 | Becchetti and Greenlees (1971), E < 40, 40 < A, Iso. Dep. </option>
<option value="s">A=4 | Su & Han (2015) E < 398, 20 < A < 209 </option>
<option value="a">A=4 | Avrigeanu et al. (2009) </option>
<option value="f">A=4 | Bassani and Picard (1969) 24 < E < 31, A = 90 </option>
</select>
<td>
</tr>
<tr>
<td>Outgoing Channel</td>
<td>
<select name="op2">
<option value="A">D | An & Cai (2006) E < 183, 12 < A < 238</option>
<option value="H">D | Han, Shi, & Shen (2006) E < 200, 12 < A < 209</option>
<option value="B">D | Bojowald et al. (1988) 50 < E < 80, 27 < A < 208</option>
<option value="D">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (REL) </option>
<option value="C">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (NON-REL) </option>
<option value="L">D | Lohr and Haeberli (1974) 9 < E < 13, 40 < A </option>
<option value="Q">D | Perey and Perey (1963) 12 < E < 25, 40 < A </option>
<option value="Z">D | Zhang, Pang, Lou (2016) 5 < E < 170, A < 18, spe 6-7Li </option>
<option value="K" selected>P | Koning & Delaroche (2009) E < 200, 24 < A < 209, Iso.Dep.</option>
<option value="V">P | Varner et al. (1991) 16 < E < 65, 4 < A < 209</option>
<option value="M">P | Menet et al. (1971) 30 < E < 60, 40 < A </option>
<option value="G">P | Becchetti and Greenlees (1969) E < 50, 40 < A </option>
<option value="P">P | Perey (1963) E < 20, 30 < A < 100 </option>
<option value="x">A=3 | Xu, Guo, Han, & Shen (2011) E < 250, 20 < A < 209 </option>
<option value="l">A=3 | Liang, Li, & Cai (2009) E < 270, All masses </option>
<option value="p">A=3 | Pang et al. (2009) all E | all masses, Iso. Dep. </option>
<option value="c">A=3 | Li, Liang, Cai (2007), E < 40, 48 < A < 232, Tritons </option>
<option value="t">A=3 | Trost et al. (1987) 10 < E < 220, 10 < A < 208 </option>
<option value="h">A=3 | Hyakutake et al. (1980) 90 < E < 120, About 58 < A < 92 </option>
<option value="b">A=3 | Becchetti and Greenlees (1971), E < 40, 40 < A, Iso. Dep. </option>
<option value="s">A=4 | Su & Han (2015) E < 398, 20 < A < 209 </option>
<option value="a">A=4 | Avrigeanu et al. (2009) </option>
<option value="f">A=4 | Bassani and Picard (1969) 24 < E < 31, A = 90 </option>
</select>
<td>
</tr>
</table>
<table>
<tr>
<input type="checkbox" name="onlyDWBA" value="On"/>Only DWBA and Don't Sim. Angle range (for only DWBA)
</tr>
<tr>
<td>Min [deg]: </td>
<td><input type = "text" name = "minAng" size="6" value="0" /></td>
<td>Max [deg]: </td>
<td><input type = "text" name = "maxAng" size="6" value="90"/></td>
</tr>
</table>
<button type="button" onclick="DWBA_Sim()" style="width:200px;height:60px;">Run DWBA and Simulation</button>
<!-- ===================================================== -->
<hr>
<h1>&theta;<sub>CM</sub> Calculator</h1>
The calculation only give &theta;<sub>CM</sub> after the bending.
<p></p>
<table>
<tr>
<td>Ex [MeV] : </td>
<td><Input type="text" style="width:60px" value="0" id='Ex0' enterkeyhint="done"/></td>
<td>&theta;<sub>CM</sub> Gate [deg] : </td>
<td><Input type="text" style="width:60px" value="10" id='thetaCMGate' enterkeyhint="done"/></td>
<td>X Gate [%] : </td>
<td><Input type="text" style="width:60px" value="95" id='XGate' enterkeyhint="done"/></td>
</tr>
<tr>
<table id='thetaCMTable' style="border:1px solid; text-align:center;">
<tr>
<td style="width:30px"><b>ID</b></td>
<td style="width:120px"><b>pos<sub>0</sub>(gated)</b></td>
<td style="width:120px"><b>pos<sub>1</sub>(gated)</b></td>
<td style="width:60px"><b>&theta;<sub>1</sub>[deg]</b></td>
<td style="width:60px"><b>&theta;<sub>2</sub>[deg]</b></td>
<td style="width:60px"><b>&theta;<sub>avg</sub>[deg]</b></td>
<td style="width:60px"><b>&Delta;&theta;[deg]</b></td>
<td style="width:100px"><b>sin(&theta;<sub>avg</sub>)&Delta;&theta;</b></td>
</tr>
</table>
</tr>
</table>
<!-- ===================================================== -->
<hr>
<p></p>
HELIOSmatics was first built by Ben P. Kay in MS Excel around 2010. It was modified by Ryan Tang later. And now it migrated to the web on Dec, 2022.
<br>
The calculation can be found in the source code (heliosmatics.js or press F12)
<p></p>
</body>
<!-- ######################################################################################### -->
<script src="heliosmatics.js"></script>
<script src="montecarlo.js"></script>
</html>

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WebSimHelper/index.html
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<!DOCTYPE html>
<html>
<head>
<title>SOLARIS Si-Array Mode Simulation </title>
<meta name="description" content="SOLARIS Si-Array mode simulation. This is ported from the original Heliosmatics in MS excel, Monte Carlo simulation using CERN ROOT, and DWBA simulation using the Peolemy.">
<link rel="icon" type="image/x-icon" href="logos/SOLARIS_favicon.png">
</head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<script src="https://cdn.plot.ly/plotly-2.16.1.min.js"></script>
<style>
:root{
--navWidth: 300px;
}
body {
font-family: Arial, Helvetica, sans-serif;
}
/* table, th, td { */
/* border: 1px solid black; */
/* } */
table.center{
margin-left: auto;
margin-right: auto;
}
header {
background-color: #F7CF3C;
padding: 10px;
text-align: center;
font-size: 35px;
color: black;
}
nav {
float: left;
width : var(--navWidth);
height: 100vh;
/* background: #6DB33E; */
background: #1363A7;
padding: 0px;
}
article {
float: none;
padding: 0px;
margin-left: var(--navWidth);
height: 1000px;
height : 100vh;
/* background: #1363A7; */
background: #6DB33E;
}
a {
color : #F7CF3C;
}
.column1{
float : left;
width : 50%;
text-align:right;
}
.column2{
float : right;
width : 50%;
text-align: left;
}
.row:after {
content: "";
display: table;
clear: both;
}
@media (max-width: 1000px) {
.column1 {
width: 100%;
height: 40%;
text-align:center;
}
.column2 {
width: 100%;
text-align:center;
}
nav {
width: 100%;
height: auto;
margin-left : 0;
}
article {
float: left;
margin-left : 0px;
width: 100%;
height: 100vh;
margin-left : 0;
}
}
</style>
<body>
<header>
<div class="row">
<div class="column1"">
<img src="logos/SOLARIS_logo.png" width="300">
</div>
<div class="column2">
<span style="font-size:70px;">Simulation</span>
</div>
</div>
</header>
<section>
<nav id="nav">
<div class="visit-counter"></div>
<p></p>
<table class="center">
<tr>
<td style="text-align:right"><a href="heliosmatics.html" target="uploaded">HELIOSmatics</a></td>
</tr>
<tr>
<td style="text-align:right"><a href="simpleSim.html" target="uploaded">DWBA and Monte Carlo Simulation</a></td>
</tr>
<tr>
<td style="text-align:right"><a href="miscCal.html" target="uploaded">Misc. Calulations</a></td>
</tr>
<tr>
<td style="text-align:right"><a href="instruction.html" target="uploaded">Intructions & Credits</a></td>
</tr>
<table>
<p></p><!-- ////////////////////////////////////////// -->
<form action = "displayIsoData.py" method = "POST" target = "NuclearData">
<table class="center">
<tr>
<td style="text-align:right">Isotopes Name:</td>
<td><input type = "text" name = "ASym" id="ASym" size="13" value="24F" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right">Max Ex [MeV]:</td>
<td><input type = "text" name = "maxEx" id="maxEx" size="13" value="can be omitted" enterkeyhint="done"/></td>
</tr>
<tr>
<td></td>
<td><button onclick="PlotLevels()" style="width: 130px;">Get Isotopes Data</button></td>
</tr>
</table>
</form>
<div id="Plot_Levels" class="plotStyle"></div>
<iframe name="NuclearData" style="border:none;width:100%;height:100%" ></iframe>
</nav>
<!-- ////////////////////////////////////////// -->
<article id="article" >
<iframe id="main" name="uploaded" style="border:none;width:100%;" src="heliosmatics.html"></iframe>
</article>
</section>
<script src="EnergyLevelsPlot.js"></script>
<script>
let frame = document.getElementById("main");
let frameNav = document.getElementById("nav");
let frameArticle = document.getElementById("article");
let x = window.matchMedia("(max-width: 1000px)");
adjustHeight();
x.addListener(adjustHeight);
function adjustHeight(){
let hhh = frame.contentWindow.document.body.scrollHeight * 1.1 + 'px';
frame.style.height = hhh;
frameArticle.style.height = hhh;
if( x.matches){
frameNav.style.height = "40%";
}else{
frameNav.style.height = hhh;
}
}
frame.onload = adjustHeight;
</script>
</body>
</html>

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WebSimHelper/instruction.html
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<!DOCTYPE html>
<html>
<body>
<style>
body{
font-family: Arial, Helvetica, sans-serif;
}
a {
color : #1363A7;
}
hr {
height:4px;
background-color:#F7CF3C;
border-style:none;
border-width:none;
}
img {
height: 100px;
}
@media screen and (max-width: 1000px) {
img {
height: 50px;
}
}
</style>
<h1>Intructions:</h1>
<p>
<ul>
<li>Use the <a href="heliosmatics.html" target="uploaded">HELIOSmatics</a> to check the detector and field settings.</li>
<li>The easiest way to do DWBA and Monte Carlo Simulation is use the <a href="simpleSim.html" target="uploaded">Simplied Interface</a>
<li>The kenimatic calculation is documented in <a href="https://wiki.anl.gov/wiki_heliosdaq/images/3/3f/Kinematics_of_HELIOS.pdf" target="_blank" >Here</a>.</li>
<li>The DWBA calucation is using Ptolemy. <a href="https://www.phy.anl.gov/theory/research/ptolemy/" target="_blank">Here</a> for more detail. </li>
<li>Past calculations can be found <a href="files/" target="uploaded">Here</a>. Clear every Monday.</li>
</ul>
</p>
<hr>
<h1>Credits:</h1>
<h4>This page is created and hosted by Fox's Lab (FSU) in collabortion with SOLARIS (FRIB).</h4>
<h4>The SOLARIS project is based on HELIOS (ANL) and is leaded by ANL.</h4>
<h4>The ISS (ISOLDE Solenoidal Spectrometer) is located as CERN.</h4>
<a href="https://fsunuc.physics.fsu.edu" target="_blank"><img src="logos/FSU_logo_640.png"></a>
<a href="https://fribs.msu.edu/news/2021/solaris.html" target="_blank"><img src="logos/FRIB_logo.jpg"></a>
<a href="https://home.cern/science/experiments/isolde" target="_blank"><img src="logos/CERN_logo.svg"></a>
<a href="https://www.anl.gov/phy" target="_blank"><img src="logos/ANL_logo.gif"></a>
<a href="https://www.anl.gov/phy/solaris" target="_blank"><img src="logos/SOLARIS_logo.png"></a>
<a href="https://isolde-solenoidal-spectrometer.web.cern.ch/" target="_blank"><img src="logos/ISS_logo.png"></a>
<a href="https://www.anl.gov/phy/helical-orbit-spectrometer" target="_blank"><img src="logos/HELIOS_logo.jpg"></a>
<p></p>
The simulation was started from Ben Kay (ANL) around 2010 using excel spreadsheet.
<br>
Ryan Tang (former ANL postdoc, now at FSU) developed a Monte Carlo simulation with DWBA using CERN ROOT framework.
<br>
And the whole simulation migrated to here at Dec, 2022.
<p></p>
Contact: Ryan Tang (rtang at fsu.edu)
<p> any suggestions and feedback are very welcome.</p>
<hr>
<h2> Todo : </h2>
<ul>
<li>File name of the images of past calculations include reaction</li>
<li>Change the legend position of the DWBA calcualtion</li>
<li>A 3-D simulation? </li>
</ul>
</body>
</html>

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#!/usr/bin/env /usr/bin/python3
import pandas as pd
import urllib.request
import re
import numpy
me = 0.51099895000 # +- 15
mp = 938.27208816 # +- 29
mn = 939.56542052 # +- 54
ma = 3727.37915
livechart = "https://nds.iaea.org/relnsd/v0/data?"
def lc_read_csv(url):
req = urllib.request.Request(url)
req.add_header('User-Agent', 'Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:77.0) Gecko/20100101 Firefox/77.0')
return pd.read_csv(urllib.request.urlopen(req))
# Read the saved CSV file back into a DataFrame
try :
haha = pd.read_csv('IAEA_NuclearData.csv')
except FileNotFoundError:
# the service URL
url = livechart + "fields=ground_states&nuclides=all"
haha = lc_read_csv(url)
haha.insert(0, 'A', haha['z'] + haha['n'])
haha.to_csv('IAEA_NuclearData.csv', index=False)
haha = pd.read_csv('IAEA_NuclearData.csv')
# print(haha.columns)
## ['A', 'z', 'n', 'symbol', 'radius', 'unc_r', 'abundance', 'unc_a',
## 'energy_shift', 'energy', 'unc_e', 'ripl_shift', 'jp', 'half_life',
## 'operator_hl', 'unc_hl', 'unit_hl', 'half_life_sec', 'unc_hls',
## 'decay_1', 'decay_1_%', 'unc_1', 'decay_2', 'decay_2_%', 'unc_2',
## 'decay_3', 'decay_3_%', 'unc_3', 'isospin', 'magnetic_dipole', 'unc_md',
## 'electric_quadrupole', 'unc_eq', 'qbm', 'unc_qb', 'qbm_n', 'unc_qbmn',
## 'qa', 'unc_qa', 'qec', 'unc_qec', 'sn', 'unc_sn', 'sp', 'unc_sp',
## 'binding', 'unc_ba', 'atomic_mass', 'unc_am', 'massexcess', 'unc_me',
## 'me_systematics', 'discovery', 'ENSDFpublicationcut-off',
## 'ENSDFauthors', 'Extraction_date']
def GetExList(ASym : str, maxEx : float) ->pd.DataFrame:
try:
exList = lc_read_csv(livechart + "fields=levels&nuclides=" + ASym)
exJpi = exList[['energy', 'jp']]
exJpi = exJpi[exJpi['energy'] < (maxEx * 1000)]
return exJpi
except:
return pd.DataFrame()
def BreakDownName(ASym : str):
match = re.match(r'(\d+)(\D+)', ASym)
return [int(match.group(1)), match.group(2) ]
def GetAZ(ASym : str):
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
Z = int(dudu['z'].iloc[0])
return [A, Z]
except:
return [A, numpy.nan]
def GetBindingPerA(ASym : str) -> float:
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
Z = int(dudu['z'].iloc[0])
N = A - Z
return dudu['binding'].iloc[0]/1000
except:
return numpy.nan
def GetMassFromSym(ASym : str) -> float:
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
Z = int(dudu['z'].iloc[0])
N = A - Z
binding = dudu['binding'].iloc[0]/1000
return Z*mp + N*mn - binding*A
except:
return numpy.nan
def GetMassFromAZ(A : int, Z : int) -> float:
try:
dudu = haha[(haha['z']==Z) & (haha['A']==A)]
Z = int(dudu['z'].iloc[0])
N = A - Z
binding = dudu['binding'].iloc[0]/1000
return Z*mp + N*mn - binding*A
except:
return numpy.nan
def GetSymbol(A : int, Z : int) -> str:
try:
dudu = haha[(haha['z']==Z) & (haha['A']==A)]
return "%d%s" % (A , dudu['symbol'].iloc[0])
except:
return "0x"
def GetJpi(ASym : str):
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
return dudu['jp'].iloc[0]
except:
return "unknown"
def GetHalfLife(ASym : str) -> float:
[A, sym] = BreakDownName(ASym)
try:
dudu = haha[(haha['symbol']==sym) & (haha['A']==A)]
return dudu['half_life_sec'].iloc[0]
except:
return "unknown"
def GetSn(ASym : str) -> float:
[A, Z] = GetAZ(ASym)
if numpy.isnan(Z) :
return numpy.nan
else:
mass0 = GetMassFromAZ(A, Z)
mass1 = GetMassFromAZ(A-1, Z)
return mass1 + mn - mass0
def GetSp(ASym : str):
[A, Z] = GetAZ(ASym)
if numpy.isnan(Z) :
return numpy.nan
else:
mass0 = GetMassFromAZ(A, Z)
mass1 = GetMassFromAZ(A-1, Z-1)
return mass1 + mp - mass0
def GetSa(ASym : str):
[A, Z] = GetAZ(ASym)
if numpy.isnan(Z) :
return numpy.nan
else:
mass0 = GetMassFromAZ(A, Z)
mass1 = GetMassFromAZ(A-4, Z-2)
return mass1 + ma - mass0
def PrintIso(ASym: str):
[A, Z] = GetAZ(ASym)
print("========================= ", ASym)
print("A : %d, Z : %d, N : %d" % (A, Z, A-Z))
print(" Jpi : ", GetJpi(ASym))
print("half-live : %.2f sec" % (GetHalfLife(ASym)))
print(" Mass : %9.2f MeV" % (GetMassFromSym(ASym) ))
print(" Binding : %9.2f MeV/A" % (GetBindingPerA(ASym)))
print(" Binding : %9.2f MeV" % (GetBindingPerA(ASym) * A))
print(" Sn: %9.2f MeV" % GetSn(ASym))
print(" Sp: %9.2f MeV" % GetSp(ASym))
print(" Sa: %9.2f MeV" % GetSa(ASym))
print("=============================")
def PrintIsoWeb(ASym : str):
[A, Z] = GetAZ(ASym)
print("<br>========================= ", ASym)
print("<br>A : %d, Z : %d, N : %d" % (A, Z, A-Z))
print("<br> Jpi : ", GetJpi(ASym))
print("<br>half-live : %.2f sec" % (GetHalfLife(ASym)))
print("<br> Mass : %9.2f MeV" % (GetMassFromSym(ASym) ))
print("<br> Binding : %9.2f MeV/A" % (GetBindingPerA(ASym)))
print("<br> Binding : %9.2f MeV" % (GetBindingPerA(ASym) * A))
print("<br> Sn: %9.2f MeV" % GetSn(ASym))
print("<br> Sp: %9.2f MeV" % GetSp(ASym))
print("<br> Sa: %9.2f MeV" % GetSa(ASym))
print("<br>=============================")
def PrintIsoExWeb(ASym : str, maxEx : float):
exList = GetExList(ASym, maxEx)
if exList.empty:
print("<br> cannot find Ex data")
else:
print("<table>")
for i in range(0,len(exList)):
print("<tr><td style=\"text-align:right\" width=80>%9.3f</td><td style=\"text-align:right\" width=100>%s</td></tr>" % (exList['energy'].iloc[i]/1000, exList['jp'].iloc[i].replace(' ', ',')))
print("</table>")

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WebSimHelper/massProxy.py
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#!/usr/bin/python3
import isotopeLib
import cgi
form = cgi.FieldStorage()
ASym = form.getvalue('ASym')
A=form.getvalue('A')
Z=form.getvalue('Z')
print( "Content-type:text/html\r\n\r\n")
if 'ASym' in form :
if ASym == "p" : ASym = "1H"
if ASym == "d" : ASym = "2H"
if ASym == "t" : ASym = "3H"
if ASym == "a" : ASym = "4He"
[A,Z] = isotopeLib.GetAZ(ASym)
if 'A' in form:
ASym = isotopeLib.GetSymbol(float(A), float(Z))
#===================================
# print(A)
# print(Z)
# print(isotopeLib.GetMassFromSym(ASym))
# print(ASym)
# print(isotopeLib.GetSn(ASym))
# print(isotopeLib.GetSp(ASym))
# print(isotopeLib.GetSa(ASym))
print(A , ",",
Z , ",",
format(isotopeLib.GetMassFromSym(ASym), '.2f'), ",",
ASym, ",",
format(isotopeLib.GetSn(ASym), '.2f'), ",",
format(isotopeLib.GetSp(ASym), '.2f'), ",",
format(isotopeLib.GetSa(ASym), '.2f')
)

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<!DOCTYOE html>
<html>
<style>
body{
font-family: Arial, Helvetica, sans-serif;
}
table{
border-collapse: collapse;
border : 1px solid;
}
td{
padding : 4px;
}
</style>
<body>
<h1> enA, pnA, pps convertor </h1>
<table id="convertor">
<tr>
<td style="text-align:right">Charge state:</td>
<td><input type="text" id="ChargeState" size="10" value="6" enterkeyhint="done"/> </td>
</tr>
<tr>
<td style="text-align:right">Attenuation:</td>
<td><input type="text" id="att" size="10" value="1e+4" enterkeyhint="done" /> </td>
</tr>
<tr style="text-align:center">
<td>enA </td>
<td>pnA </td>
<td>pps </td>
<td>att. pps </td>
</tr>
<tr>
<td><input type="text" id='enA' size="10" value="6" enterkeyhint="done"/></td>
<td><input type="text" id="pnA" size="10" enterkeyhint="done"/></td>
<td><input type="text" id="pps" size="10" enterkeyhint="done"/></td>
<td width="100"></td>
</tr>
</table>
<h1> Yield Calculator </h1>
<table id="yieldTable">
<tr>
<td style="text-align:right"> Integrated Xsec </td>
<td><Input type="text" id="Xsec" size="10" value="4" enterkeyhint="done"/></td>
<td>mb</td>
</tr>
<tr>
<td style="text-align:right"> Beam intensity </td>
<td><Input type="text" id="BeamPPS" size="10" value="1e5" enterkeyhint="done"/></td>
<td>pps</td>
</tr>
<tr>
<td style="text-align:right"> Target thickness </td>
<td><Input type="text" id="thickness" size="10" value="100" enterkeyhint="done"/></td>
<td>ug/cm2</td>
</tr>
<tr>
<td style="text-align:right"> Target molar mass </td>
<td><Input type="text" id="molar" size="10" value="16" enterkeyhint="done"/></td>
<td>g/mol</td>
</tr>
<tr>
<td style="text-align:right"> Nucleus/molecule </td>
<td><Input type="text" id="ddd" size="10" value="2" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right"> Num of nucleus per area </td>
<td></td>
<td>count/cm2</td>
</tr>
<tr>
<td style="text-align:right"> Yield per sec </td>
<td></td>
<td>count/sec</td>
</tr>
<tr>
<td style="text-align:right"> Spectroscopic factor </td>
<td><Input type="text" id="SF" size="10" value="0.6" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right"> Wanted Count </td>
<td><Input type="text" id="wantedCount" size="10" value="1000" enterkeyhint="done"/></td>
</tr>
<tr>
<td style="text-align:right"> stat. uncertainty </td>
<td></td>
<td>%</td>
</tr>
<tr>
<td style="text-align:right"> Beam Time required </td>
<td></td>
<td>day</td>
</tr>
</table>
</body>
<script>
function toSci(xx, digi){
//return xx.toExponential(digi).replace(/e\+?/, ' x 10^');
return xx.toExponential(digi);
}
function convert(type){
let chargeState = document.getElementById('ChargeState').value;
let attenuation = document.getElementById('att').value;
let eee = 6241510000;
let table = document.getElementById('convertor');
if ( type == 1 ){
let enA = document.getElementById('enA').value;
let pnA = enA/chargeState;
let pps = pnA*eee;
var att = pps/attenuation;
document.getElementById('pnA').value = pnA;
document.getElementById('pps').value = toSci(pps,3);
}
if ( type == 2 ){
let pnA = document.getElementById('pnA').value;
let enA = pnA*chargeState;
let pps = pnA*eee;
var att = pps/attenuation;
document.getElementById('enA').value = enA;
document.getElementById('pps').value = toSci(pps,3);
}
if ( type == 3 ){
let pps = document.getElementById('pps').value;
let pnA = pps/eee;
let enA = pnA*chargeState;
var att = pps/attenuation;
document.getElementById('enA').value = enA;
document.getElementById('pnA').value = pnA;
}
table.rows[3].cells[3].innerHTML = '<span style="color:#FF0000">' + toSci(att,3) + '</span>';
}
function yieldCal(type){
let NA = 6.0221409e+23;
let mb2cm = 1e-27;
let xsec = document.getElementById('Xsec').value;
let beamPPS = document.getElementById('BeamPPS').value;
let thickness = document.getElementById('thickness').value;
let molar = document.getElementById('molar').value;
let nParticle = document.getElementById('ddd').value;
let SF = document.getElementById('SF').value;
let wantedCount = document.getElementById('wantedCount').value;
let table = document.getElementById('yieldTable');
let nTarget = thickness * NA * nParticle / molar / 1e6;
let yield = xsec * beamPPS * nTarget * mb2cm;
table.rows[5].cells[1].innerHTML = toSci(nTarget, 3);
table.rows[6].cells[1].innerHTML = yield.toPrecision(4);
let error = Math.sqrt(wantedCount)/wantedCount*100;
table.rows[9].cells[1].innerHTML = error.toPrecision(4);
let day = wantedCount / SF /yield /60/60/24;
//table.rows[10].cells[1].innerHTML = day.toPrecision(4);
table.rows[10].cells[1].innerHTML = '<span style="color:#FF0000">' + day.toPrecision(4) + '</span>';
}
convert(1);
yieldCal(1);
document.getElementById('enA').addEventListener('keypress',
function(e){
//alert( e.keyCode );
if(e.keyCode == 13 ){
convert(1);
}
}, false
);
document.getElementById('pnA').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
convert(2);
}
}, false
);
document.getElementById('pps').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
convert(3);
}
}, false
);
document.getElementById('att').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
convert(1);
}
}, false
);
document.getElementById('ChargeState').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
convert(1);
}
}, false
);
document.getElementById('Xsec').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(0);
}
}, false
);
document.getElementById('BeamPPS').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(1);
}
}, false
);
document.getElementById('thickness').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(2);
}
}, false
);
document.getElementById('molar').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(3);
}
}, false
);
document.getElementById('ddd').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(4);
}
}, false
);
document.getElementById('SF').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(5);
}
}, false
);
document.getElementById('wantedCount').addEventListener('keypress',
function(e){
if(e.keyCode == 13){
yieldCal(6);
}
}, false
);
</script>
</html>

113
WebSimHelper/montecarlo.js
View File

@ -1,113 +0,0 @@
function addRow2(ele) {
let iRow = ele.closest('tr').sectionRowIndex;
let table = document.getElementById("ExTable2");
let row = table.insertRow(iRow+1);
row.innerHTML = '<td><input type="text" name="Ex" size="5" /></td> \
<td><input type="text" name="Jpi" size="5"/></td> \
<td><input type="text" name="Orb" size="6"/></td> \
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td> \
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td>';
}
function deleteRow2(ele){
let table = document.getElementById("ExTable2");
let nRow = table.rows.length;
let iRow = ele.closest('tr').sectionRowIndex;
if ( nRow > 2){
table.deleteRow(iRow);
}
}
let parity;
function checkParity(){
parity = 0;
if( document.getElementById('pos').checked == true ) parity += 1;
if( document.getElementById('neg').checked == true ) parity += 2;
if( document.getElementById('unk').checked == true ) parity += 4;
//console.log(parity);
}
checkParity();
function addStates(){
let AZ = document.getElementById('heavyName').value;
let maxEx = document.getElementById('maxEx').value;
let beamJpi = document.getElementById('beam_Jpi').value;
let str = 'get_nuclear_data.py?isotopes_name=' + AZ + '&maxEx='+maxEx;
let table = document.getElementById("ExTable");
const client = new XMLHttpRequest();
client.addEventListener('loadstart',
function(e){
document.getElementById('waiting').innerHTML = "wait....retrieving data from IAEA..";
}
);
client.addEventListener('error',
function(e){
document.getElementById('waiting').innerHTML = "Error.";
}
);
client.addEventListener('loadend',
function(e){
let result = client.responseText.split(/\r?\n/);
//clear table
let nRow = table.rows.length;
for( let j = nRow; j > 2; j--){
table.deleteRow(j - 2);
}
document.getElementById('waiting').innerHTML = "";
let count = 0;
for( let i = 0; i < result.length; i++){
if( i < 17 ) continue;
if( result[i] == "</table>" ) break;
let kaka = result[i].split(' ').filter(n => n);
let ex = parseFloat(kaka[3])/1000.;
let jpi = kaka[7]?.replace('(', '')?.replace(')', '');
console.log(ex + ", " + jpi);
//check parity
if( (((parity >> 2) & 1) != 1) && kaka[7].slice(-1) == ")" ) continue;
if( (((parity >> 2) & 1) != 1) && jpi == "," ) continue;
if( (((parity) & 1) != 1) && jpi.slice(-1) == "+" ) continue;
if( (((parity >> 1) & 1) != 1) && jpi.slice(-1) == "-" ) continue;
count ++;
nRow = table.rows.length;
let row = table.insertRow(nRow-1);
row.innerHTML = '<td><input type="text" name="Ex" size="5" value="' + ex.toFixed(3) + '"/></td> \
<td><input type="text" name="Jpi" size="5" value="' + jpi + '"/></td> \
<td><input type="text" name="Orb" size="6" /></td> \
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td> \
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td> \
<td>'+ kaka[7] +'</td>';
}
if( count == 0 ){
document.getElementById('waiting').innerHTML = "no states found.";
nRow = table.rows.length;
let row = table.insertRow(nRow-1);
row.innerHTML = '<td><input type="text" name="Ex" size="5" value="0"/></td> \
<td><input type="text" name="Jpi" size="5" value="1/2+"/></td> \
<td><input type="text" name="Orb" size="6" value="1s1/2"/></td> \
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td> \
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td>';
}
}
);
client.open('GET', str);
client.send();
}

529
WebSimHelper/simpleSim.html
View File

@ -1,529 +0,0 @@
<!DOCTYPE html>
<html>
<head>
<title>DWBA and Monte Carlo Simulation</title>
<link rel="icon" type="image/x-icon" href="logos/SOLARIS_favicon.png">
</head>
<style>
body {
font-family: Arial, Helvetica, sans-serif;
background: #6DB33E;
}
</style>
<body>
<h1>DWBA and Monte Carlo Simulation</h1>
<button onclick="GetClipBoard()">Paste Settings from clipboard</button>
<form action = "simpleInput.py" method = "POST" target = "uploaded">
<h3>Reaction: </h3>
<table>
<tr>
<td>Beam Energy</td>
<td><input type = "text" name = "KEA" size="6" value="10" /></td>
<td style="text-align:left">MeV/u</td>
</tr>
<tr>
<td>Beam </td>
<td><input type = "text" name = "beam_AZ" size="6" value="16O"/></td>
<td style="text-align:right">J<sup>&pi;</sup></td>
<td><input type = "text" id="beam_Jpi" name = "beam_Jpi" size="5" value="0+"/><td>
<td style="text-align:right">Ex:</td>
<td><input type = "text" name = "beam_Ex" size="6" value="0.00"/></td>
<td style="text-align:left">MeV</td>
</tr>
<tr>
<td>Target</td>
<td><input type = "text" name = "target_AZ" size="6" value="d"/></td>
</tr>
<tr>
<td>Light recoil</td>
<td><input type = "text" name = "lRecoil_AZ" size="6" value="p"/></td>
</tr>
<tr>
<td> Number of events </td>
<td><input type = "text" name = "numEvent" size="6" value="100000"/></td>
</tr>
</table>
<h3>Detector:</h3>
<table>
<tr>
<input type="radio" name="SSType" value="HELIOS"/>HELIOS
<br>
<input type="radio" name="SSType" value="SOLARIS" checked="checked"/>SOLARIS
<br>
<input type="radio" name="SSType" value="ISS"/>ISS
</tr>
<tr>
<td>B-field </td>
<td><input type = "text" name = "BField" size="5" value="-2.5"/></td>
<td style="text-align:left">T (minus sign = field point to upstream)</td>
</tr>
<tr>
<td>Array Pos.</td>
<td><input type = "text" name = "posArray" size="5" value="-100"/></td>
<td style="text-align:left">mm (negative for upstream)</td>
</tr>
<tr>
<td>Recoil Pos.</td>
<td><input type = "text" name = "posRecoil" size="5" value="500"/></td>
<td style="text-align:left">mm (negative for upstream)</td>
</tr>
</table>
<h3>DWBA and E<sub>x</sub> List:</h3>
<p><b style="color:red;">For 2-nucleon transfer</b>, <b>Orbital</b> take the form NL=X, where N is number of node, X is momentum number. n and L are related by &Sigma;<sub>i</sub> (2n<sub>i</sub>+l<sub>i</sub>) = 2N + X + 2n + l, where n<sub>i</sub> and l<sub>i</sub> are the principle number and orbital angular momentum of the each transfered nucleon, and n and l are the internal quanta of the 2-nucleon. e.g. (t,p) reaction to 0f orbtial, the left-hand side would be n<sub>i</sub> = 0 and l<sub>i</sub> = 3 and the sum is 3+3 = 6 = 2N + X + 2n+l. Assume n = l = 0, we have 6 = 2N+L. Thus, 3L=0, 2L=2,1L=4, 0L=6. </p>
TODO: guess the orbital
<br>
<input type="checkbox" id="pos" onclick="checkParity()" checked/>Positive parity</td>
<input type="checkbox" id="neg" onclick="checkParity()" checked/>Negative parity</td>
<input type="checkbox" id="unk" onclick="checkParity()" checked/>Unknown parity</td>
<br>
<button type="button" onclick="addStates()">Add known states</button>
Isotope: <input type="text" id="AZ" size="5" value="17O"/>
Max Ex: <input type="text" id="maxEx" size="5" value="5"/>MeV
<p id='waiting'></p>
<table id="ExTable">
<tr>
<td><b> E<sub>x</sub> [MeV] </b></td>
<td><b> &nbsp;&nbsp;&nbsp;J<sup>&#960;</sup></b></td>
<td><b> Orbital </b></td>
</tr>
</tr>
<td><input type="text" name="Ex" size="5" value="0"/></td>
<td><input type="text" name="Jpi" size="5" value="3/2+"/></td>
<td><input type="text" name="Orb" size="6" value="0d3/2"/></td>
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td>
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td>
</tr>
<tr>
<td></td>
<td></td>
<td></td>
<td><button type="button" onclick="copyEx()">Copy Ex</button></td>
<td><button type="button" onclick="pasteEx()">&nbsp; Paste Ex &nbsp;</button></td>
</tr>
</table>
<p></p>
<input type="checkbox" name="DWBA" value="On"/>Cal. DWBA
<!--<input type="checkbox" name="onlyDWBA" value="On"/>ONLY Cal. DWBA (tetsing)-->
<table>
<tr>
<td>Incoming Channel</td>
<td>
<select name="op1">
<option value="A" selected>D | An & Cai (2006) E < 183, 12 < A < 238</option>
<option value="H">D | Han, Shi, & Shen (2006) E < 200, 12 < A < 209</option>
<option value="B">D | Bojowald et al. (1988) 50 < E < 80, 27 < A < 208</option>
<option value="D">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (REL) </option>
<option value="C">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (NON-REL) </option>
<option value="L">D | Lohr and Haeberli (1974) 9 < E < 13, 40 < A </option>
<option value="Q">D | Perey and Perey (1963) 12 < E < 25, 40 < A </option>
<option value="Z">D | Zhang, Pang, Lou (2016) 5 < E < 170, A < 18, spe 6-7Li </option>
<option value="K">P | Koning & Delaroche (2009) E < 200, 24 < A < 209 | Iso.Dep.</option>
<option value="V">P | Varner et al. (1991) 16 < E < 65, 4 < A < 209</option>
<option value="M">P | Menet et al. (1971) 30 < E < 60, 40 < A </option>
<option value="G">P | Becchetti and Greenlees (1969) E < 50, 40 < A </option>
<option value="P">P | Perey (1963) E < 20, 30 < A < 100 </option>
<option value="x">A=3 | Xu, Guo, Han, & Shen (2011) E < 250, 20 < A < 209 </option>
<option value="l">A=3 | Liang, Li, & Cai (2009) E < 270, All masses </option>
<option value="p">A=3 | Pang et al. (2009) all E, all masses, Iso. Dep. </option>
<option value="c">A=3 | Li, Liang, Cai (2007), E < 40, 48 < A < 232, Tritons </option>
<option value="t">A=3 | Trost et al. (1987) 10 < E < 220, 10 < A < 208 </option>
<option value="h">A=3 | Hyakutake et al. (1980) 90 < E < 120, About 58 < A < 92 </option>
<option value="b">A=3 | Becchetti and Greenlees (1971), E < 40, 40 < A, Iso. Dep. </option>
<option value="s">A=4 | Su & Han (2015) E < 398, 20 < A < 209 </option>
<option value="a">A=4 | Avrigeanu et al. (2009) </option>
<option value="f">A=4 | Bassani and Picard (1969) 24 < E < 31, A = 90 </option>
</select>
<td>
</tr>
<tr>
<td>Outgoing Channel</td>
<td>
<select name="op2">
<option value="A">D | An & Cai (2006) E < 183, 12 < A < 238</option>
<option value="H">D | Han, Shi, & Shen (2006) E < 200, 12 < A < 209</option>
<option value="B">D | Bojowald et al. (1988) 50 < E < 80, 27 < A < 208</option>
<option value="D">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (REL) </option>
<option value="C">D | Daehnick, Childs, Vrcelj (1980) 11.8 < E < 80, 27 < A < 238 (NON-REL) </option>
<option value="L">D | Lohr and Haeberli (1974) 9 < E < 13, 40 < A </option>
<option value="Q">D | Perey and Perey (1963) 12 < E < 25, 40 < A </option>
<option value="Z">D | Zhang, Pang, Lou (2016) 5 < E < 170, A < 18, spe 6-7Li </option>
<option value="K" selected>P | Koning & Delaroche (2009) E < 200, 24 < A < 209, Iso.Dep.</option>
<option value="V">P | Varner et al. (1991) 16 < E < 65, 4 < A < 209</option>
<option value="M">P | Menet et al. (1971) 30 < E < 60, 40 < A </option>
<option value="G">P | Becchetti and Greenlees (1969) E < 50, 40 < A </option>
<option value="P">P | Perey (1963) E < 20, 30 < A < 100 </option>
<option value="x">A=3 | Xu, Guo, Han, & Shen (2011) E < 250, 20 < A < 209 </option>
<option value="l">A=3 | Liang, Li, & Cai (2009) E < 270, All masses </option>
<option value="p">A=3 | Pang et al. (2009) all E | all masses, Iso. Dep. </option>
<option value="c">A=3 | Li, Liang, Cai (2007), E < 40, 48 < A < 232, Tritons </option>
<option value="t">A=3 | Trost et al. (1987) 10 < E < 220, 10 < A < 208 </option>
<option value="h">A=3 | Hyakutake et al. (1980) 90 < E < 120, About 58 < A < 92 </option>
<option value="b">A=3 | Becchetti and Greenlees (1971), E < 40, 40 < A, Iso. Dep. </option>
<option value="s">A=4 | Su & Han (2015) E < 398, 20 < A < 209 </option>
<option value="a">A=4 | Avrigeanu et al. (2009) </option>
<option value="f">A=4 | Bassani and Picard (1969) 24 < E < 31, A = 90 </option>
</select>
<td>
</tr>
</table>
<table>
<tr>
<input type="checkbox" name="onlyDWBA" value="On"/>Only DWBA and Don't Sim. Angle range (for only DWBA)
</tr>
<tr>
<td>Min [deg]: </td>
<td><input type = "text" name = "minAng" size="6" value="0" /></td>
<td>Max [deg]: </td>
<td><input type = "text" name = "maxAng" size="6" value="90"/></td>
</tr>
</table>
<h3> Plot config:</h3>
<table>
<tr>
<td><input type="checkbox" name="plot" value="pEZ" checked/>E vs Z</td>
<td><input type="checkbox" name="plot" value="pExCal" checked/>Ex (cal.)</td>
<td><input type="checkbox" name="plot" value="pThetaCM" checked/>ThetaCM</td>
</tr>
<tr>
<td><input type="checkbox" name="plot" value="pThetaCM_Z" checked/>ThetaCM vs Z</td>
<td><input type="checkbox" name="plot" value="pRecoilXY" checked/>Recoil X vs Y</td>
<td><input type="checkbox" name="plot" value="pRecoilRThetaCM"/>Recoil-R vs ThetaCM</td>
</tr>
<tr>
<td><input type="checkbox" name="plot" value="pRecoilRZ"/>Recoil R vs Z</td>
<td><input type="checkbox" name="plot" value="pTDiffZ"/>Time diff vs Z</td>
<td><input type="checkbox" name="plot" value="pArrayXY"/>Array X vs Y</td>
</tr>
</table>
<p></p>
<input type="checkbox" name="gate" value="hit==1" checked/>Array Hit<br>
<input type="checkbox" name="gate" value="loop<=1" checked/>Loop = 1<br>
<input type="checkbox" name="gate" value="thetaCM>10" checked/> ThetaCM > 10 deg<br>
<p></p>
<input type = "submit" value = "Run DWBA and Simulation" style="width:200px;height:60px;" formtarget="_blank"/>
</form>
<hr style="height:4px;background-color:#F7CF3C; border-style:none; border-width:none">
<h2>Advanced control</h2>
<!-- ////////////////////////////////////////// -->
<table>
<tr>
<td>Download Sample files:</td>
<td style="text-align:left">
<a href="sample_files/reactionConfig_sample.txt" download="reactionConfig.txt">Reaction File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/detectorGeo_SOLARIS_sample.txt" download="detectorGeo_SOLAIRS.txt">DetectorGeo (SOLARIS) File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/detectorGeo_HELIOS_sample.txt" download="detectorGeo_HELIOS.txt">DetectorGeo (HELIOS) File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/Ex_sample.txt" download="Ex.txt">Ex File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/DWBA_sample.txt" download="DWBA">DWBA File</a>
</td>
</tr>
<tr>
<td></td>
<td style="text-align:left">
<a href="sample_files/PlotConfig_sample.txt" download="PlotConfig.txt">Plot Config File</a>
</td>
</tr>
</table>
<p></p><!-- ////////////////////////////////////////// -->
<form enctype = "multipart/form-data" action = "Simulation_gateway.py" method = "post" target="uploaded">
<table>
<tr>
<td style="text-align:right" width="200">Reaction File </td>
<td><input type = "file" name = "filename1" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">DetectorGeo File </th>
<td><input type = "file" name = "filename2" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">Ex File </th>
<td><input type = "file" name = "filename3" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">DWBA File ^ </th>
<td><input type = "file" name = "filename4" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">*.in File ^ </th>
<td><input type = "file" name = "filename4a" /> </td>
</tr>
<tr>
<td style="text-align:right" width="200">Plot Config File # </th>
<td><input type = "file" name = "filename5" /> </td>
</tr>
<tr>
<td>^ can be alone <br># can be omitted</th>
<td><input type = "submit" value = "Upload & Run Simulation" style="height:50px; width:200px" formtarget="_blank"/> </td>
</tr>
</table>
</form>
<ul>
<li>File name can be customized.</li>
<li>For kinematic simulation, only the reactionConfig.txt, detectorGeo.txt, and Ex.txt are needed.</li>
<li>For DWBA calculation, only the DWBA file is needed.</li>
<li>If reactionConfig.txt, detectorGeo.txt, and DWBA file are presented, will do DWBA and use the result for simulation.</li>
<li>When the DWBA file is presented, the kinematic simulation will use the DWBA result and also the excitation energy. i.e. the user provide Ex.txt will not be used.</li>
<li>User can use a customs in File for DWBA calculation. Once the in File exist, it ignores the DWBA file.</li>
<li>To change DWBA angular range, download the in file, edit it. But becareful, DWBA for kinematic simulation must be 0 -180 deg.</li>
</ul>
<hr style="height:4px;background-color:#F7CF3C; border-style:none; border-width:none">
The source code for calculation can be found in <a href="https://github.com/calemhoffman/digios/tree/master/analysis/Cleopatra/Transfer.C" target="_blank">Here</a>
</body>
<script>
function GetClipBoard(){
navigator.clipboard.readText().then(
function(result){
//console.log(result);
if( result.substring(0,16) == "====HELIOSMATICS" ){
let haha = result.substring(17).split(', ');
console.log(haha);
//alert(haha);
document.getElementsByName('beam_AZ')[0].value = haha[0];
document.getElementsByName('beam_Ex')[0].value = haha[1];
document.getElementsByName('target_AZ')[0].value = haha[2];
document.getElementsByName('lRecoil_AZ')[0].value = haha[3];
document.getElementsByName('KEA')[0].value = haha[5];
document.getElementsByName('BField')[0].value = haha[4];
document.getElementsByName('posArray')[0].value = haha[6];
document.getElementsByName('posRecoil')[0].value = haha[7];
document.getElementById('AZ').value = haha[8];
}
}
);
}
function copyEx(){
let inputs = document.getElementsByTagName("input");
let copyText = "====ExList|";
for(let i = 0; i < inputs.length; i++){
if( inputs[i].type == 'text'){
if( inputs[i].name == "Ex" || inputs[i].name == "Jpi" || inputs[i].name == "Orb" ){
//if( inputs[i].value == "" ) continue;
copyText += inputs[i].value;
if(inputs[i].name == "Orb") {
copyText += "|";
}else{
copyText += ",";
}
}
}
}
//console.log(copyText);
navigator.clipboard.writeText(copyText).then(
() => {
alert('Ex are copied to clipboard.\n' + copyText);
}).catch(
() =>{
alert('Cannot copy.');
});
}
function pasteEx(){
navigator.clipboard.readText().then(
function(result){
//console.log(result);
if( result.substring(0,10) == "====ExList" ){
let haha = result.substring(11).split('|');
//console.log(haha);
let table = document.getElementById("ExTable");
let nRow = table.rows.length;
//console.log(nRow);
//remove all Row except the 1st
for( let i = nRow; i > 2; i--){
table.deleteRow(i - 2);
}
for( let i = 0; i < haha.length; i++){
if( haha[i] == "" ) continue;
let kaka = haha[i].split(',');
//console.log(kaka);
nRow = table.rows.length;
let row = table.insertRow(nRow-1);
row.innerHTML = '<td><input type="text" name="Ex" size="5" value="' + kaka[0] + '"/></td> \
<td><input type="text" name="Jpi" size="5" value="' + kaka[1] + '"/></td> \
<td><input type="text" name="Orb" size="6" value="' + kaka[2] + '"/></td>\
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td> \
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td>';
}
}else{
alert("Setting not fond in clipboard.");
}
}
);
}
let parity;
function checkParity(){
parity = 0;
if( document.getElementById('pos').checked == true ) parity += 1;
if( document.getElementById('neg').checked == true ) parity += 2;
if( document.getElementById('unk').checked == true ) parity += 4;
//console.log(parity);
}
checkParity();
function addStates(){
let AZ = document.getElementById('AZ').value;
let maxEx = document.getElementById('maxEx').value;
let beamJpi = document.getElementById('beam_Jpi').value;
let str = 'get_nuclear_data.py?isotopes_name=' + AZ + '&maxEx='+maxEx;
let table = document.getElementById("ExTable");
const client = new XMLHttpRequest();
client.addEventListener('loadstart',
function(e){
document.getElementById('waiting').innerHTML = "wait....retrieving data from IAEA..";
}
);
client.addEventListener('error',
function(e){
document.getElementById('waiting').innerHTML = "Error.";
}
);
client.addEventListener('loadend',
function(e){
let result = client.responseText.split(/\r?\n/);
//clear table
let nRow = table.rows.length;
for( let j = nRow; j > 2; j--){
table.deleteRow(j - 2);
}
document.getElementById('waiting').innerHTML = "";
let count = 0;
for( let i = 0; i < result.length; i++){
if( i < 17 ) continue;
if( result[i] == "</table>" ) break;
let kaka = result[i].split(' ').filter(n => n);
let ex = parseFloat(kaka[3])/1000.;
let jpi = kaka[7]?.replace('(', '')?.replace(')', '');
console.log(ex + ", " + jpi);
//check parity
if( (((parity >> 2) & 1) != 1) && kaka[7].slice(-1) == ")" ) continue;
if( (((parity >> 2) & 1) != 1) && jpi == "," ) continue;
if( (((parity) & 1) != 1) && jpi.slice(-1) == "+" ) continue;
if( (((parity >> 1) & 1) != 1) && jpi.slice(-1) == "-" ) continue;
count ++;
nRow = table.rows.length;
let row = table.insertRow(nRow-1);
row.innerHTML = '<td><input type="text" name="Ex" size="5" value="' + ex.toFixed(3) + '"/></td> \
<td><input type="text" name="Jpi" size="5" value="' + jpi + '"/></td> \
<td><input type="text" name="Orb" size="6" /></td> \
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td> \
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td> \
<td>'+ kaka[7] +'</td>';
}
if( count == 0 ){
document.getElementById('waiting').innerHTML = "no states found.";
nRow = table.rows.length;
let row = table.insertRow(nRow-1);
row.innerHTML = '<td><input type="text" name="Ex" size="5" value="0"/></td> \
<td><input type="text" name="Jpi" size="5" value="1/2+"/></td> \
<td><input type="text" name="Orb" size="6" value="1s1/2"/></td> \
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td> \
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td>';
}
}
);
client.open('GET', str);
client.send();
}
//document.getElementById("ExTable").find('tr').click( () => {alert( $this.index);} );
function addRow(ele) {
let iRow = ele.closest('tr').sectionRowIndex;
let table = document.getElementById("ExTable");
let row = table.insertRow(iRow+1);
row.innerHTML = '<td><input type="text" name="Ex" size="5" /></td> \
<td><input type="text" name="Jpi" size="5"/></td> \
<td><input type="text" name="Orb" size="6"/></td> \
<td><button type="button" onclick="addRow(this)">Insert Ex</button></td> \
<td><button type="button" onclick="deleteRow(this)">Remove Ex</button></td>';
}
function deleteRow(ele){
let table = document.getElementById("ExTable");
let nRow = table.rows.length;
let iRow = ele.closest('tr').sectionRowIndex;
if ( nRow > 3){
table.deleteRow(iRow);
}
}
</script>
</html>

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#ifndef ANALYSIS_LIB_H
#define ANALYSIS_LIB_H
#include <cstdio>
#include <vector>
#include <fstream>
#include <string>
#include <TMacro.h>
#include <TList.h>
#include <TFile.h>
#include <TMath.h>
#include <TObjArray.h>
#include <TCutG.h>
namespace AnalysisLib {
std::vector<std::string> SplitStr(std::string tempLine, std::string splitter, int shift = 0){
std::vector<std::string> output;
size_t pos;
do{
pos = tempLine.find(splitter); /// fine splitter
if( pos == 0 ){ ///check if it is splitter again
tempLine = tempLine.substr(pos+1);
continue;
}
std::string secStr;
if( pos == std::string::npos ){
secStr = tempLine;
}else{
secStr = tempLine.substr(0, pos+shift);
tempLine = tempLine.substr(pos+shift);
}
///check if secStr is begin with space
while( secStr.substr(0, 1) == " ") secStr = secStr.substr(1);
///check if secStr is end with space
while( secStr.back() == ' ') secStr = secStr.substr(0, secStr.size()-1);
output.push_back(secStr);
///printf(" |%s---\n", secStr.c_str());
}while(pos != std::string::npos );
return output;
};
struct Array{
double detPerpDist; /// distance from axis
double detWidth; /// width
double detLength; /// length
double blocker;
double firstPos; /// meter
double eSigma; /// intrinsic energy resolution MeV
double zSigma; /// intrinsic position resolution mm
bool detFaceOut; ///detector_facing_Out_or_In
std::vector<double> pos; /// near position in meter
int nDet, mDet; /// nDet = number of different pos, mDet, number of same pos
std::vector<double> detPos; ///absolute position of detector
double zMin, zMax;
void DeduceAbsolutePos(){
nDet = pos.size();
detPos.clear();
for(int id = 0; id < nDet; id++){
if( firstPos > 0 ) detPos.push_back(firstPos + pos[id]);
if( firstPos < 0 ) detPos.push_back(firstPos - pos[nDet - 1 - id]);
///printf("%d | %f, %f \n", id, pos[id], detPos[id]);
}
zMin = TMath::Min(detPos.front(), detPos.back()) - (firstPos < 0 ? detLength : 0);
zMax = TMath::Max(detPos.front(), detPos.back()) + (firstPos > 0 ? detLength : 0);
}
void PrintArray(){
for(int i = 0; i < nDet ; i++){
if( firstPos > 0 ){
printf("%d, %8.2f mm - %8.2f mm \n", i, detPos[i], detPos[i] + detLength);
}else{
printf("%d, %8.2f mm - %8.2f mm \n", i, detPos[i] - detLength , detPos[i]);
}
}
printf(" Blocker Position: %8.2f mm \n", firstPos > 0 ? firstPos - blocker : firstPos + blocker );
printf(" First Position: %8.2f mm \n", firstPos);
printf(" number of det : %d x %d \n", mDet, nDet);
printf(" detector facing : %s\n", detFaceOut ? "Out" : "In");
printf(" energy resol.: %f MeV\n", eSigma);
printf(" pos-Z resol.: %f mm \n", zSigma);
}
};
struct DetGeo{
double Bfield; /// T
int BfieldSign ; /// sign of B-field
double BfieldTheta; /// rad, 0 = z-axis, pi/2 = y axis, pi = -z axis
double bore; /// bore , mm
double recoilPos; /// recoil, downstream
double recoilInnerRadius; /// radius recoil inner
double recoilOuterRadius; /// radius recoil outter
double recoilPos1, recoilPos2; /// imaginary recoils
double elumPos1, elumPos2; /// imaginary elum, only sensitive to light recoil
//===================1st array
Array array1;
//==================2nd array
bool use2ndArray;
Array array2;
double zMin, zMax; /// range of detectors
bool isCoincidentWithRecoil;
};
struct ReactionConfig{
int beamA;
int beamZ;
int targetA;
int targetZ;
int recoilLightA;
int recoilLightZ;
int recoilHeavyA;
int recoilHeavyZ;
float beamEnergy; ///MeV/u
float beamEnergySigma; ///beam-energy_sigma_in_MeV/u
float beamAngle; ///beam-angle_in_mrad
float beamAngleSigma; ///beam-emittance_in_mrad
float beamX; ///x_offset_of_Beam_in_mm
float beamY; ///y_offset_of_Beam_in_mm
int numEvents; ///number_of_Event_being_generated
bool isTargetScattering; ///isTargetScattering
float targetDensity; ///target_density_in_g/cm3
float targetThickness; ///targetThickness_in_cm
std::string beamStoppingPowerFile; ///stopping_power_for_beam
std::string recoilLightStoppingPowerFile; ///stopping_power_for_light_recoil
std::string recoilHeavyStoppingPowerFile; ///stopping_power_for_heavy_recoil
bool isDecay; ///isDacay
int heavyDecayA; ///decayNucleus_A
int heavyDecayZ; ///decayNucleus_Z
bool isRedo; ///isReDo
std::vector<float> beamEx; ///excitation_energy_of_A[MeV]
};
///Using TMacro to load the detectorGeo frist,
///this indrect method is good for loading detectorGeo from TMacro in root file
DetGeo LoadDetectorGeo(TMacro * macro){
DetGeo detGeo;
if( macro == NULL ) return detGeo;
TList * haha = macro->GetListOfLines();
int numLine = (haha)->GetSize();
detGeo.array1.pos.clear();
detGeo.array2.pos.clear();
detGeo.use2ndArray = false;
int detFlag = 0;
int detLine = 0;
for( int i = 0 ; i < numLine; i++){
std::vector<std::string> str = SplitStr(macro->GetListOfLines()->At(i)->GetName(), " ");
//printf("%3d | %s\n", i, str[0].c_str());
if( str[0].find("####") != std::string::npos ) break;
if( str[0].find("#===") != std::string::npos ) {
detFlag ++;
detLine = 0;
continue;;
}
if( detFlag == 0 ){
if ( i == 0 ) {
detGeo.Bfield = atof(str[0].c_str());
detGeo.BfieldSign = detGeo.Bfield > 0 ? 1: -1;
}
if ( i == 1 ) detGeo.BfieldTheta = atof(str[0].c_str());
if ( i == 2 ) detGeo.bore = atof(str[0].c_str());
if ( i == 3 ) detGeo.recoilPos = atof(str[0].c_str());
if ( i == 4 ) detGeo.recoilInnerRadius = atof(str[0].c_str());
if ( i == 5 ) detGeo.recoilOuterRadius = atof(str[0].c_str());
if ( i == 6 ) detGeo.isCoincidentWithRecoil = str[0] == "false" ? false: true;
if ( i == 7 ) detGeo.recoilPos1 = atof(str[0].c_str());
if ( i == 8 ) detGeo.recoilPos2 = atof(str[0].c_str());
if ( i == 9 ) detGeo.elumPos1 = atof(str[0].c_str());
if ( i == 10 ) detGeo.elumPos2 = atof(str[0].c_str());
}
if( detFlag == 1){
if ( detLine == 0 ) detGeo.array1.detPerpDist = atof(str[0].c_str());
if ( detLine == 1 ) detGeo.array1.detWidth = atof(str[0].c_str());
if ( detLine == 2 ) detGeo.array1.detLength = atof(str[0].c_str());
if ( detLine == 3 ) detGeo.array1.blocker = atof(str[0].c_str());
if ( detLine == 4 ) detGeo.array1.firstPos = atof(str[0].c_str());
if ( detLine == 5 ) detGeo.array1.eSigma = atof(str[0].c_str());
if ( detLine == 6 ) detGeo.array1.zSigma = atof(str[0].c_str());
if ( detLine == 7 ) detGeo.array1.detFaceOut = str[0] == "Out" ? true : false;
if ( detLine == 8 ) detGeo.array1.mDet = atoi(str[0].c_str());
if ( detLine >= 9 ) (detGeo.array1.pos).push_back(atof(str[0].c_str()));
detLine ++;
}
if( detFlag == 2){
if ( detLine == 0 ) detGeo.use2ndArray = str[0] == "true" ? true : false;
if ( detLine == 1 ) detGeo.array2.detPerpDist = atof(str[0].c_str());
if ( detLine == 2 ) detGeo.array2.detWidth = atof(str[0].c_str());
if ( detLine == 3 ) detGeo.array2.detLength = atof(str[0].c_str());
if ( detLine == 4 ) detGeo.array2.blocker = atof(str[0].c_str());
if ( detLine == 5 ) detGeo.array2.firstPos = atof(str[0].c_str());
if ( detLine == 6 ) detGeo.array2.eSigma = atof(str[0].c_str());
if ( detLine == 7 ) detGeo.array2.zSigma = atof(str[0].c_str());
if ( detLine == 8 ) detGeo.array2.detFaceOut = str[0] == "Out" ? true : false;
if ( detLine == 9 ) detGeo.array2.mDet = atoi(str[0].c_str());
if ( detLine >= 10 ) (detGeo.array2.pos).push_back(atof(str[0].c_str()));
detLine ++;
}
}
detGeo.array1.DeduceAbsolutePos();
detGeo.zMin = detGeo.array1.zMin;
detGeo.zMax = detGeo.array1.zMax;
if( detGeo.use2ndArray) {
detGeo.array2.DeduceAbsolutePos();
detGeo.zMin = TMath::Min(detGeo.array1.zMin, detGeo.array2.zMin);
detGeo.zMax = TMath::Min(detGeo.array1.zMax, detGeo.array2.zMax);
}
return detGeo;
}
void PrintDetGeo(DetGeo detGeo, bool printAll = true){
printf("=====================================================\n");
printf(" B-field: %8.2f T, Theta : %6.2f deg \n", detGeo.Bfield, detGeo.BfieldTheta);
if( detGeo.BfieldTheta != 0.0 ) {
printf(" +---- field angle != 0 is not supported!!! \n");
}
printf(" Recoil detector pos: %8.2f mm, radius: %6.2f - %6.2f mm \n", detGeo.recoilPos, detGeo.recoilInnerRadius, detGeo.recoilOuterRadius);
if( printAll ){
printf("------------------------------------- Detector Position \n");
detGeo.array1.PrintArray();
if( detGeo.use2ndArray){
printf("--------------------------------- 2nd Detector Position \n");
detGeo.array2.PrintArray();
}
}else{
if( detGeo.use2ndArray){
printf("--------------------------------- 2nd Detector Position \n");
detGeo.array2.PrintArray();
}else{
printf("------------------------------------- Detector Position \n");
detGeo.array1.PrintArray();
}
}
if( detGeo.elumPos1 != 0 || detGeo.elumPos2 != 0 || detGeo.recoilPos1 != 0 || detGeo.recoilPos2 != 0){
printf("=================================== Auxillary/Imaginary Detectors\n");
}
if( detGeo.elumPos1 != 0 ) printf(" Elum 1 pos.: %f mm \n", detGeo.elumPos1);
if( detGeo.elumPos2 != 0 ) printf(" Elum 2 pos.: %f mm \n", detGeo.elumPos2);
if( detGeo.recoilPos1 != 0 ) printf(" Recoil 1 pos.: %f mm \n", detGeo.recoilPos1);
if( detGeo.recoilPos2 != 0 ) printf(" Recoil 2 pos.: %f mm \n", detGeo.recoilPos2);
printf("=====================================================\n");
}
ReactionConfig LoadReactionConfig(TMacro * macro){
ReactionConfig reaction;
if( macro == NULL ) return reaction;
int numLine = macro->GetListOfLines()->GetSize();
for( int i = 0; i < numLine; i ++){
std::vector<std::string> str = SplitStr(macro->GetListOfLines()->At(i)->GetName(), " ");
///printf("%d | %s\n", i, str[0].c_str());
if( str[0].find_first_of("#") == 0 ) break;
if( i == 0 ) reaction.beamA = atoi(str[0].c_str());
if( i == 1 ) reaction.beamZ = atoi(str[0].c_str());
if( i == 2 ) reaction.targetA = atoi(str[0].c_str());
if( i == 3 ) reaction.targetZ = atoi(str[0].c_str());
if( i == 4 ) reaction.recoilLightA = atoi(str[0].c_str());
if( i == 5 ) reaction.recoilLightZ = atoi(str[0].c_str());
if( i == 6 ) reaction.beamEnergy = atof(str[0].c_str());
if( i == 7 ) reaction.beamEnergySigma = atof(str[0].c_str());
if( i == 8 ) reaction.beamAngle = atof(str[0].c_str());
if( i == 9 ) reaction.beamAngleSigma = atof(str[0].c_str());
if( i == 10 ) reaction.beamX = atof(str[0].c_str());
if( i == 11 ) reaction.beamY = atof(str[0].c_str());
if( i == 12 ) reaction.numEvents = atoi(str[0].c_str());
if( i == 13 ) {
if( str[0].compare("false") == 0 ) reaction.isTargetScattering = false;
if( str[0].compare("true") == 0 ) reaction.isTargetScattering = true;
}
if( i == 14 ) reaction.targetDensity = atof(str[0].c_str());
if( i == 15 ) reaction.targetThickness = atof(str[0].c_str());
if( i == 16 ) reaction.beamStoppingPowerFile = str[0];
if( i == 17 ) reaction.recoilLightStoppingPowerFile = str[0];
if( i == 18 ) reaction.recoilHeavyStoppingPowerFile = str[0];
if( i == 19 ) {
if( str[0].compare("false") == 0 ) reaction.isDecay = false;
if( str[0].compare("true") == 0 ) reaction.isDecay = true;
}
if( i == 20 ) reaction.heavyDecayA = atoi(str[0].c_str());
if( i == 21 ) reaction.heavyDecayZ = atoi(str[0].c_str());
if( i == 22 ) {
if( str[0].compare("false") == 0 ) reaction.isRedo = false;
if( str[0].compare("true" ) == 0 ) reaction.isRedo = true;
}
if( i >= 23) {
reaction.beamEx.push_back( atof(str[0].c_str()) );
}
}
reaction.recoilHeavyA = reaction.beamA + reaction.targetA - reaction.recoilLightA;
reaction.recoilHeavyZ = reaction.beamZ + reaction.targetZ - reaction.recoilLightZ;
return reaction;
}
void PrintReactionConfig(ReactionConfig reaction){
printf("=====================================================\n");
printf(" beam : A = %3d, Z = %2d \n", reaction.beamA, reaction.beamZ);
printf(" target : A = %3d, Z = %2d \n", reaction.targetA, reaction.targetZ);
printf(" light : A = %3d, Z = %2d \n", reaction.recoilLightA, reaction.recoilLightZ);
printf(" beam Energy : %.2f +- %.2f MeV/u, dE/E = %5.2f %%\n", reaction.beamEnergy, reaction.beamEnergySigma, reaction.beamEnergySigma/reaction.beamEnergy);
printf(" Angle : %.2f +- %.2f mrad\n", reaction.beamAngle, reaction.beamAngleSigma);
printf(" offset : (x,y) = (%.2f, %.2f) mmm \n", reaction.beamX, reaction.beamY);
printf("##### number of Simulation Events : %d \n", reaction.numEvents);
printf(" is target scattering : %s \n", reaction.isTargetScattering ? "Yes" : "No");
if(reaction.isTargetScattering){
printf(" target density : %.f g/cm3\n", reaction.targetDensity);
printf(" thickness : %.f cm\n", reaction.targetThickness);
printf(" beam stopping file : %s \n", reaction.beamStoppingPowerFile.c_str());
printf(" recoil light stopping file : %s \n", reaction.recoilLightStoppingPowerFile.c_str());
printf(" recoil heavy stopping file : %s \n", reaction.recoilHeavyStoppingPowerFile.c_str());
}
printf(" is simulate decay : %s \n", reaction.isDecay ? "Yes" : "No");
if( reaction.isDecay ){
printf(" heavy decay : A = %d, Z = %d \n", reaction.heavyDecayA, reaction.heavyDecayZ);
}
printf(" is Redo until hit array : %s \n", reaction.isRedo ? "Yes" : "No");
printf(" beam Ex : %.2f MeV \n", reaction.beamEx[0]);
for( int i = 1; i < (int) reaction.beamEx.size(); i++){
printf(" %.2f MeV \n", reaction.beamEx[i]);
}
printf("=====================================================\n");
}
DetGeo detGeo;
ReactionConfig reactionConfig1;
ReactionConfig reactionConfig2;
void LoadDetGeoAndReactionConfigFile(std::string detGeoFileName = "detectorGeo.txt",
std::string reactionConfigFileName1 = "reactionConfig1.txt",
std::string reactionConfigFileName2 = "reactionConfig2.txt"){
printf("=====================================================\n");
printf(" loading detector geometery : %s.", detGeoFileName.c_str());
TMacro * haha = new TMacro();
if( haha->ReadFile(detGeoFileName.c_str()) > 0 ) {
detGeo = AnalysisLib::LoadDetectorGeo(haha);
printf("... done.\n");
AnalysisLib::PrintDetGeo(detGeo);
}else{
printf("... fail\n");
}
delete haha;
printf("=====================================================\n");
printf(" loading reaction1 config : %s.", reactionConfigFileName1.c_str());
TMacro * kaka = new TMacro();
if( kaka->ReadFile(reactionConfigFileName1.c_str()) > 0 ) {
reactionConfig1 = AnalysisLib::LoadReactionConfig(kaka);
printf("..... done.\n");
AnalysisLib::PrintReactionConfig(reactionConfig1);
}else{
printf("..... fail\n");
}
delete kaka;
if( detGeo.use2ndArray){
printf("=====================================================\n");
printf(" loading reaction2 config : %s.", reactionConfigFileName2.c_str());
TMacro * jaja = new TMacro();
if( jaja->ReadFile(reactionConfigFileName2.c_str()) > 0 ) {
reactionConfig2 = AnalysisLib::LoadReactionConfig(kaka);
printf("..... done.\n");
AnalysisLib::PrintReactionConfig(reactionConfig2);
}else{
printf("..... fail\n");
}
delete jaja;
}
}
//************************************** Correction parameters;
std::vector<float> xnCorr; //correction of xn to match xf
std::vector<float> xScale; // correction of x to be (0,1)
std::vector<std::vector<float>> xfxneCorr; //correction of xn and xf to match e
std::vector<std::vector<float>> eCorr; // correction to e, ch -> MeV
std::vector<std::vector<float>> rdtCorr; // correction of rdt, ch -> MeV
//~========================================= xf = xn correction
void LoadXNCorr(bool verbose = false, const char * fileName = "correction_xf_xn.dat"){
printf(" loading xf-xn correction.");
xnCorr.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a;
while( file >> a ) xnCorr.push_back(a);
printf(".......... done.\n");
}else{
printf(".......... fail.\n");
}
file.close();
if( verbose ) for(int i = 0; i < (int) xnCorr.size(); i++) printf("%2d | %10.3f\n", i, xnCorr[i]);
}
//~========================================= X-Scale correction
void LoadXScaleCorr(bool verbose = false, const char * fileName = "correction_scaleX.dat"){
printf(" loading x-Scale correction.");
xScale.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a, b;
while( file >> a ) xScale.push_back(a);
printf("........ done.\n");
}else{
printf("........ fail.\n");
}
file.close();
if( verbose ) for(int i = 0; i < (int) xScale.size(); i++) printf("%2d | %10.3f\n", i, xnCorr[i]);
}
//~========================================= e = xf + xn correction
void LoadXFXN2ECorr(bool verbose = false, const char * fileName = "correction_xfxn_e.dat"){
printf(" loading xf/xn-e correction.");
xfxneCorr.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a, b;
while( file >> a >> b) xfxneCorr.push_back({a, b});
printf("........ done.\n");
}else{
printf("........ fail.\n");
}
file.close();
if( verbose ) for(int i = 0; i < (int) xfxneCorr.size(); i++) printf("%2d | %10.3f, %10.3f\n", i, xfxneCorr[i][0], xfxneCorr[i][1]);
}
//~========================================= e correction
void LoadECorr(bool verbose = false, const char * fileName = "correction_e.dat"){
printf(" loading e correction.");
eCorr.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a, b;
while( file >> a >> b) eCorr.push_back( {a, b} ); // 1/a1, a0 , e' = e * a1 + a0
printf(".............. done.\n");
}else{
printf(".............. fail.\n");
}
file.close();
if( verbose ) for(int i = 0; i < (int) eCorr.size(); i++) printf("%2d | %10.3f, %10.3f\n", i, eCorr[i][0], eCorr[i][1]);
}
//~========================================= rdt correction
void LoadRDTCorr(bool verbose = false, const char * fileName = "correction_rdt.dat"){
printf(" loading rdt correction.");
rdtCorr.clear();
std::ifstream file;
file.open(fileName);
if( file.is_open() ){
float a, b;
while( file >> a >> b) rdtCorr.push_back({a, b});
printf("............ done.\n");
}else{
printf("............ fail.\n");
}
file.close();
if( verbose ) for(int i = 0; i < (int) rdtCorr.size(); i++) printf("%2d | %10.3f, %10.3f\n", i, rdtCorr[i][0], rdtCorr[i][1]);
}
struct ReactionParas{
double Et; // total energy in CM frame
double beta; // Lorentz beta from Lab to CM
double gamma; // Lorentz gamma from Lab to CM
double alpha; // E-Z slope / beta
double G; //The G-coefficient....
double massB; // heavy mass
double q; // charge of light particle
double mass; //light mass
bool hasReactionPara;
double detPrepDist;
};
ReactionParas reactParas1;
ReactionParas reactParas2;
//~========================================= reaction parameters
void LoadReactionParas(int arrayID, bool verbose = false){
//check is the transfer.root is using the latest reactionConfig.txt
//sicne reaction.dat is generated as a by-product of transfer.root
//TFile * transfer = new TFile("transfer.root");
//TString aaa1 = "";
//TString aaa2 = "";
//if( transfer->IsOpen() ){
// TMacro * reactionConfig = (TMacro *) transfer->FindObjectAny("reactionConfig");
// TMacro presentReactionConfig ("reactionConfig.txt");
// aaa1 = ((TMD5*) reactionConfig->Checksum())->AsString();
// aaa2 = ((TMD5*) presentReactionConfig.Checksum())->AsString();
//}
//printf("%s\n", aaa1.Data());
//printf("%s\n", aaa2.Data());
//if( aaa1 != aaa2 ) {
// printf("########################## recalculate transfer.root \n");
// system("../Cleopatra/Transfer");
// printf("########################## transfer.root updated\n");
//}
ReactionParas * reactParas = nullptr;
std::string fileName;
if( arrayID == 1){
reactParas = &AnalysisLib::reactParas1;
fileName = "reaction.dat";
}else if( arrayID == 2){
reactParas = &AnalysisLib::reactParas2;
fileName = "reaction2.dat";
}else{
printf("arrayID must be either 1 or 2. Abort.\n");
return;
}
reactParas->detPrepDist = AnalysisLib::detGeo.array1.detPerpDist;
printf(" loading reaction parameters");
std::ifstream file;
file.open(fileName.c_str());
reactParas->hasReactionPara = false;
if( file.is_open() ){
std::string x;
int i = 0;
while( file >> x ){
if( x.substr(0,2) == "//" ) continue;
if( i == 0 ) reactParas->mass = atof(x.c_str());
if( i == 1 ) reactParas->q = atof(x.c_str());
if( i == 2 ) reactParas->beta = atof(x.c_str());
if( i == 3 ) reactParas->Et = atof(x.c_str());
if( i == 4 ) reactParas->massB = atof(x.c_str());
i = i + 1;
}
printf("........ done.\n");
reactParas->hasReactionPara = true;
reactParas->alpha = 299.792458 * abs(detGeo.Bfield) * reactParas->q / TMath::TwoPi()/1000.; //MeV/mm
reactParas->gamma = 1./TMath::Sqrt(1-reactParas->beta * reactParas->beta);
reactParas->G = reactParas->alpha * reactParas->gamma * reactParas->beta * reactParas->detPrepDist ;
if( verbose ){
printf("\tmass-b : %f MeV/c2 \n", reactParas->mass);
printf("\tcharge-b : %f \n", reactParas->q);
printf("\tE-total : %f MeV \n", reactParas->Et);
printf("\tmass-B : %f MeV/c2 \n", reactParas->massB);
printf("\tbeta : %f \n", reactParas->beta);
printf("\tB-field : %f T \n", detGeo.Bfield);
printf("\tslope : %f MeV/mm \n", reactParas->alpha * reactParas->beta);
printf("\tdet radius: %f mm \n", reactParas->detPrepDist);
printf("\tG-coeff : %f MeV \n", reactParas->G);
printf("=====================================================\n");
}
}else{
printf("........ fail.\n");
}
file.close();
}
std::vector<double> CalExTheta(double e, double z){
ReactionParas * reactParas = nullptr;
if( detGeo.array1.zMin <= z && z <= detGeo.array1.zMax ){
reactParas = &reactParas1;
if( !reactParas->hasReactionPara) return {TMath::QuietNaN(), TMath::QuietNaN()};
}
if( detGeo.array2.zMin <= z && z <= detGeo.array2.zMax ){
reactParas = &reactParas2;
if( !reactParas->hasReactionPara) return {TMath::QuietNaN(), TMath::QuietNaN()};
}
double Ex = TMath::QuietNaN();
double thetaCM = TMath::QuietNaN();
double y = e + reactParas->mass; // to give the KE + mass of proton;
double Z = reactParas->alpha * reactParas->gamma * reactParas->beta * z;
double H = TMath::Sqrt(TMath::Power(reactParas->gamma * reactParas->beta,2) * (y*y - reactParas->mass * reactParas->mass) ) ;
if( TMath::Abs(Z) < H ) {
///using Newton's method to solve 0 == H * sin(phi) - G * tan(phi) - Z = f(phi)
double tolerrence = 0.001;
double phi = 0; ///initial phi = 0 -> ensure the solution has f'(phi) > 0
double nPhi = 0; /// new phi
int iter = 0;
do{
phi = nPhi;
nPhi = phi - (H * TMath::Sin(phi) - reactParas->G * TMath::Tan(phi) - Z) / (H * TMath::Cos(phi) - reactParas->G /TMath::Power( TMath::Cos(phi), 2));
iter ++;
if( iter > 10 || TMath::Abs(nPhi) > TMath::PiOver2()) break;
}while( TMath::Abs(phi - nPhi ) > tolerrence);
phi = nPhi;
/// check f'(phi) > 0
double Df = H * TMath::Cos(phi) - reactParas->G / TMath::Power( TMath::Cos(phi),2);
if( Df > 0 && TMath::Abs(phi) < TMath::PiOver2() ){
double K = H * TMath::Sin(phi);
double x = TMath::ACos( reactParas->mass / ( y * reactParas->gamma - K));
double momt = reactParas->mass * TMath::Tan(x); /// momentum of particel b or B in CM frame
double EB = TMath::Sqrt(reactParas->mass * reactParas->mass + reactParas->Et * reactParas->Et - 2 * reactParas->Et * TMath::Sqrt(momt*momt + reactParas->mass * reactParas->mass));
Ex = EB - reactParas->massB;
double hahaha1 = reactParas->gamma * TMath::Sqrt(reactParas->mass * reactParas->mass + momt * momt) - y;
double hahaha2 = reactParas->gamma * reactParas->beta * momt;
thetaCM = TMath::ACos(hahaha1/hahaha2) * TMath::RadToDeg();
}
}
return {Ex, thetaCM};
}
//************************************** TCutG
TObjArray * LoadListOfTCut(TString fileName, TString cutName = "cutList"){
if( fileName == "" ) return nullptr;
TObjArray * cutList = nullptr;
TFile * fCut = new TFile(fileName);
bool isCutFileOpen = fCut->IsOpen();
if(!isCutFileOpen) {
printf( "Failed to open rdt-cutfile 1 : %s\n" , fileName.Data());
}else{
cutList = (TObjArray *) fCut->FindObjectAny(cutName);
if( cutList ){
int numCut = cutList->GetEntries();
printf("=========== found %d cutG in %s \n", numCut, fCut->GetName());
for(int i = 0; i < numCut ; i++){
printf("cut name : %s , VarX: %s, VarY: %s, numPoints: %d \n",
cutList->At(i)->GetName(),
((TCutG*)cutList->At(i))->GetVarX(),
((TCutG*)cutList->At(i))->GetVarY(),
((TCutG*)cutList->At(i))->GetN()
);
}
}
}
return cutList;
}
TCutG * LoadSingleTCut( TString fileName, TString cutName = "cutEZ"){
if( fileName == "" ) return nullptr;
TCutG * cut = nullptr;
TFile * fCut = new TFile(fileName);
bool isCutFileOpen = fCut->IsOpen();
if( !isCutFileOpen) {
printf( "Failed to open E-Z cutfile : %s\n" , fileName.Data());
}else{
cut = (TCutG *) fCut->FindObjectAny(cutName);
if( cut != NULL ) {
printf("Found EZ cut| name : %s, VarX: %s, VarY: %s, numPoints: %d \n",
cut->GetName(),
cut->GetVarX(),
cut->GetVarY(),
cut->GetN()
);
}
}
return cut;
}
//************************************** Others
std::vector<std::vector<double>> combination(std::vector<double> arr, int r){
std::vector<std::vector<double>> output;
int n = arr.size();
std::vector<int> v(n);
std::fill(v.begin(), v.begin()+r, 1);
do {
//for( int i = 0; i < n; i++) { printf("%d ", v[i]); }; printf("\n");
std::vector<double> temp;
for (int i = 0; i < n; ++i) {
if (v[i]) {
//printf("%.1f, ", arr[i]);
temp.push_back(arr[i]);
}
}
//printf("\n");
output.push_back(temp);
} while (std::prev_permutation(v.begin(), v.end()));
return output;
}
double* sumMeanVar(std::vector<double> data){
int n = data.size();
double sum = 0;
for( int k = 0; k < n; k++) sum += data[k];
double mean = sum/n;
double var = 0;
for( int k = 0; k < n; k++) var += pow(data[k] - mean,2);
static double output[3];
output[0] = sum;
output[1] = mean;
output[2] = var;
return output;
}
double* fitSlopeIntercept(std::vector<double> dataX, std::vector<double> dataY){
double * smvY = sumMeanVar(dataY);
double sumY = smvY[0];
double meanY = smvY[1];
double * smvX = sumMeanVar(dataX);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
int n = dataX.size();
double sumXY = 0;
for( int j = 0; j < n; j++) sumXY += dataX[j] * dataY[j];
double slope = ( sumXY - sumX * sumY/n ) / varX;
double intercept = meanY - slope * meanX;
static double output[2];
output[0] = slope;
output[1] = intercept;
return output;
}
std::vector<std::vector<double>> FindMatchingPair(std::vector<double> enX, std::vector<double> enY){
//output[0] = fitEnergy;
//output[1] = refEnergy;
int nX = enX.size();
int nY = enY.size();
std::vector<double> fitEnergy;
std::vector<double> refEnergy;
if( nX > nY ){
std::vector<std::vector<double>> output = combination(enX, nY);
double * smvY = sumMeanVar(enY);
double sumY = smvY[0];
double meanY = smvY[1];
double varY = smvY[2];
double optRSquared = 0;
double absRSqMinusOne = 1;
int maxID = 0;
for( int k = 0; k < (int) output.size(); k++){
double * smvX = sumMeanVar(output[k]);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
double sumXY = 0;
for( int j = 0; j < nY; j++) sumXY += output[k][j] * enY[j];
double rSq = abs(sumXY - sumX*sumY/nY)/sqrt(varX*varY);
//for( int j = 0; j < nY ; j++){ printf("%.1f, ", output[k][j]); }; printf("| %.10f\n", rSq);
if( abs(rSq-1) < absRSqMinusOne ) {
absRSqMinusOne = abs(rSq-1);
optRSquared = rSq;
maxID = k;
}
}
fitEnergy = output[maxID];
refEnergy = enY;
printf(" R^2 : %.20f\n", optRSquared);
//calculation fitting coefficient
//double * si = fitSlopeIntercept(fitEnergy, refEnergy);
//printf( " y = %.4f x + %.4f\n", si[0], si[1]);
}else if( nX < nY ){
std::vector<std::vector<double>> output = combination(enY, nX);
double * smvX = sumMeanVar(enX);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
double optRSquared = 0;
double absRSqMinusOne = 1;
int maxID = 0;
for( int k = 0; k < (int) output.size(); k++){
double * smvY = sumMeanVar(output[k]);
double sumY = smvY[0];
double meanY = smvY[1];
double varY = smvY[2];
double sumXY = 0;
for( int j = 0; j < nX; j++) sumXY += output[k][j] * enX[j];
double rSq = abs(sumXY - sumX*sumY/nX)/sqrt(varX*varY);
//for( int j = 0; j < nX ; j++){ printf("%.1f, ", output[k][j]); }; printf("| %.10f\n", rSq);
if( abs(rSq-1) < absRSqMinusOne ) {
absRSqMinusOne = abs(rSq-1);
optRSquared = rSq;
maxID = k;
}
}
fitEnergy = enX;
refEnergy = output[maxID];
printf(" R^2 : %.20f\n", optRSquared);
}else{
fitEnergy = enX;
refEnergy = enY;
//if nX == nY, ther could be cases that only partial enX and enY are matched.
}
printf("fitEnergy = ");for( int k = 0; k < (int) fitEnergy.size() ; k++){ printf("%7.2f, ", fitEnergy[k]); }; printf("\n");
printf("refEnergy = ");for( int k = 0; k < (int) refEnergy.size() ; k++){ printf("%7.2f, ", refEnergy[k]); }; printf("\n");
std::vector<std::vector<double>> haha;
haha.push_back(fitEnergy);
haha.push_back(refEnergy);
return haha;
}
}
#endif

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Armory/AutoFit.C → armory/AutoFit.C
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351
armory/EventBuilder.cpp Normal file
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@ -0,0 +1,351 @@
#include "SolReader.h"
#include <cstdio>
#include <cstdlib>
#include "TFile.h"
#include "TTree.h"
#include "TMath.h"
#include "TString.h"
#include "TMacro.h"
//#include "TClonesArray.h" // plan to save trace as TVector with TClonesArray
//#include "TVector.h"
#define MAX_MULTI 64
#define MAX_TRACE_LEN 2500
#define tick2ns 8 // 1 tick = 8 ns
SolReader ** reader;
Hit ** hit;
std::vector<std::vector<int>> idList;
unsigned long totFileSize = 0;
unsigned long processedFileSize = 0;
std::vector<int> activeFileID;
std::vector<int> groupIndex;
std::vector<std::vector<int>> group; // group[i][j], i = group ID, j = group member)
void findEarliestTime(int &fileID, int &groupID){
unsigned long firstTime = 0;
for( int i = 0; i < (int) activeFileID.size(); i++){
int id = activeFileID[i];
if( i == 0 ) {
firstTime = hit[id]->timestamp;
fileID = id;
groupID = i;
//printf("%d | %d %lu %d | %d \n", id, reader[id]->GetBlockID(), hit[id]->timestamp, hit[id]->channel, (int) activeFileID.size());
continue;
}
if( hit[id]->timestamp <= firstTime) {
firstTime = hit[id]->timestamp;
fileID = id;
groupID = i;
//printf("%d | %d %lu %d | %d \n", id, reader[id]->GetBlockID(), hit[id]->timestamp, hit[id]->channel, (int) activeFileID.size());
}
}
}
unsigned long long evID = 0;
unsigned int multi = 0;
unsigned short bd[MAX_MULTI] = {0};
unsigned short sn[MAX_MULTI] = {0};
unsigned short ch[MAX_MULTI] = {0};
unsigned short e[MAX_MULTI] = {0};
unsigned short e2[MAX_MULTI] = {0}; //for PSD energy short
unsigned long long e_t[MAX_MULTI] = {0};
unsigned short e_f[MAX_MULTI] = {0};
unsigned short lowFlag[MAX_MULTI] = {0};
unsigned short highFlag[MAX_MULTI] = {0};
int traceLen[MAX_MULTI] = {0};
int trace[MAX_MULTI][MAX_TRACE_LEN] = {0};
void fillData(int &fileID, const bool &saveTrace){
bd[multi] = idList[fileID][1];
sn[multi] = idList[fileID][3];
ch[multi] = hit[fileID]->channel;
e[multi] = hit[fileID]->energy;
e2[multi] = hit[fileID]->energy_short;
e_t[multi] = hit[fileID]->timestamp;
e_f[multi] = hit[fileID]->fine_timestamp;
lowFlag[multi] = hit[fileID]->flags_low_priority;
highFlag[multi] = hit[fileID]->flags_high_priority;
if( saveTrace ){
traceLen[multi] = hit[fileID]->traceLenght;
for( int i = 0; i < TMath::Min(traceLen[multi], MAX_TRACE_LEN); i++){
trace[multi][i] = hit[fileID]->analog_probes[0][i];
}
}
multi++;
reader[fileID]->ReadNextBlock();
}
void printEvent(){
printf("==================== evID : %llu\n", evID);
for( int i = 0; i < multi; i++){
printf(" %2d | %d %d | %llu %d \n", i, bd[i], ch[i], e_t[i], e[i] );
}
printf("==========================================\n");
}
//^##################################################################################
int main(int argc, char ** argv){
printf("=======================================================\n");
printf("=== SOLARIS Event Builder sol --> root ===\n");
printf("=======================================================\n");
if( argc <= 3){
printf("%s [outfile] [timeWindow] [saveTrace] [sol-1] [sol-2] ... \n", argv[0]);
printf(" outfile : output root file name\n");
printf(" timeWindow : number of tick, 1 tick = %d ns.\n", tick2ns);
printf(" saveTrace : 1 = save trace, 0 = no trace\n");
printf(" sol-X : the sol file(s)\n");
return -1;
}
// for( int i = 0; i < argc; i++){
// printf("%d | %s\n", i, argv[i]);
// }
TString outFileName = argv[1];
int timeWindow = abs(atoi(argv[2]));
const bool saveTrace = atoi(argv[3]);
const int nFile = argc - 4;
TString inFileName[nFile];
for( int i = 0 ; i < nFile ; i++){
inFileName[i] = argv[i+4];
}
//*======================================== setup reader
reader = new SolReader*[nFile];
hit = new Hit *[nFile];
for( int i = 0 ; i < nFile ; i++){
reader[i] = new SolReader(inFileName[i].Data());
hit[i] = reader[i]->hit; //TODO check is file open propertly
reader[i]->ReadNextBlock(); // read the first block
}
//*======================================== group files
idList.clear();
for( int i = 0; i < nFile; i++){
TString fn = inFileName[i];
int pos = fn.Last('/'); // path
fn.Remove(0, pos+1);
pos = fn.First('_'); // expName;
fn.Remove(0, pos+1);
pos = fn.First('_'); // runNum;
fn.Remove(0, pos+1);
pos = fn.First('_'); // digiID
TString f1 = fn;
int digiID = f1.Remove(pos).Atoi();
fn.Remove(0, pos+1);
pos = fn.Last('_'); // digi serial num
f1 = fn;
int digisn = f1.Remove(pos).Atoi();
fn.Remove(0, pos+1);
pos = fn.First('.'); // get the file id;
int indexID = fn.Remove(pos).Atoi();
int fileID = i;
std::vector<int> haha = {fileID, digiID, indexID, digisn};
idList.push_back(haha);
}
// sort by digiID
std::sort(idList.begin(), idList.end(), [](const std::vector<int>& a, const std::vector<int>& b){
if (a[1] == b[1]) {
return a[2] < b[2];
}
return a[1] < b[1];
});
group.clear(); // group[i][j], i is the group Index = digiID
int last_id = 0;
std::vector<int> kaka;
for( int i = 0; i < (int) idList.size() ; i++){
if( i == 0 ) {
kaka.clear();
last_id = idList[i][1];
kaka.push_back(idList[i][0]);
continue;
}
if( idList[i][1] != last_id ) {
last_id = idList[i][1];
group.push_back(kaka);
kaka.clear();
kaka.push_back(idList[i][0]);
}else{
kaka.push_back(idList[i][0]);
}
}
group.push_back(kaka);
printf(" out file : \033[1;33m%s\033[m\n", outFileName.Data());
printf(" Event building time window : %d tics = %d nsec \n", timeWindow, timeWindow*tick2ns);
printf(" Save Trace ? %s \n", saveTrace ? "Yes" : "No");
printf(" Number of input file : %d \n", nFile);
for( int i = 0; i < nFile; i++){
printf(" %2d| %5.1f MB| %s \n", i, reader[i]->GetFileSize()/1024./1024., inFileName[i].Data());
totFileSize += reader[i]->GetFileSize();
}
printf("------------------------------------\n");
for( int i = 0; i < (int) group.size(); i++){
printf("Group %d :", i);
for( int j = 0; j < (int) group[i].size(); j ++){
printf("%d, ", group[i][j]);
}
printf("\n");
}
printf("------------------------------------\n");
//*======================================== setup tree
TFile * outRootFile = new TFile(outFileName, "recreate");
outRootFile->cd();
TTree * tree = new TTree("tree", outFileName);
tree->Branch("evID", &evID, "event_ID/l");
tree->Branch("multi", &multi, "multi/i");
tree->Branch("bd", bd, "board[multi]/s");
tree->Branch("sn", sn, "sn[multi]/s");
tree->Branch("ch", ch, "channel[multi]/s");
tree->Branch("e", e, "energy[multi]/s");
tree->Branch("e2", e2, "energy_short[multi]/s");
tree->Branch("e_t", e_t, "timestamp[multi]/l");
tree->Branch("e_f", e_t, "fine_timestamp[multi]/s");
tree->Branch("lowFlag", lowFlag, "lowFlag[multi]/s");
tree->Branch("highFlag", highFlag, "highFlag[multi]/s");
if( saveTrace){
tree->Branch("tl", traceLen, "traceLen[multi]/I");
tree->Branch("trace", trace, Form("trace[multi][%d]/I", MAX_TRACE_LEN));
}
//*=========================================== build event
//@---- using file from group[i][0] first
//--- find earlist time among the files
activeFileID.clear();
groupIndex.clear(); //the index of each group
for(int i = 0; i < (int) group.size(); i++) {
groupIndex.push_back(0);
activeFileID.push_back(group[i][0]);
}
int fileID = 0;
int groupID = 0;
findEarliestTime(fileID, groupID);
fillData(fileID, saveTrace);
unsigned long firstTimeStamp = hit[fileID]->timestamp;
unsigned long lastTimeStamp = 0;
int last_precentage = 0;
while((activeFileID.size() > 0)){
findEarliestTime(fileID, groupID);
if( reader[fileID]->IsEndOfFile() ){
groupIndex[groupID] ++;
if( groupIndex[groupID] < (int) group[groupID].size() ){
activeFileID[groupID] = group[groupID][groupIndex[groupID]];
fileID = activeFileID[groupID];
}else{
activeFileID.erase(activeFileID.begin() + groupID);
}
}
if( hit[fileID]->timestamp - e_t[0] < timeWindow ){
fillData(fileID, saveTrace);
}else{
outRootFile->cd();
tree->Fill();
evID ++;
multi = 0;
fillData(fileID, saveTrace);
}
///========= calculate progress
processedFileSize = 0;
for( int p = 0; p < (int) group.size(); p ++){
for( int q = 0; q <= groupIndex[p]; q++){
if( groupIndex[p] < (int) group[p].size() ){
int id = group[p][q];
processedFileSize += reader[id]->GetFilePos();
}
}
}
double percentage = processedFileSize * 100/ totFileSize;
if( percentage >= last_precentage ) {
printf("Processed : %llu, %.0f%% | %lu/%lu | ", evID, percentage, processedFileSize, totFileSize);
for( int i = 0; i < (int) activeFileID.size(); i++) printf("%d, ", activeFileID[i]);
printf(" \n\033[A\r");
last_precentage = percentage + 1.0;
}
}; ///====== end of event building loop
processedFileSize = 0;
for( int p = 0; p < (int) group.size(); p ++){
for( int q = 0; q < (int) group[p].size(); q++){
int id = group[p][q];
processedFileSize += reader[id]->GetFilePos();
}
}
double percentage = processedFileSize * 100/ totFileSize;
printf("Processed : %llu, %.0f%% | %lu/%lu \n", evID, percentage, processedFileSize, totFileSize);
lastTimeStamp = hit[fileID]->timestamp;
//*=========================================== save file
outRootFile->cd();
tree->Fill();
evID ++;
tree->Write();
//*=========================================== Save timestamp as TMacro
TMacro timeStamp;
TString str;
str.Form("%lu", firstTimeStamp); timeStamp.AddLine( str.Data() );
str.Form("%lu", lastTimeStamp); timeStamp.AddLine( str.Data() );
timeStamp.Write("timeStamp");
unsigned int numBlock = 0;
for( int i = 0; i < nFile; i++){
//printf("%d | %8ld | %10u/%10u\n", i, reader[i]->GetBlockID() + 1, reader[i]->GetFilePos(), reader[i]->GetFileSize());
numBlock += reader[i]->GetBlockID() + 1;
}
printf("===================================== done. \n");
printf("Number of Block Scanned : %u\n", numBlock);
printf(" Number of Event Built : %lld\n", evID);
printf(" Output Root File Size : %.2f MB\n", outRootFile->GetSize()/1024./1024.);
printf(" first timestamp : %lu \n", firstTimeStamp);
printf(" last timestamp : %lu \n", lastTimeStamp);
unsigned long duration = lastTimeStamp - firstTimeStamp;
printf(" total duration : %lu = %.2f sec \n", duration, duration * tick2ns * 1.0 / 1e9 );
printf("===================================== end of summary. \n");
//^############## delete new
for( int i = 0; i < nFile; i++) delete reader[i];
delete [] reader;
outRootFile->Close();
return 0;
}

60
Armory/GeneralSort.C → armory/GeneralSort.C
View File

@ -22,38 +22,39 @@ Bool_t GeneralSort::Process(Long64_t entry){
///initialization ///initialization
for( int i = 0; i < mapping::nDetType; i++){ for( int i = 0; i < mapping::nDetType; i++){
if( mapping::detNum[i] == 0 ) continue;
for( int j = 0; j < mapping::detNum[i]; j++){ for( int j = 0; j < mapping::detNum[i]; j++){
eE[i][j] = TMath::QuietNaN(); eE[i][j] = TMath::QuietNaN();
eT[i][j] = 0; eT[i][j] = 0;
if( isTraceExist && traceMethod > 1){ if( isTraceExist && traceMethod > 0){
teE[i][j] = TMath::QuietNaN(); teE[i][j] = TMath::QuietNaN();
teT[i][j] = TMath::QuietNaN(); teT[i][j] = TMath::QuietNaN();
teR[i][j] = TMath::QuietNaN(); teR[i][j] = TMath::QuietNaN();
} }
} }
} }
b_evID->GetEntry(entry); multi = 0;
b_event_ID->GetEntry(entry);
b_multi->GetEntry(entry); b_multi->GetEntry(entry);
b_bd->GetEntry(entry); b_bd->GetEntry(entry);
b_ch->GetEntry(entry); b_ch->GetEntry(entry);
b_e->GetEntry(entry); b_e->GetEntry(entry);
b_e_t->GetEntry(entry); b_e_t->GetEntry(entry);
for( unsigned int i = 0 ; i < multi; i++){ for( int i = 0 ; i < multi; i++){
int detID = mapping::map[bd[i]][ch[i]]; int detID = mapping::map[bd[i]][ch[i]];
if( detID < 0 ) continue;
int detType = mapping::FindDetTypeIndex(detID); int detType = mapping::FindDetTypeIndex(detID);
int reducedDetID = detID - (detID/100) * 100; int low = (i == 0 ? 0 : mapping::detMaxID[detType-1]);
int reducedDetID = detID - low;
eE[detType][reducedDetID] = e[i] * mapping::detParity[detType]; eE[detType][reducedDetID] = e[i] * mapping::detParity[detType];
eT[detType][reducedDetID] = e_t[i]; eT[detType][reducedDetID] = e_t[i];
} }
//@===================================== Trace //@===================================== Trace
if( isTraceExist && traceMethod > 0 ){ if( isTraceExist && traceMethod >= 0 ){
b_tl->GetEntry(entry); b_tl->GetEntry(entry);
b_trace->GetEntry(entry); b_trace->GetEntry(entry);
@ -62,9 +63,9 @@ Bool_t GeneralSort::Process(Long64_t entry){
arr->Clear("C"); arr->Clear("C");
for( unsigned int i = 0; i < multi; i++){ for( int i = 0; i < multi; i++){
int detID = mapping::map[bd[i]][ch[i]]; int detID = mapping::map[bd[i]][ch[i]];
if( detID < 0 ) continue;
int traceLength = tl[i]; int traceLength = tl[i];
gTrace = (TGraph*) arr->ConstructedAt(countTrace, "C"); gTrace = (TGraph*) arr->ConstructedAt(countTrace, "C");
@ -79,14 +80,15 @@ Bool_t GeneralSort::Process(Long64_t entry){
} }
//***=================== fit //***=================== fit
if( traceMethod == 2){ if( traceMethod == 1){
int detType = mapping::FindDetTypeIndex(detID); int detType = mapping::FindDetTypeIndex(detID);
if( mapping::detNum[detType] == 0 ) continue;
//TODO use a blackList //TODO use a blackList
//if( mapping::detTypeName[detType] != "rdt") continue; //if( mapping::detTypeName[detType] != "rdt") continue;
//TODO try custom build fiting algorithm. May be faster?
gFit = new TF1("gFit", fitFunc, 0, traceLength, numPara);
gFit->SetLineColor(6);
gFit->SetRange(0, traceLength); gFit->SetRange(0, traceLength);
gFit->SetParameter(0, e[i]); gFit->SetParameter(0, e[i]);
@ -101,17 +103,19 @@ Bool_t GeneralSort::Process(Long64_t entry){
gTrace->Fit("gFit", "QR", "", 0, traceLength); gTrace->Fit("gFit", "QR", "", 0, traceLength);
int reducedDetID = detID - (detID/100) * 100; int low = (i == 0 ? 0 : mapping::detMaxID[detType-1]);
int reducedDetID = detID - low;
teE[detType][reducedDetID] = gFit->GetParameter(0); teE[detType][reducedDetID] = gFit->GetParameter(0);
teT[detType][reducedDetID] = gFit->GetParameter(1); teT[detType][reducedDetID] = gFit->GetParameter(1);
teR[detType][reducedDetID] = gFit->GetParameter(2); teR[detType][reducedDetID] = gFit->GetParameter(2);
// delete gFit; delete gFit;
// gFit = nullptr; gFit = nullptr;
} }
//***=================== Trapezoid filter //***=================== Trapezoid filter
if( traceMethod == 3){ if( traceMethod == 2){
//TODO //TODO
} }
@ -143,12 +147,12 @@ void GeneralSort::Terminate(){
printf("=============================== %s\n", __func__); printf("=============================== %s\n", __func__);
// CleanUpMemory(); //? Should Clean? DecodeOption();
if( !isParallel){ if( !isParallel){
stpWatch.Start(kFALSE); stpWatch.Start(kFALSE);
saveFile->cd(); saveFile->cd();
// newSaveTree->Print("toponly"); newSaveTree->Print("toponly");
newSaveTree->Write(); newSaveTree->Write();
saveFile->Close(); saveFile->Close();
} }
@ -157,8 +161,10 @@ void GeneralSort::Terminate(){
saveFile = TFile::Open(saveFileName); saveFile = TFile::Open(saveFileName);
if( saveFile->IsOpen() ){ if( saveFile->IsOpen() ){
TTree * tree = (TTree*) saveFile->FindObjectAny("gen_tree"); TTree * tree = (TTree*) saveFile->FindObjectAny("gen_tree");
int validCount = tree->GetEntries(); int validCount = tree->GetEntries();
saveFile->Close(); saveFile->Close();
printf("=========================================================================\n"); printf("=========================================================================\n");
PrintTraceMethod(); PrintTraceMethod();
printf("----- saved as \033[1;33m%s\033[0m. valid event: %d\n", saveFileName.Data() , validCount); printf("----- saved as \033[1;33m%s\033[0m. valid event: %d\n", saveFileName.Data() , validCount);
@ -169,9 +175,9 @@ void GeneralSort::Terminate(){
//^############################################################## //^##############################################################
void GeneralSort::Begin(TTree * tree){ void GeneralSort::Begin(TTree * tree){
printf( "================================================================================\n"); printf( "=================================================================\n");
printf( "============================ SOLARIS GeneralSort.C =========================\n"); printf( "===================== SOLARIS GeneralSort.C =================\n");
printf( "================================================================================\n"); printf( "=================================================================\n");
mapping::PrintMapping(); mapping::PrintMapping();
@ -184,16 +190,16 @@ void GeneralSort::Begin(TTree * tree){
} }
void GeneralSort::SlaveBegin(TTree * /*tree*/){ void GeneralSort::SlaveBegin(TTree * /*tree*/){
} }
void GeneralSort::SlaveTerminate(){ void GeneralSort::SlaveTerminate(){
printf("============= %s\n", __func__);
if( isParallel){ if( isParallel){
printf("%s::SaveTree\n", __func__); printf("%s::SaveTree\n", __func__);
saveFile->cd(); saveFile->cd();
newSaveTree->Write(); newSaveTree->Write();
fOutput->Add(proofFile); fOutput->Add(proofFile);
saveFile->Close(); saveFile->Close();
printf("---- closing this worker\n");
} }
} }

145
Armory/GeneralSort.h → armory/GeneralSort.h
View File

@ -50,6 +50,49 @@ double fitFunc(double * x, double * par){
return par[3] + par[0] * (1 - TMath::Exp(- (x[0] - par[1]) / par[2]) ) * TMath::Exp(- (x[0] - par[1]) / par[4]); return par[3] + par[0] * (1 - TMath::Exp(- (x[0] - par[1]) / par[2]) ) * TMath::Exp(- (x[0] - par[1]) / par[4]);
} }
//^######################################### TRAPEZOID
TGraph * TrapezoidFilter(TGraph * trace){
///Trapezoid filter https://doi.org/10.1016/0168-9002(94)91652-7
//TODO how to not hard code?
int baseLineEnd = 80;
int riseTime = 10; //ch
int flatTop = 20;
float decayTime = 2000;
TGraph * trapezoid = new TGraph();
trapezoid->Clear();
///find baseline;
double baseline = 0;
for( int i = 0; i < baseLineEnd; i++){
baseline += trace->Eval(i);
}
baseline = baseline*1./baseLineEnd;
int length = trace->GetN();
double pn = 0.;
double sn = 0.;
for( int i = 0; i < length ; i++){
double dlk = trace->Eval(i) - baseline;
if( i - riseTime >= 0 ) dlk -= trace->Eval(i - riseTime) - baseline;
if( i - flatTop - riseTime >= 0 ) dlk -= trace->Eval(i - flatTop - riseTime) - baseline;
if( i - flatTop - 2*riseTime >= 0) dlk += trace->Eval(i - flatTop - 2*riseTime) - baseline;
if( i == 0 ){
pn = dlk;
sn = pn + dlk*decayTime;
}else{
pn = pn + dlk;
sn = sn + pn + dlk*decayTime;
}
trapezoid->SetPoint(i, i, sn / decayTime / riseTime);
}
return trapezoid;
}
TStopwatch stpWatch; TStopwatch stpWatch;
//^######################################### Class definition //^######################################### Class definition
@ -62,10 +105,10 @@ public :
// Declaration of leaf types // Declaration of leaf types
ULong64_t evID; ULong64_t evID;
UInt_t multi; Int_t multi;
UShort_t bd[100]; //[multi] Int_t bd[100]; //[multi]
UShort_t ch[100]; //[multi] Int_t ch[100]; //[multi]
UShort_t e[100]; //[multi] Int_t e[100]; //[multi]
ULong64_t e_t[100]; //[multi] ULong64_t e_t[100]; //[multi]
UShort_t lowFlag[100]; //[multi] UShort_t lowFlag[100]; //[multi]
UShort_t highFlag[100]; //[multi] UShort_t highFlag[100]; //[multi]
@ -73,7 +116,7 @@ public :
Int_t trace[100][2500]; //[multi] Int_t trace[100][2500]; //[multi]
// List of branches // List of branches
TBranch *b_evID; //! TBranch *b_event_ID; //!
TBranch *b_multi; //! TBranch *b_multi; //!
TBranch *b_bd; //! TBranch *b_bd; //!
TBranch *b_ch; //! TBranch *b_ch; //!
@ -88,7 +131,7 @@ public :
printf("constructor :: %s\n", __func__); printf("constructor :: %s\n", __func__);
isTraceExist = false; isTraceExist = false;
traceMethod = 0; // 0 = ignore trace, 1 = no trace fit, 2 = fit, 3 = trapezoid traceMethod = 0; // -1 = ignore trace, 0 = no trace fit, 1 = fit, 2 = trapezoid
isParallel = false; isParallel = false;
@ -129,8 +172,6 @@ public :
bool isTraceExist; bool isTraceExist;
int traceMethod; int traceMethod;
void CleanUpMemory();
void SetTraceMethod(int methodID) {traceMethod = methodID;} void SetTraceMethod(int methodID) {traceMethod = methodID;}
void PrintTraceMethod(); void PrintTraceMethod();
@ -182,13 +223,12 @@ void GeneralSort::SetUpTree(){
newSaveTree->SetDirectory(saveFile); newSaveTree->SetDirectory(saveFile);
newSaveTree->AutoSave(); newSaveTree->AutoSave();
newSaveTree->Branch( "evID", &evID, "evID/l"); // simply copy newSaveTree->Branch( "evID", &evID, "EventID/l"); // simply copy
eE = new Float_t * [mapping::nDetType]; eE = new Float_t * [mapping::nDetType];
eT = new ULong64_t * [mapping::nDetType]; eT = new ULong64_t * [mapping::nDetType];
for( int i = 0 ; i < mapping::nDetType; i++){ for( int i = 0 ; i < mapping::nDetType; i++){
if( mapping::detNum[i] == 0 ) continue;
eE[i] = new Float_t[mapping::detNum[i]]; eE[i] = new Float_t[mapping::detNum[i]];
eT[i] = new ULong64_t[mapping::detNum[i]]; eT[i] = new ULong64_t[mapping::detNum[i]];
@ -198,26 +238,24 @@ void GeneralSort::SetUpTree(){
} }
newSaveTree->Branch( mapping::detTypeName[i].c_str(), eE[i], Form("%s[%d]/F", mapping::detTypeName[i].c_str(), mapping::detNum[i])); newSaveTree->Branch( mapping::detTypeName[i].c_str(), eE[i], Form("%s[%d]/F", mapping::detTypeName[i].c_str(), mapping::detNum[i]));
newSaveTree->Branch( (mapping::detTypeName[i]+"_t").c_str(), eT[i], Form("%s_t[%d]/l", mapping::detTypeName[i].c_str(), mapping::detNum[i])); newSaveTree->Branch( (mapping::detTypeName[i]+"_t").c_str(), eT[i], Form("%s_Timestamp[%d]/l", mapping::detTypeName[i].c_str(), mapping::detNum[i]));
} }
if( isTraceExist && traceMethod > 0){ if( isTraceExist && traceMethod >= 0){
arr = new TClonesArray("TGraph"); arr = new TClonesArray("TGraph");
newSaveTree->Branch("trace", arr, 256000); newSaveTree->Branch("trace", arr, 256000);
arr->BypassStreamer(); arr->BypassStreamer();
arr->Clear("C");
if( traceMethod > 1 ){ if( traceMethod > 0 ){
teE = new Float_t * [mapping::nDetType]; teE = new Float_t * [mapping::nDetType];
teT = new Float_t * [mapping::nDetType]; teT = new Float_t * [mapping::nDetType];
teR = new Float_t * [mapping::nDetType]; teR = new Float_t * [mapping::nDetType];
for( int i = 0 ; i < mapping::nDetType; i++){ for( int i = 0 ; i < mapping::nDetType; i++){
if( mapping::detNum[i] == 0 ) continue;
teE[i] = new Float_t[mapping::detNum[i]]; teE[i] = new Float_t[mapping::detNum[i]];
teT[i] = new Float_t[mapping::detNum[i]]; teT[i] = new Float_t[mapping::detNum[i]];
teR[i] = new Float_t[mapping::detNum[i]]; teR[i] = new Float_t[mapping::detNum[i]];
@ -231,14 +269,14 @@ void GeneralSort::SetUpTree(){
//TODO use a blackList to skip some trace //TODO use a blackList to skip some trace
newSaveTree->Branch( ("w" + mapping::detTypeName[i]).c_str(), teE[i], Form("trace_%s[%d]/F", mapping::detTypeName[i].c_str(), mapping::detNum[i])); newSaveTree->Branch( ("w" + mapping::detTypeName[i]).c_str(), teE[i], Form("trace_%s[%d]/F", mapping::detTypeName[i].c_str(), mapping::detNum[i]));
newSaveTree->Branch( ("w" + mapping::detTypeName[i]+"T").c_str(), teT[i], Form("trace_%s_time[%d]/F", mapping::detTypeName[i].c_str(), mapping::detNum[i])); newSaveTree->Branch( ("w" + mapping::detTypeName[i]+"T").c_str(), teT[i], Form("trace_%s_time[%d]/l", mapping::detTypeName[i].c_str(), mapping::detNum[i]));
newSaveTree->Branch( ("w" + mapping::detTypeName[i]+"R").c_str(), teR[i], Form("trace_%s_rise[%d]/F", mapping::detTypeName[i].c_str(), mapping::detNum[i])); newSaveTree->Branch( ("w" + mapping::detTypeName[i]+"R").c_str(), teR[i], Form("trace_%s_rise[%d]/l", mapping::detTypeName[i].c_str(), mapping::detNum[i]));
} }
} }
} }
newSaveTree->Print("toponly"); //very important, otherwise the mac will blow up.
if( !isParallel ) newSaveTree->Print("toponly");
} }
//^############################################################## //^##############################################################
@ -255,21 +293,19 @@ void GeneralSort::DecodeOption(){
isParallel = false; isParallel = false;
} }
PrintTraceMethod(); printf("|%s| %d %s %d \n", option.Data(), traceMethod, saveFileName.Data(), isParallel);
printf(" Parallel: %s \n", isParallel ? "Yes" : "No");
printf(" save file: %s \n", saveFileName.Data());
} }
//^############################################################## //^##############################################################
void GeneralSort::Init(TTree *tree){ void GeneralSort::Init(TTree *tree){
printf("============= %s\n", __func__);
// Set branch addresses and branch pointers // Set branch addresses and branch pointers
if (!tree) return; if (!tree) return;
fChain = tree; fChain = tree;
fChain->SetMakeClass(1); fChain->SetMakeClass(1);
fChain->SetBranchAddress("evID", &evID, &b_evID); fChain->SetBranchAddress("evID", &evID, &b_event_ID);
fChain->SetBranchAddress("multi", &multi, &b_multi); fChain->SetBranchAddress("multi", &multi, &b_multi);
fChain->SetBranchAddress("bd", bd, &b_bd); fChain->SetBranchAddress("bd", bd, &b_bd);
fChain->SetBranchAddress("ch", ch, &b_ch); fChain->SetBranchAddress("ch", ch, &b_ch);
@ -278,27 +314,30 @@ void GeneralSort::Init(TTree *tree){
fChain->SetBranchAddress("lowFlag", lowFlag, &b_lowFlag); fChain->SetBranchAddress("lowFlag", lowFlag, &b_lowFlag);
fChain->SetBranchAddress("highFlag", highFlag, &b_highFlag); fChain->SetBranchAddress("highFlag", highFlag, &b_highFlag);
TBranch * br = (TBranch *) fChain->GetListOfBranches()->FindObject("traceLen"); TBranch * br = (TBranch *) fChain->GetListOfBranches()->FindObject("tl");
if( br == NULL ){ if( br == NULL ){
printf(" ++++++++ no Trace.\n"); printf(" ++++++++ no Trace.\n");
isTraceExist = false; isTraceExist = false;
}else{ }else{
printf(" ++++++++ Found Trace.\n"); printf(" ++++++++ Found Trace.\n");
isTraceExist = true; isTraceExist = true;
fChain->SetBranchAddress("traceLen", tl, &b_tl); fChain->SetBranchAddress("tl", tl, &b_tl);
fChain->SetBranchAddress("trace", trace, &b_trace); fChain->SetBranchAddress("trace", trace, &b_trace);
} }
NumEntries = fChain->GetEntries(); NumEntries = fChain->GetEntries();
printf( " ======== total Entry : %ld\n", NumEntries); printf( " ========== total Entry : %ld\n", NumEntries);
//########################### Get Option //########################### Get Option
DecodeOption(); DecodeOption();
SetUpTree(); if( isTraceExist ){
PrintTraceMethod();
}else{
printf("++++++++ no Trace found\n");
}
gFit = new TF1("gFit", fitFunc, 0, 1250, numPara); SetUpTree();
gFit->SetLineColor(6);
printf("---- end of Init %s\n ", __func__); printf("---- end of Init %s\n ", __func__);
@ -311,49 +350,13 @@ Bool_t GeneralSort::Notify(){
void GeneralSort::PrintTraceMethod(){ void GeneralSort::PrintTraceMethod(){
const char* traceMethodStr; const char* traceMethodStr;
switch(traceMethod) { switch(traceMethod) {
case 0 : traceMethodStr = "Ignore Trace"; break; case -1 : traceMethodStr = "Ignore Trace"; break;
case 1 : traceMethodStr = "None and Copy Trace"; break; case 0 : traceMethodStr = "Copy"; break;
case 2 : traceMethodStr = "Fit"; break; case 1 : traceMethodStr = "Fit"; break;
case 3 : traceMethodStr = "Trapezoid"; break; case 2 : traceMethodStr = "Trapezoid"; break;
default: traceMethodStr = "Unknown"; break; default: traceMethodStr = "Unknown"; break;
} }
printf("\033[1;33m ===== Trace method ? %s (%d) \033[m\n", traceMethodStr, traceMethod); printf("\033[1;33m ===== Trace method ? %s \033[m\n", traceMethodStr);
}
void GeneralSort::CleanUpMemory(){
printf("Clean up memory");
if( traceMethod > 1 ){
for( int i = 0 ; i < mapping::nDetType; i++){
if( mapping::detNum[i] == 0 ) continue;
delete [] teE[i];
delete [] teT[i];
delete [] teR[i];
delete [] eE[i];
delete [] eT[i];
}
delete [] teE;
delete [] teT;
delete [] teR;
}
for( int i = 0 ; i < mapping::nDetType; i++){
if( mapping::detNum[i] == 0 ) continue;
delete [] eE[i];
delete [] eT[i];
}
delete [] eE;
delete [] eT;
//trace
if( arr ) delete arr ;
if( gTrace ) delete gTrace;
if( gFit ) delete gFit;
if( arrTrapezoid ) delete arrTrapezoid ;
if( gTrapezoid ) delete gTrapezoid;
printf(".... done\n");
} }
#endif // #ifdef GeneralSort_cxx #endif // #ifdef GeneralSort_cxx

8
Armory/GeneralSortAgent.C → armory/GeneralSortAgent.C
View File

@ -1,11 +1,11 @@
#include "TTree.h" #include "TTree.h"
#include "TProof.h"
#include "TChain.h" #include "TChain.h"
#include "TMacro.h" #include "TMacro.h"
#include "TFile.h" #include "TFile.h"
#include "TProof.h"
void GeneralSortAgent(Int_t runNum, int nWorker = 1, int traceMethod = 0){ void GeneralSortAgent(Int_t runNum, int nWorker = 1, int traceMethod = -1){
TString name; TString name;
name.Form("../root_data/run%03d.root", runNum); name.Form("../root_data/run%03d.root", runNum);
@ -25,7 +25,7 @@ void GeneralSortAgent(Int_t runNum, int nWorker = 1, int traceMethod = 0){
if( abs(nWorker) == 1){ if( abs(nWorker) == 1){
option.Form("%d,../root_data/gen_run%03d.root,%d", traceMethod, runNum, 0); option.Form("%d,../root_data/gen_run%03d.root,%d", traceMethod, runNum, 0);
chain->Process("../Armory/GeneralSort.C+", option); chain->Process("../armory/GeneralSort.C+", option);
}else{ }else{
@ -35,7 +35,7 @@ void GeneralSortAgent(Int_t runNum, int nWorker = 1, int traceMethod = 0){
chain->SetProof(); chain->SetProof();
option.Form("%d,../root_data/gen_run%03d.root,%d", traceMethod, runNum, 1); option.Form("%d,../root_data/gen_run%03d.root,%d", traceMethod, runNum, 1);
chain->Process("../Armory/GeneralSort.C+", option); chain->Process("../armory/GeneralSort.C+", option);
} }
//========== open the output root and copy teh timestamp Marco //========== open the output root and copy teh timestamp Marco

287
armory/Hit.h Normal file
View File

@ -0,0 +1,287 @@
#ifndef HIT_H
#define HIT_H
#include <stdio.h>
#include <cstdlib>
#include <stdint.h>
#include <string>
#define MaxTraceLenght 8100
enum DataFormat{
ALL = 0x00,
OneTrace = 0x01,
NoTrace = 0x02,
Minimum = 0x03,
MiniWithFineTime = 0x04,
Raw = 0x0A,
};
namespace DPPType{
const std::string PHA = "DPP_PHA";
const std::string PSD = "DPP_PSD";
};
class Hit {
public:
unsigned short dataType;
std::string DPPType;
///============= for dpp-pha
uint8_t channel; // 6 bit
uint16_t energy; // 16 bit
uint16_t energy_short; // 16 bit, only for PSD
uint64_t timestamp; // 48 bit
uint16_t fine_timestamp; // 16 bit
uint16_t flags_low_priority; // 12 bit
uint16_t flags_high_priority; // 8 bit
size_t traceLenght; // 64 bit
uint8_t downSampling; // 8 bit
bool board_fail;
bool flush;
uint8_t analog_probes_type[2]; // 3 bit for PHA, 4 bit for PSD
uint8_t digital_probes_type[4]; // 4 bit for PHA, 5 bit for PSD
int32_t * analog_probes[2]; // 18 bit
uint8_t * digital_probes[4]; // 1 bit
uint16_t trigger_threashold; // 16 bit
size_t event_size; // 64 bit
uint32_t aggCounter; // 32 bit
///============= for raw
uint8_t * data;
size_t dataSize; /// number of byte of the data, size/8 = word [64 bits]
uint32_t n_events;
bool isTraceAllZero;
Hit(){
Init();
}
~Hit(){
ClearMemory();
}
void Init(){
DPPType = DPPType::PHA;
dataType = DataFormat::ALL;
channel = 0;
energy = 0;
energy_short = 0;
timestamp = 0;
fine_timestamp = 0;
downSampling = 0;
board_fail = false;
flush = false;
flags_low_priority = 0;
flags_high_priority = 0;
trigger_threashold = 0;
event_size = 0;
aggCounter = 0;
analog_probes[0] = NULL;
analog_probes[1] = NULL;
digital_probes[0] = NULL;
digital_probes[1] = NULL;
digital_probes[2] = NULL;
digital_probes[3] = NULL;
analog_probes_type[0] = 0xFF;
analog_probes_type[1] = 0xFF;
digital_probes_type[0] = 0xFF;
digital_probes_type[1] = 0xFF;
digital_probes_type[2] = 0xFF;
digital_probes_type[3] = 0xFF;
data = NULL;
isTraceAllZero = true; // indicate trace are all zero
}
void ClearMemory(){
if( data != NULL ) delete data;
if( analog_probes[0] != NULL) delete analog_probes[0];
if( analog_probes[1] != NULL) delete analog_probes[1];
if( digital_probes[0] != NULL) delete digital_probes[0];
if( digital_probes[1] != NULL) delete digital_probes[1];
if( digital_probes[2] != NULL) delete digital_probes[2];
if( digital_probes[3] != NULL) delete digital_probes[3];
isTraceAllZero = true;
}
void SetDataType(unsigned int type, std::string dppType){
dataType = type;
DPPType = dppType;
ClearMemory();
if( dataType == DataFormat::Raw){
data = new uint8_t[20*1024*1024];
}else{
analog_probes[0] = new int32_t[MaxTraceLenght];
analog_probes[1] = new int32_t[MaxTraceLenght];
digital_probes[0] = new uint8_t[MaxTraceLenght];
digital_probes[1] = new uint8_t[MaxTraceLenght];
digital_probes[2] = new uint8_t[MaxTraceLenght];
digital_probes[3] = new uint8_t[MaxTraceLenght];
isTraceAllZero = true;
}
}
void ClearTrace(){
if( isTraceAllZero ) return; // no need to clear again
for( int i = 0; i < MaxTraceLenght; i++){
analog_probes[0][i] = 0;
analog_probes[1][i] = 0;
digital_probes[0][i] = 0;
digital_probes[1][i] = 0;
digital_probes[2][i] = 0;
digital_probes[3][i] = 0;
}
isTraceAllZero = true;
}
void PrintEnergyTimeStamp(){
printf("ch: %2d, energy: %u, timestamp: %lu ch, traceLenght: %lu\n", channel, energy, timestamp, traceLenght);
}
std::string AnaProbeType(uint8_t probeType){
if( DPPType == DPPType::PHA){
switch(probeType){
case 0: return "ADC";
case 1: return "Time filter";
case 2: return "Energy filter";
default : return "none";
}
}else if (DPPType == DPPType::PSD){
switch(probeType){
case 0: return "ADC";
case 9: return "Baseline";
case 10: return "CFD";
default : return "none";
}
}else{
return "none";
}
}
std::string DigiProbeType(uint8_t probeType){
if( DPPType == DPPType::PHA){
switch(probeType){
case 0: return "Trigger";
case 1: return "Time filter armed";
case 2: return "Re-trigger guard";
case 3: return "Energy filter baseline freeze";
case 4: return "Energy filter peaking";
case 5: return "Energy filter peaking ready";
case 6: return "Energy filter pile-up guard";
case 7: return "Event pile-up";
case 8: return "ADC saturation";
case 9: return "ADC saturation protection";
case 10: return "Post-saturation event";
case 11: return "Energy filter saturation";
case 12: return "Signal inhibit";
default : return "none";
}
}else if (DPPType == DPPType::PSD){
switch(probeType){
case 0: return "Trigger";
case 1: return "CFD Filter Armed";
case 2: return "Re-trigger guard";
case 3: return "ADC Input Baseline freeze";
case 20: return "ADC Input OverThreshold";
case 21: return "Charge Ready";
case 22: return "Long Gate";
case 7: return "Pile-Up Trig.";
case 24: return "Short Gate";
case 25: return "Energy Saturation";
case 26: return "Charge over-range";
case 27: return "ADC Input Neg. OverThreshold";
default : return "none";
}
}else{
return "none";
}
}
std::string HighPriority(uint16_t prio){
std::string output;
bool pileup = prio & 0x1;
//bool pileupGuard = (prio >> 1) & 0x1;
//bool eventSaturated = (prio >> 2) & 0x1;
//bool postSatEvent = (prio >> 3) & 0x1;
//bool trapSatEvent = (prio >> 4) & 0x1;
//bool SCA_Event = (prio >> 5) & 0x1;
output = std::string("Pile-up: ") + (pileup ? "Yes" : "No");
return output;
}
//TODO LowPriority
void PrintAll(){
switch(dataType){
case DataFormat::ALL : printf("============= Type : ALL\n"); break;
case DataFormat::OneTrace : printf("============= Type : OneTrace\n"); break;
case DataFormat::NoTrace : printf("============= Type : NoTrace\n"); break;
case DataFormat::MiniWithFineTime : printf("============= Type : Min with FineTimestamp\n"); break;
case DataFormat::Minimum : printf("============= Type : Minimum\n"); break;
case DataFormat::Raw : printf("============= Type : Raw\n"); return; break;
default : return;
}
printf("ch : %2d (0x%02X), fail: %d, flush: %d\n", channel, channel, board_fail, flush);
if( DPPType == DPPType::PHA ) printf("energy: %u, timestamp: %lu, fine_timestamp: %u \n", energy, timestamp, fine_timestamp);
if( DPPType == DPPType::PSD ) printf("energy: %u, energy_S : %u, timestamp: %lu, fine_timestamp: %u \n", energy, energy_short, timestamp, fine_timestamp);
printf("flag (high): 0x%02X, (low): 0x%03X, traceLength: %lu\n", flags_high_priority, flags_low_priority, traceLenght);
printf("Agg counter : %u, trigger Thr.: %u, downSampling: %u \n", aggCounter, trigger_threashold, downSampling);
printf("AnaProbe Type: %s(%u), %s(%u)\n", AnaProbeType(analog_probes_type[0]).c_str(), analog_probes_type[0],
AnaProbeType(analog_probes_type[1]).c_str(), analog_probes_type[1]);
printf("DigProbe Type: %s(%u), %s(%u), %s(%u), %s(%u)\n", DigiProbeType(digital_probes_type[0]).c_str(), digital_probes_type[0],
DigiProbeType(digital_probes_type[1]).c_str(), digital_probes_type[1],
DigiProbeType(digital_probes_type[2]).c_str(), digital_probes_type[2],
DigiProbeType(digital_probes_type[3]).c_str(), digital_probes_type[3]);
}
void PrintTrace(unsigned short ID){
for(unsigned short i = 0; i < (unsigned short)traceLenght; i++){
if( ID == 0 ) printf("%4d| %6d\n", i, analog_probes[0][i]);
if( ID == 1 ) printf("%4d| %6d\n", i, analog_probes[1][i]);
if( ID == 2 ) printf("%4d| %u\n", i, digital_probes[0][i]);
if( ID == 3 ) printf("%4d| %u\n", i, digital_probes[1][i]);
if( ID == 4 ) printf("%4d| %u\n", i, digital_probes[2][i]);
if( ID == 5 ) printf("%4d| %u\n", i, digital_probes[3][i]);
}
}
void PrintAllTrace(){
for(unsigned short i = 0; i < (unsigned short)traceLenght; i++){
printf("%4d| %6d %6d %1d %1d %1d %1d\n", i, analog_probes[0][i],
analog_probes[1][i],
digital_probes[0][i],
digital_probes[1][i],
digital_probes[2][i],
digital_probes[3][i]);
}
}
};
#endif

12
armory/Makefile Normal file
View File

@ -0,0 +1,12 @@
CC=g++
CFLAG= -g
ROOTFLAG=`root-config --cflags --glibs`
all: EventBuilder
EventBuilder: EventBuilder.cpp SolReader.h Hit.h
$(CC) $(CFLAG) EventBuilder.cpp -o EventBuilder ${ROOTFLAG}
clean:
-rm EventBuilder

0
working/obsolete/Monitor_Util.C → armory/Monitor_Util.C
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73
armory/Process_BasicConfig Normal file
View File

@ -0,0 +1,73 @@
#!/bin/bash -l
##############################################
#
# This script define color, PCID, and dataPath
#
##############################################
if [ ! -z $RED ]; then
echo "Process_BasicConfig already loaded."
return
fi
RED='\033[1;31m'
YELLOW='\033[1;33m'
ORANGE='\033[0;33m'
GREEN='\033[1;32m'
BLUE='\033[0;34m'
CYAN='\033[0;36m'
NC='\033[0m' #no color
LRED='\033[1;91m'
############## need to distingish mac and daq
Arch="$(uname -s)"
PCName="$(hostname)"
PCID=-1 #if PCID == 1 (DAQ), 2 (MAC), -1(OTHER)
#------ Set up data folder, check disk space
echo -e "${YELLOW} ##################### Check computer name and arch. ${NC}"
echo "PC name : ${PCName}"
echo "Archetech: ${Arch}"
if [ ${Arch} == "Linux" ] && [ ${PCName} == "solaris-daq" ]; then
PCID=1
pathsSetting=${HOME}/SOLARIS_QT6_DAQ/programSettings.txt
if [ -e ${pathsSetting} ]; then
#echo "Found DAQ programSettings.txt for paths settings"
analysisPath=$(cat ${pathsSetting} | head -n 2 | tail -n 1)
if [ ! "${analysisPath}" = "$SOLARISANADIR" ]; then
echo "The analysisPath from ${analysisPath} is different from present folder $SOLARISANADIR. Abort."
exit
fi
rawDataPathParent=$(cat ${pathsSetting} | head -n 3 | tail -n 1)
rootDataPathParent=$(cat ${pathsSetting} | head -n 4 | tail -n 1)
databaseIP=$(cat ${pathsSetting} | head -n 6 | tail -n 1)
databaseName=$(cat ${pathsSetting} | head -n 7 | tail -n 1)
#echo ${rawDataPathParent}
#echo ${rootDataPathParent}
#echo ${databaseIP}
#echo ${databaseName}
else
echo "${RED} Cannot found DAQ programSettings.txt for path settings ${NC}"
echo "Seek Ryan for help"
exit
fi
fi
if [ ${Arch} == "Darwin" ] && [ ${PCName} == "SOLARISs-Mac-Studio.local" ]; then
PCID=2
rawDataPathParent=${HOME}/experimentalData/
rootDataPathParent=${HOME}/experimentalData/
fi

34
Armory/Process_Download → armory/Process_Download
View File

@ -1,7 +1,5 @@
#!/bin/bash #!/bin/bash
echo -e "${RED}##################### Loading Process_Download.sh ${NC}"
if [ $# -eq 0 ] || [ $1 == "-help" ]; then if [ $# -eq 0 ] || [ $1 == "-help" ]; then
echo "$./process_Download [RunNum]" echo "$./process_Download [RunNum]"
echo " RunNum = run number" echo " RunNum = run number"
@ -13,12 +11,10 @@ RUN=$1
runNum=${RUN#0} #remove zero runNum=${RUN#0} #remove zero
RUN=$(printf '%03d' $runNum) ##add back the zero RUN=$(printf '%03d' $runNum) ##add back the zero
source $SOLARISANADIR/Armory/Process_BasicConfig source $SOLARISANADIR/armory/Process_BasicConfig
source $SOLARISANADIR/working/expName.sh
if [ -z $expName ]; then
source $SOLARISANADIR/working/expName.sh
fi
MacRawDataPath=$rawDataPathParent/$expName/
IP=solarisdaq # defined at ~/.ssh/config IP=solarisdaq # defined at ~/.ssh/config
USR=solaris USR=solaris
@ -46,7 +42,7 @@ if [ ${RUN} == "all" ]; then
fi fi
echo -e "$YELLOW=============================================$NC" echo -e "$YELLOW=============================================$NC"
tail -10 $MacRawDataPath/raw_data/RunTimeStamp.dat tail -10 $MacRawDataPath/data/RunTimeStamp.dat
echo -e "$YELLOW=============================================$NC" echo -e "$YELLOW=============================================$NC"
exit 1 exit 1
@ -64,7 +60,7 @@ RUN=$(printf '%03d' ${RUN})
####################################### #######################################
#################### Download raw data #################### Download raw data
echo -e "${CYAN}>>>>>>>>>>>>>>> Download raw data: run ${RUN}${NC}" echo -e "${RED}######################### Download raw data: run ${RUN}${NC}"
if [ ${PCID} -eq 2 ]; then if [ ${PCID} -eq 2 ]; then
#=========== Ping to check the connectivity #=========== Ping to check the connectivity
@ -85,25 +81,25 @@ if [ ${PCID} -eq 2 ]; then
rsync -avuht --progress $USR@$IP:Analysis/working/expName.sh $SOLARISANADIR/working/. rsync -avuht --progress $USR@$IP:Analysis/working/expName.sh $SOLARISANADIR/working/.
fi fi
else else
echo -e "$CYAN############### Only in SOLARIS MAC can donwload data. skip.$NC" echo -e "$RED############### Only in SOLARIS MAC can donwload data. skip.$NC"
fi fi
if [ -z ${rawDataPath}/RunTimeStamp.dat ]; then echo -e "$YELLOW=============================================$NC"
echo -e "$YELLOW=============================================$NC" tail -10 $MacRawDataPath/data/RunTimeStamp.dat
tail -10 ${rawDataPath}/RunTimeStamp.dat echo -e "$YELLOW=============================================$NC"
echo -e "$YELLOW=============================================$NC"
fi
count=`ls -1 ${rawDataPath}/${expName}_${RUN}_*.sol 2>/dev/null | wc -l` count=`ls -1 $SOLARISANADIR/data_raw/${expName}_${RUN}_*.sol 2>/dev/null | wc -l`
echo -e "========================= Number of Files : ${count}${YELLOW}" echo -e "========== Number of Files : ${count}${NC}"
if [ ${count} -eq 0 ]; then if [ ${count} -eq 0 ]; then
echo "${NC}============================================" echo "============================================"
echo "==== RAW Files of RUN-${RUN} not found! " echo "==== RAW Files of RUN-${RUN} not found! "
echo "============================================" echo "============================================"
isRunDataExist=false isRunDataExist=false
exit 1 exit 1
else else
du -hc ${rawDataPath}//${expName}_${RUN}_*.sol echo -e "${YELLOW}"
du -hc $SOLARISANADIR/data_raw/${expName}_${RUN}_*.sol
echo -e "$NC=============================================" echo -e "$NC============================================="
isRunDataExist=true isRunDataExist=true
fi fi

29
Armory/Process_EventBuilder → armory/Process_EventBuilder
View File

@ -1,21 +1,11 @@
#!/bin/bash #!/bin/bash
echo -e "${RED}##################### Loading Process_EventBuilder.sh ${NC}"
if [ -z $SOLARISANADIR ]; then if [ -z $SOLARISANADIR ]; then
echo "###### env variable SOLARISANADIR not defined. Abort. Please run the SOLARIS.sh." echo "###### env variable SOLARISANADIR not defined. Abort. Please run the SOLARIS.sh."
echo "better add \"source <path_to_SOLARIS.sh>\" into .bashrc" echo "better add \"source <path_to_SOLARIS.sh>\" into .bashrc"
exit exit
fi fi
if command -v EventBuilder > /dev/null 2>&1; then
echo "EventBuilder exists"
else
echo -e "${RED}EventBuilder does not exist${NC}"
echo -e "${RED}Create a symbolic link of the EventBuilder from the SOLARIS_DAQ/Aux/${NC}"
exit
fi
if [ $# -ne 3 ] || [ $1 == "-help" ]; then if [ $# -ne 3 ] || [ $1 == "-help" ]; then
echo "$ Process_EventBuilder [RunNum] [EventBuild] [timeWin]" echo "$ Process_EventBuilder [RunNum] [EventBuild] [timeWin]"
echo " RunNum = run number" echo " RunNum = run number"
@ -29,17 +19,23 @@ RUN=$1
EventBld=$2 EventBld=$2
timeWin=$3 timeWin=$3
source ${SOLARISANADIR}/Armory/Process_BasicConfig source ${SOLARISANADIR}/armory/Process_BasicConfig
if [ -z $expName ]; then source ${SOLARISANADIR}/working/expName.sh
source $SOLARISANADIR/working/expName.sh
fi
runNum=${RUN#0} #remove zero runNum=${RUN#0} #remove zero
RUN=$(printf '%03d' $runNum) ##add back the zero RUN=$(printf '%03d' $runNum) ##add back the zero
rawDataPath=$SOLARISANADIR/data_raw
rootDataPath=$SOLARISANADIR/root_data
rawDataPattern="$rawDataPath/${expName}_${RUN}_*.sol" rawDataPattern="$rawDataPath/${expName}_${RUN}_*.sol"
rootDataName="$rootDataPath/run$RUN.root" rootDataName="$rootDataPath/run$RUN.root"
dir=$(pwd)
cd ${SOLARISANADIR}/armory
make
cd ${dir}
#==== check raw data exist #==== check raw data exist
isRawDataExist=`ls -1 ${rawDataPattern}* 2>/dev/null | wc -l` isRawDataExist=`ls -1 ${rawDataPattern}* 2>/dev/null | wc -l`
@ -48,10 +44,11 @@ if [ ! $isRawDataExist -gt 0 ]; then
exit exit
fi fi
echo -e "${YELLOW} ============== list of files ${NC}" echo -e "${CYAN} ============== list of files ${NC}"
\du -h ${rawDataPattern}* \du -h ${rawDataPattern}*
totSize=$(\du -hc ${rawDataPattern}* | tail -n 1 | awk '{print $1}') totSize=$(\du -hc ${rawDataPattern}* | tail -n 1 | awk '{print $1}')
echo -e "${YELLOW} ============== total file size : ${totSize}${NC}" echo -e "${CYAN} ============== total file size : ${totSize}${NC}"
#==== check raw data timeStamp #==== check raw data timeStamp

0
Armory/Process_MultiRuns → armory/Process_MultiRuns
View File

52
Armory/Process_Run → armory/Process_Run
View File

@ -9,27 +9,16 @@ if [ -z $SOLARISANADIR ]; then
exit exit
fi fi
if [ "$PWD" != "${SOLARISANADIR}/working" ]; then
echo "============= go to the Working directory"
cd "${SOLARISANADIR}/working"
fi
if [ $# -eq 0 ] || [ $1 == "-help" ]; then if [ $# -eq 0 ] || [ $1 == "-help" ]; then
echo "$ Process_Run [RunNum] [EventBuild] [GeneralSort] [Monitor]" echo "$ Process_Run [RunNum] [EventBuild] [GeneralSort] [TraceMethod] [Monitor]"
echo " RunNum = run number / \"lastRun\" " echo " RunNum = run number / \"lastRun\" "
echo " EventBld = 2/1/0/-1/-2 || 2 = with Trace" echo " EventBld = 2/1/0/-1/-2 || 2 = with Trace"
echo " GeneralSort = n/0/-n || n = number of worker + TraceMethod * 100" echo " GeneralSort = n/0/-n || n = number of worker"
echo " TraceMethod = 0 no trace" echo " TraceMethod = -1/0/1/2 || -1 no trace, 0 save trace, 1 fit, 2 trapezoid(not implemented)"
echo " = 1 save trace"
echo " = 2 WS fit"
echo " = 3 trapezoid(not implemented)"
echo " e.g. 208 = WS trace with 8 workers"
#======== change Monitor to Action.
echo " Monitor = 2/1/0 || 1 = single run, 2 = using the list in ChainMonitors.C" echo " Monitor = 2/1/0 || 1 = single run, 2 = using the list in ChainMonitors.C"
echo "" echo ""
echo " * negative option = force." echo " * negative option = force (except for TraceMethod and Monitor)."
echo " * Defult timeWindow for Event builder is 100 tick = 800 ns." echo " * Defult timeWindow for Event builder is 100 tick = 800 ns."
echo "" echo ""
exit 1 exit 1
@ -37,25 +26,22 @@ fi;
RUN=$1 RUN=$1
runNum=$1 runNum=$1
EventBld=1 EventBld=2
nWorker=1 nWorker=1
TraceMethod=0 TraceMethod=-1
isMonitor=1 isMonitor=1
if [ $# -ge 2 ]; then EventBld=$2; fi if [ $# -ge 2 ]; then EventBld=$2; fi
if [ $# -ge 3 ]; then nWorker=$3; fi if [ $# -ge 3 ]; then nWorker=$3; fi
if [ $# -ge 4 ]; then isMonitor=$4; fi if [ $# -ge 4 ]; then TraceMethod=$4; fi
if [ $# -ge 5 ]; then isMonitor=$5; fi
if [ "$RUN" == "lastRun" ]; then
temp=$((nWorker / 100)); RUN=$runID
if [ $temp -lt 0 ]; then
TraceMethod=$((-1 * temp));
fi fi
nWorker=$((nWorker % 100 )); RUN=${RUN##*(0)} #remove zero
RUN=$(printf '%03d' $RUN) ##add back the zero
runNum=${RUN#0} #remove zero
RUN=$(printf '%03d' $runNum) ##add back the zero
################################### Setting display ################################### Setting display
echo "#################################################" echo "#################################################"
@ -68,11 +54,17 @@ echo "### Trace Method : $TraceMethod"
echo "### Monitor : $isMonitor" echo "### Monitor : $isMonitor"
echo "#################################################" echo "#################################################"
source ${SOLARISANADIR}/Armory/Process_BasicConfig source ${SOLARISANADIR}/armory/Process_BasicConfig
source ${rawDataPath}/expName.sh source ${SOLARISANADIR}/working/expName.sh
if [ "$PWD" != "${SOLARISANADIR}/working" ]; then
echo "============= go to the Working directory"
cd "${SOLARISANADIR}/working"
fi
#################################### CHECK IS RUN DATA EXIST #################################### CHECK IS RUN DATA EXIST
isRunDataExist=false isRunDataExist=true
#################################### EVENT BUILDER #################################### EVENT BUILDER
source Process_Download $RUN source Process_Download $RUN
@ -91,7 +83,7 @@ fi
if [ $isMonitor -eq 0 ]; then if [ $isMonitor -eq 0 ]; then
echo -e "${LRED}>>>>>>>>>>>>>>>>>>>>> Monitor Skipped by user. ${NC}" echo -e "${LRED}>>>>>>>>>>>>>>>>>>>>> Monitor Skipped by user. ${NC}"
elif [ $isMonitor -eq 1 ]; then elif [ $isMonitor -eq 1 ]; then
root -l "ChainMonitors.C($runNum)" root -l "ChainMonitors.C($RUN)"
elif [ $isMonitor -eq 2 ]; then elif [ $isMonitor -eq 2 ]; then
root -l "ChainMonitors.C" root -l "ChainMonitors.C"
fi fi

12
Armory/Process_Sort → armory/Process_Sort
View File

@ -1,7 +1,5 @@
#!/bin/bash -l #!/bin/bash -l
echo -e "${RED}##################### Loading Process_Sort.sh ${NC}"
if [ -z $SOLARISANADIR ]; then if [ -z $SOLARISANADIR ]; then
echo "###### env variable SOLARISANADIR not defined. Abort. Please run the SOLARIS.sh." echo "###### env variable SOLARISANADIR not defined. Abort. Please run the SOLARIS.sh."
echo "better add \"source <path_to_SOLARIS.sh>\" into .bashrc" echo "better add \"source <path_to_SOLARIS.sh>\" into .bashrc"
@ -21,10 +19,8 @@ RUN=$1
nWorker=$2 nWorker=$2
TraceMethod=$3 TraceMethod=$3
source $SOLARISANADIR/Armory/Process_BasicConfig source $SOLARISANADIR/armory/Process_BasicConfig
if [ -z $expName ]; then source $SOLARISANADIR/working/expName.sh
source $SOLARISANADIR/working/expName.sh
fi
runNum=${RUN#0} #remove zero runNum=${RUN#0} #remove zero
RUN=$(printf '%03d' $runNum) ##add back the zero RUN=$(printf '%03d' $runNum) ##add back the zero
@ -72,7 +68,7 @@ else
if [ $nWorker -le -1 ]; then if [ $nWorker -le -1 ]; then
echo -e "${LRED}>>>>>>>>>>>>>>> Force GeneralSort $(date) ${NC}" echo -e "${LRED}>>>>>>>>>>>>>>> Force GeneralSort $(date) ${NC}"
root -l -q -b "$SOLARISANADIR/Armory/GeneralSortAgent.C($runNum, $nWorker, $TraceMethod)" root -l -q -b "$SOLARISANADIR/armory/GeneralSortAgent.C($runNum, $nWorker, $TraceMethod)"
echo -e "${LRED}<<<<<<<<<<<<<<<< Done GeneralSort $(date) ${NC}" echo -e "${LRED}<<<<<<<<<<<<<<<< Done GeneralSort $(date) ${NC}"
fi fi
@ -81,7 +77,7 @@ else
if [ $rootDataTime -ge $genRootDataTime ]; then if [ $rootDataTime -ge $genRootDataTime ]; then
echo -e "${LRED}>>>>>>>>>>>>>>>>>>>>> GeneralSort $(date) ${NC}" echo -e "${LRED}>>>>>>>>>>>>>>>>>>>>> GeneralSort $(date) ${NC}"
root -l -q -b "$SOLARISANADIR/Armory/GeneralSortAgent.C($runNum, $nWorker, $TraceMethod)" root -l -q -b "$SOLARISANADIR/armory/GeneralSortAgent.C($runNum, $nWorker, $TraceMethod)"
echo -e "${LRED}<<<<<<<<<<<<<<<< Done GeneralSort $(date) ${NC}" echo -e "${LRED}<<<<<<<<<<<<<<<< Done GeneralSort $(date) ${NC}"
else else

258
armory/SolReader.h Normal file
View File

@ -0,0 +1,258 @@
#ifndef SOLREADER_H
#define SOLREADER_H
#include <stdio.h> /// for FILE
#include <cstdlib>
#include <string>
#include <vector>
#include <unistd.h>
#include <time.h> // time in nano-sec
#include "Hit.h"
class SolReader {
private:
FILE * inFile;
unsigned int inFileSize;
unsigned int filePos;
unsigned int totNumBlock;
unsigned short blockStartIdentifier;
unsigned int numBlock;
bool isScanned;
void init();
std::vector<unsigned int> blockPos;
public:
SolReader();
SolReader(std::string fileName, unsigned short dataType);
~SolReader();
void OpenFile(std::string fileName);
int ReadNextBlock(int isSkip = 0); // opt = 0, noraml, 1, fast
int ReadBlock(unsigned int index, bool verbose = false);
void ScanNumBlock();
bool IsEndOfFile() const {return (filePos >= inFileSize ? true : false);}
unsigned int GetBlockID() const {return numBlock - 1;}
unsigned int GetNumBlock() const {return numBlock;}
unsigned int GetTotalNumBlock() const {return totNumBlock;}
unsigned int GetFilePos() const {return filePos;}
unsigned int GetFileSize() const {return inFileSize;}
void RewindFile();
Hit * hit;
};
void SolReader::init(){
inFileSize = 0;
numBlock = 0;
filePos = 0;
totNumBlock = 0;
hit = new Hit();
isScanned = false;
blockPos.clear();
}
SolReader::SolReader(){
init();
}
SolReader::SolReader(std::string fileName, unsigned short dataType = 0){
init();
OpenFile(fileName);
hit->SetDataType(dataType, DPPType::PHA);
}
SolReader::~SolReader(){
if( !inFile ) fclose(inFile);
delete hit;
}
inline void SolReader::OpenFile(std::string fileName){
inFile = fopen(fileName.c_str(), "r");
if( inFile == NULL ){
printf("Cannot open file : %s \n", fileName.c_str());
}else{
fseek(inFile, 0L, SEEK_END);
inFileSize = ftell(inFile);
rewind(inFile);
}
}
inline int SolReader::ReadBlock(unsigned int index, bool verbose){
if( isScanned == false) return -1;
if( index >= totNumBlock )return -1;
fseek(inFile, 0L, SEEK_SET);
if( verbose ) printf("Block index: %u, File Pos: %u byte\n", index, blockPos[index]);
fseek(inFile, blockPos[index], SEEK_CUR);
filePos = blockPos[index];
numBlock = index;
return ReadNextBlock();
}
inline int SolReader::ReadNextBlock(int isSkip){
if( inFile == NULL ) return -1;
if( feof(inFile) ) return -1;
if( filePos >= inFileSize) return -1;
fread(&blockStartIdentifier, 2, 1, inFile);
if( (blockStartIdentifier & 0xAA00) != 0xAA00 ) {
printf("header fail.\n");
return -2 ;
}
if( ( blockStartIdentifier & 0xF ) == DataFormat::Raw ){
hit->SetDataType(DataFormat::Raw, ((blockStartIdentifier >> 1) & 0xF) == 0 ? DPPType::PHA : DPPType::PSD);
}
hit->dataType = blockStartIdentifier & 0xF;
hit->DPPType = ((blockStartIdentifier >> 4) & 0xF) == 0 ? DPPType::PHA : DPPType::PSD;
if( hit->dataType == DataFormat::ALL){
if( isSkip == 0 ){
fread(&hit->channel, 1, 1, inFile);
fread(&hit->energy, 2, 1, inFile);
if( hit->DPPType == DPPType::PSD ) fread(&hit->energy_short, 2, 1, inFile);
fread(&hit->timestamp, 6, 1, inFile);
fread(&hit->fine_timestamp, 2, 1, inFile);
fread(&hit->flags_high_priority, 1, 1, inFile);
fread(&hit->flags_low_priority, 2, 1, inFile);
fread(&hit->downSampling, 1, 1, inFile);
fread(&hit->board_fail, 1, 1, inFile);
fread(&hit->flush, 1, 1, inFile);
fread(&hit->trigger_threashold, 2, 1, inFile);
fread(&hit->event_size, 8, 1, inFile);
fread(&hit->aggCounter, 4, 1, inFile);
}else{
fseek(inFile, hit->DPPType == DPPType::PHA ? 31 : 33, SEEK_CUR);
}
fread(&hit->traceLenght, 8, 1, inFile);
if( isSkip == 0){
fread(hit->analog_probes_type, 2, 1, inFile);
fread(hit->digital_probes_type, 4, 1, inFile);
fread(hit->analog_probes[0], hit->traceLenght*4, 1, inFile);
fread(hit->analog_probes[1], hit->traceLenght*4, 1, inFile);
fread(hit->digital_probes[0], hit->traceLenght, 1, inFile);
fread(hit->digital_probes[1], hit->traceLenght, 1, inFile);
fread(hit->digital_probes[2], hit->traceLenght, 1, inFile);
fread(hit->digital_probes[3], hit->traceLenght, 1, inFile);
}else{
fseek(inFile, 6 + hit->traceLenght*(12), SEEK_CUR);
}
}else if( hit->dataType == DataFormat::OneTrace){
if( isSkip == 0 ){
fread(&hit->channel, 1, 1, inFile);
fread(&hit->energy, 2, 1, inFile);
if( hit->DPPType == DPPType::PSD ) fread(&hit->energy_short, 2, 1, inFile);
fread(&hit->timestamp, 6, 1, inFile);
fread(&hit->fine_timestamp, 2, 1, inFile);
fread(&hit->flags_high_priority, 1, 1, inFile);
fread(&hit->flags_low_priority, 2, 1, inFile);
}else{
fseek(inFile, hit->DPPType == DPPType::PHA ? 14 : 16, SEEK_CUR);
}
fread(&hit->traceLenght, 8, 1, inFile);
if( isSkip == 0){
fread(&hit->analog_probes_type[0], 1, 1, inFile);
fread(hit->analog_probes[0], hit->traceLenght*4, 1, inFile);
}else{
fseek(inFile, 1 + hit->traceLenght*4, SEEK_CUR);
}
}else if( hit->dataType == DataFormat::NoTrace){
if( isSkip == 0 ){
fread(&hit->channel, 1, 1, inFile);
fread(&hit->energy, 2, 1, inFile);
if( hit->DPPType == DPPType::PSD ) fread(&hit->energy_short, 2, 1, inFile);
fread(&hit->timestamp, 6, 1, inFile);
fread(&hit->fine_timestamp, 2, 1, inFile);
fread(&hit->flags_high_priority, 1, 1, inFile);
fread(&hit->flags_low_priority, 2, 1, inFile);
}else{
fseek(inFile, hit->DPPType == DPPType::PHA ? 14 : 16, SEEK_CUR);
}
}else if( hit->dataType == DataFormat::MiniWithFineTime){
if( isSkip == 0 ){
fread(&hit->channel, 1, 1, inFile);
fread(&hit->energy, 2, 1, inFile);
if( hit->DPPType == DPPType::PSD ) fread(&hit->energy_short, 2, 1, inFile);
fread(&hit->timestamp, 6, 1, inFile);
fread(&hit->fine_timestamp, 2, 1, inFile);
}else{
fseek(inFile, hit->DPPType == DPPType::PHA ? 11 : 13, SEEK_CUR);
}
}else if( hit->dataType == DataFormat::Minimum){
if( isSkip == 0 ){
fread(&hit->channel, 1, 1, inFile);
fread(&hit->energy, 2, 1, inFile);
if( hit->DPPType == DPPType::PSD ) fread(&hit->energy_short, 2, 1, inFile);
fread(&hit->timestamp, 6, 1, inFile);
}else{
fseek(inFile, hit->DPPType == DPPType::PHA ? 9 : 11, SEEK_CUR);
}
}else if( hit->dataType == DataFormat::Raw){
fread(&hit->dataSize, 8, 1, inFile);
if( isSkip == 0){
fread(hit->data, hit->dataSize, 1, inFile);
}else{
fseek(inFile, hit->dataSize, SEEK_CUR);
}
}
numBlock ++;
filePos = ftell(inFile);
return 0;
}
void SolReader::RewindFile(){
rewind(inFile);
filePos = 0;
numBlock = 0;
}
void SolReader::ScanNumBlock(){
if( inFile == NULL ) return;
if( feof(inFile) ) return;
numBlock = 0;
blockPos.clear();
blockPos.push_back(0);
while( ReadNextBlock(1) == 0){
blockPos.push_back(filePos);
printf("%u, %.2f%% %u/%u\n\033[A\r", numBlock, filePos*100./inFileSize, filePos, inFileSize);
}
totNumBlock = numBlock;
numBlock = 0;
isScanned = true;
printf("\nScan complete: number of data Block : %u\n", totNumBlock);
rewind(inFile);
filePos = 0;
//for( int i = 0; i < totNumBlock; i++){
// printf("%7d | %u \n", i, blockPos[i]);
//}
}
#endif

0
Armory/readRawTrace.C → armory/readRawTrace.C
View File

0
Armory/readTrace.C → armory/readTrace.C
View File

89
working/ChainMonitors.C
View File

@ -2,36 +2,107 @@
#include "TObjArray.h" #include "TObjArray.h"
#include "TFile.h" #include "TFile.h"
#include "TMacro.h" #include "TMacro.h"
#include "TChain.h" std::string create_range_string(const std::vector<int>& nums);
TChain *gen_tree = nullptr;
void ChainMonitors(int RUNNUM = -1, int RUNNUM2 = -1) { void ChainMonitors(int RUNNUM = -1, int RUNNUM2 = -1) {
///default saveCanvas = false, no save Cavas ///default saveCanvas = false, no save Cavas
/// = true, save Canvas /// = true, save Canvas
gen_tree = new TChain("gen_tree"); TChain * chain = new TChain("gen_tree");
if( RUNNUM == -1){ if( RUNNUM == -1){
/// this list only for manual Chain sort /// this list only for manual Chain sort
///********** start Marker for AutoCalibration. ///********** start Marker for AutoCalibration.
gen_tree->Add("../root_data/trace_run033.root"); chain->Add("../root_data/gen_run005.root");
chain->Add("../root_data/gen_run003.root");
///chain->Add("../root_data/trace_run135.root");
///********** end Marker for AutoCalibration. ///********** end Marker for AutoCalibration.
}else{ }else{
TString fileName; TString fileName;
int endRUNNUM = RUNNUM2; int endRUNNUM = RUNNUM2;
if( RUNNUM2 == -1) endRUNNUM = RUNNUM; if( RUNNUM2 == -1) endRUNNUM = RUNNUM;
for( int i = RUNNUM ; i <= endRUNNUM ; i++){ for( int i = RUNNUM ; i <= endRUNNUM ; i++){
fileName.Form("../root_data/gen_run%03d.root", i); fileName.Form("../root_data/gen_run%03d.root", i);
gen_tree->Add(fileName); chain->Add(fileName);
} }
} }
//^============== should have other things, like calibrations. TObjArray * fileList = chain->GetListOfFiles();
Monitor(gen_tree);
printf("\033[0;31m========================================== Number of Files : %2d\n",fileList->GetEntries());
fileList->Print();
printf("========================================== Number of Files : %2d\033[0m\n",fileList->GetEntries());
printf("---------------------------------- Total Number of entries : %llu \n", chain->GetEntries());
double totDuration = 0;
std::vector<ULong64_t> startTime;
std::vector<ULong64_t> stopTime;
std::vector<int> runList;
for( int i = 0; i < fileList->GetEntries(); i++){
TString fileName = fileList->At(i)->GetTitle();
TFile file(fileName);
TMacro * timeStamp = (TMacro*) file.FindObjectAny("timeStamp");
//timeStamp->Print();
TString haha = timeStamp->GetListOfLines()->At(0)->GetName();
ULong64_t t1 = haha.Atoll();
haha = timeStamp->GetListOfLines()->At(1)->GetName();
ULong64_t t2 = haha.Atoll();
haha = timeStamp->GetListOfLines()->At(2)->GetName();
int RunID = haha.Atoi();
totDuration += (t2-t1)*8./1e9;
startTime.push_back(t1);
stopTime.push_back(t2);
runList.push_back(RunID);
}
//======== format CanvasTitle
std::sort(runList.begin(), runList.end());
TString title = "Run:" + create_range_string(runList);
title += Form(" | %.0f min", totDuration/60.) ;
//Some input to TSelector
Monitor * selector = new Monitor();
selector->SetCanvasTitle(title);
selector->SetStartStopTimes(startTime, stopTime);
chain->Process(selector, "");
delete chain;
delete selector;
} }
std::string create_range_string(const std::vector<int>& nums) {
std::string range_str;
int lastNum = nums[0];
int rangeStart = lastNum;
for (int i = 1; i < nums.size(); i++) {
if (nums[i] == lastNum + 1) {
lastNum = nums[i];
} else {
if (rangeStart == lastNum) {
range_str += std::to_string(rangeStart) + "_";
} else {
range_str += std::to_string(rangeStart) + "-" + std::to_string(lastNum) + "_";
}
rangeStart = lastNum = nums[i];
}
}
// Add the last range
if (rangeStart == lastNum) {
range_str += std::to_string(rangeStart);
} else {
range_str += std::to_string(rangeStart) + "-" + std::to_string(lastNum);
}
return range_str;
}

30
working/Check_Simulation_Config.txt Normal file
View File

@ -0,0 +1,30 @@
/////enum plotID { pEZ, /// 0
///// pRecoilXY, /// 1
///// pRecoilXY1, /// 2
///// pRecoilXY2, /// 3
///// pRecoilRZ, /// 4
///// pRecoilRTR, /// 5
///// pTDiffZ, /// 6
///// pThetaCM, /// 7
///// pThetaCM_Z, /// 8
///// pExCal, /// 9
///// pRecoilRThetaCM, /// 10
///// pArrayXY, /// 11
///// pInfo, /// 12
///// pHitID, /// 13
///// pElum1XY, /// 14
///// pEElum1R, /// 15
///// pElum1RThetaCM, /// 16
///// pEmpty }; /// 17
/////=============================================== User Config
{pEZ, pExCal, pThetaCM, pRecoilRZ, break, pThetaCM_Z, pRecoilXY, pInfo, pRecoilRThetaCM} //Canvas config
hit == 1 && loop <= 1 && thetaCM > 10
60 //elum range
{0,50} //thetaCM range
false //shownKELines
false //isOverRideEx
{-0.5, 4.0} // over-rdied Ex range
///============================== example of gate
hit == 1 && loop <= 1 && thetaCM > 10 && detRowID == 0
hit == 1 && loop <= 1
15 < rhoElum1 && rhoElum1 < 50 && rhoElum2 > 60

570
working/ClassMonPlotter.h
View File

@ -1,570 +0,0 @@
#ifndef ClassMonitorPlotter_H
#define ClassMonitorPlotter_H
#include "../Armory/ClassDetGeo.h"
#include "../Armory/ClassReactionConfig.h"
#include "../Cleopatra/ClassTransfer.h"
#include "../Cleopatra/ClassIsotope.h"
#include "TH1.h"
#include "TH2.h"
#include "TCanvas.h"
#include "TLine.h"
#include "TStyle.h"
/******************************************************************
* This is Plotter for Monitor.C. It contains
* 1) Tcanvas
* 2) various Histograms ( exclude raw data histogram )
*
* The reason for having Plotter is suppert multiple arrays.
* contained the Canvas and Histogram in a class, have better memory management
*
*******************************************************************/
/******************************************************************
* variable and histogram naming rules *
* name are case sensitive, so as any C/C++ code *
* *
* ID is detector ID *
* *
* raw data from gen_tree are e, xf, xn, ring. *
* the x from raw data is x *
* *
* xf + xn = xs, s for sum *
* *
* calibrated data are eCal, xfCal, xnCal, ringCal. *
* the x from cal data is xCal *
* *
* xfCal + xnCal = xsCal *
* *
* since the z is always from xCal, so it calls z. *
* *
* Excitation energy calls Ex *
* *
* *
* TH2D is always using "_" to seperate 2 variables, like e_x *
* *
* histogram with TCutG, add suffix "GC" for Graphical-Cut. *
* *
*******************************************************************/
class MonPlotter{
public:
MonPlotter(unsigned short arrayID, DetGeo * detGeo, int numRDT);
~MonPlotter();
void SetUpCanvas(TString title, int padSize, int divX, int divY);
void SetUpHistograms(int * rawEnergyRange,
int * energyRange,
double * exRange,
int * thetaCMRange,
int * rdtDERange,
int * rdtERange,
int * coinTimeRange);
void LoadRDTGate(TString rdtCutFile);
void Plot();
void PlotRaw(bool isLog = false);
void PlotCal();
void PlotEZ();
void PlotEx();
void PlotRDT(bool isLog = false);
TCanvas * canvas;
//====================== Histograms
//======== raw data
TH2F * he_ID, * hxf_ID, * hxn_ID; // vs ID
TH1I * hArrayMulti;
TH1F ** he, ** hxf, ** hxn; //basic data
TH2F ** hxf_xn, ** he_xs; // correlation
//====== cal data
TH1F ** heCal;
TH2F ** hxfCal_xnCal;
TH2F ** he_xsCal; // raw e vs xf
TH2F ** he_x; // raw e vs x
TH2F * heCal_ID;
//===== eCal V z
TH2F * heCal_z;
TH2F * heCal_zGC;
//======= Recoil
TH2F * hrdt_ID;
TH1F ** hrdt; // single recoil
TH1I * hrdtMulti;
TH2F ** hrdt2D;
TH2F ** hrdt2Dg; // gated
//====== tDiff
TH1F * htDiff;
TH1F * htDiffg;
//====== Ex data
TH1F * hEx;
TH1F ** hExi;
TH2F ** hEx_xCal;
TH1F * hExCut1;
TH1F * hExCut2;
TH2F * hEx_ThetaCM;
//=======================
//======= Recoil Cut
TObjArray * cutList;
private:
unsigned short aID;
int numDet, colDet, rowDet; //array
float detLength;
int numRDT;
float recoilOutter;
double zRange[2] ; // zMin, zMax
TString canvasTitle;
TString suffix;
int numPad;
template<typename T> void CreateListOfHist1D(T ** &histList, int size, const char * namePrefix, const char * TitleForm, int binX, float xMin, float xMax);
template<typename T> void CreateListOfHist2D(T ** &histList, int size, const char * namePrefix, const char * TitleForm, int binX, float xMin, float xMax, int binY, float yMin, float yMax);
};
//^#################################################################################
MonPlotter::MonPlotter(unsigned short arrayID, DetGeo * detGeo, int numRDT){
aID = arrayID;
numDet = detGeo->array[aID].numDet;
colDet = detGeo->array[aID].colDet;
rowDet = numDet/colDet;
detLength = detGeo->array[aID].detLength;
suffix = Form("_%d", arrayID);
this->numRDT = numRDT;
recoilOutter = detGeo->aux[aID].outerRadius;
zRange[0] = detGeo->array[aID].zMin - 50;
zRange[1] = detGeo->array[aID].zMax + 50;
canvas = nullptr;
cutList = nullptr;
}
MonPlotter::~MonPlotter(){
printf("=============== %s\n", __func__);
delete canvas;
delete he_ID;
delete hxf_ID;
delete hxn_ID;
delete hArrayMulti;
delete heCal_ID;
delete heCal_zGC;
delete heCal_z;
delete hEx_ThetaCM;
delete hExCut1;
delete hExCut2;
delete hrdt_ID;
delete hrdtMulti;
delete htDiff;
delete htDiffg;
for( int i = 0; i < numDet ; i++ ){
delete he[i];
delete hxf[i];
delete hxn[i];
delete hxf_xn[i];
delete he_xs[i];
delete he_x[i];
delete heCal[i];
delete hExi[i];
delete hEx_xCal[i];
}
for( int i = 0; i < numRDT; i++){
delete hrdt[i];
}
for( int i = 0; i < numRDT/2; i++){
delete hrdt2D[i];
delete hrdt2Dg[i];
}
delete [] he;
delete [] hxf;
delete [] hxn;
delete [] hxf_xn;
delete [] he_xs;
delete [] he_x;
delete [] heCal;
delete [] hExi;
delete [] hEx_xCal;
delete [] hrdt;
delete [] hrdt2D;
delete [] hrdt2Dg;
delete cutList;
}
void MonPlotter::SetUpCanvas(TString title, int padSize, int divX, int divY){
canvas = new TCanvas("canavs" + suffix, title, 500 * aID, 0, divX * padSize, divY * padSize);
canvas->Divide(divX, divY);
numPad = divX * divY;
canvasTitle = title;
}
template<typename T> void MonPlotter::CreateListOfHist1D(T ** &histList,
int size,
const char * namePrefix,
const char * TitleForm,
int binX, float xMin, float xMax){
//printf(" Making %d of %s.\n", size, namePrefix);
histList = new T * [size];
for(int i = 0; i < size; i++) {
histList[i] = new T(Form("%s%d", namePrefix, i) + suffix, Form(TitleForm, i), binX, xMin, xMax);
}
}
template<typename T> void MonPlotter::CreateListOfHist2D(T ** &histList,
int size,
const char * namePrefix,
const char * TitleForm,
int binX, float xMin, float xMax,
int binY, float yMin, float yMax){
//printf(" Making %d of %s.\n", size, namePrefix);
histList = new T * [size];
for(int i = 0; i < size; i++) {
histList[i] = new T(Form("%s%d", namePrefix, i) + suffix, Form(TitleForm, i), binX, xMin, xMax, binY, yMin, yMax);
}
}
void MonPlotter::SetUpHistograms(int * rawEnergyRange,
int * energyRange,
double * exRange,
int * thetaCMRange,
int * rdtDERange,
int * rdtERange,
int * coinTimeRange){
he_ID = new TH2F("he_ID" + suffix, "Raw e vs array ID; Array ID; Raw e", numDet, 0, numDet, 200, rawEnergyRange[0], rawEnergyRange[1]);
hxf_ID = new TH2F("hxf_ID" + suffix, "Raw xf vs array ID; Array ID; Raw xf", numDet, 0, numDet, 200, rawEnergyRange[0], rawEnergyRange[1]);
hxn_ID = new TH2F("hxn_ID" + suffix, "Raw xn vs array ID; Array ID; Raw xn", numDet, 0, numDet, 200, rawEnergyRange[0], rawEnergyRange[1]);
hArrayMulti = new TH1I("hArrayMulti", "Array Multiplicity ( e and (xf or xn) )", numDet, 0, numDet);
CreateListOfHist1D(he, numDet, "he", "Raw e (ch=%d); e (channel); count", 200, rawEnergyRange[0], rawEnergyRange[1]);
CreateListOfHist1D(hxf, numDet, "hxf", "Raw xf (ch=%d); e (channel); count", 200, rawEnergyRange[0], rawEnergyRange[1]);
CreateListOfHist1D(hxn, numDet, "hxn", "Raw xn (ch=%d); e (channel); count", 200, rawEnergyRange[0], rawEnergyRange[1]);
CreateListOfHist2D(hxf_xn, numDet, "hxf_xn", "Raw xf vs. xn (ch=%d);xf (channel);xn (channel)" , 500, rawEnergyRange[0], rawEnergyRange[1], 500, rawEnergyRange[0], rawEnergyRange[1]);
CreateListOfHist2D(he_xs, numDet, "he_xs", "Raw e vs xf+xn (ch=%d); xf+xn (channel); e (channel)", 500, rawEnergyRange[0], rawEnergyRange[1], 500, rawEnergyRange[0], rawEnergyRange[1]);
CreateListOfHist2D(he_x , numDet, "he_x", "Raw e vs x (ch=%d); x (mm); Raw e (channel)", 500, rawEnergyRange[0], rawEnergyRange[1], 500, -0.5, 1.5);
CreateListOfHist2D(hxfCal_xnCal, numDet, "hxfCal_xnCal", "Corrected XF vs. XN (ch=%d);XF (channel);XN (channel)", 500, 0, rawEnergyRange[1], 500, 0, rawEnergyRange[1]);
CreateListOfHist2D(he_xsCal , numDet, "he_xsCal", "Raw e vs Corrected xf+xn (ch=%d); corrected xf+xn (channel); Raw e (channel)", 500, rawEnergyRange[0], rawEnergyRange[1], 500, rawEnergyRange[0], rawEnergyRange[1]);
CreateListOfHist1D(heCal, numDet, "heCal", "Corrected e (ch=%d); e (MeV); count", 2000, energyRange[0], energyRange[1]);
//====================== E-Z plot
heCal_ID = new TH2F("heCal_ID" + suffix , "E vs. ID; ID;E (MeV)" , numDet, 0, numDet, 400, energyRange[0], energyRange[1]);
heCal_z = new TH2F("heCal_z" + suffix , "E vs. Z;Z (mm);E (MeV)" , 400, zRange[0], zRange[1], 400, energyRange[0], energyRange[1]);
heCal_zGC = new TH2F("heCal_zGC" + suffix ,"E vs. Z gated;Z (mm);E (MeV)", 400, zRange[0], zRange[1], 400, energyRange[0], energyRange[1]);
//===================== Recoil
int rdtRange[2];
rdtRange[0] = rdtDERange[0] < rdtERange[0] ? rdtDERange[0] : rdtERange[0];
rdtRange[1] = rdtDERange[1] > rdtERange[1] ? rdtDERange[1] : rdtERange[1];
hrdt_ID = new TH2F("hrdt_ID" + suffix, "Raw RDT vs ID; ID; Raw RDT", numRDT, 0, numRDT, 400, rdtRange[0], rdtRange[1]);
hrdtMulti = new TH1I("hrdtMulti" + suffix, "RDT Multiplicity", numRDT, 0, numRDT);
hrdt = new TH1F * [numRDT];
hrdt2D = new TH2F * [numRDT/2];
hrdt2Dg = new TH2F * [numRDT/2];
for (Int_t i = 0; i < numRDT ; i++) {
if( i % 2 == 0 ) hrdt[i] = new TH1F(Form("hrdt%d",i), Form("Raw Recoil E(ch=%d); E (channel)",i), 500, rdtERange[0], rdtERange[1]);
if( i % 2 == 1 ) hrdt[i] = new TH1F(Form("hrdt%d",i), Form("Raw Recoil DE(ch=%d); DE (channel)",i), 500, rdtDERange[0], rdtDERange[1]);
///dE vs E
if( i % 2 == 0 ) {
int tempID = i / 2;
hrdt2D[tempID] = new TH2F(Form("hrdt2D%d",tempID) , Form("Raw Recoil DE vs Eres (dE=%d, E=%d); Eres (channel); DE (channel)", i+1, i), 500, rdtERange[0], rdtERange[1],500,rdtDERange[0],rdtDERange[1]);
hrdt2Dg[tempID] = new TH2F(Form("hrdt2Dg%d",tempID), Form("Gated Raw Recoil DE vs Eres (dE=%d, E=%d); Eres (channel); DE (channel)",i+1, i), 500, rdtERange[0], rdtERange[1],500,rdtDERange[0], rdtDERange[1]);
}
}
//===================== tDiff = array_t - rdt_t
htDiff = new TH1F("htDiff" + suffix, "tDiff = e_t - rdt_t", (coinTimeRange[1]-coinTimeRange[0]), coinTimeRange[0], coinTimeRange[1]);
htDiffg = new TH1F("htDiffg" + suffix, "tDiff = e_t - rdt_t (gated)", (coinTimeRange[1]-coinTimeRange[0]), coinTimeRange[0], coinTimeRange[1]);
htDiffg->SetLineColor(2);
//===================== energy spectrum
hEx = new TH1F("hEx" + suffix, Form("excitation spectrum w/ goodFlag; Ex [MeV] ; Count / %4.0f keV", exRange[0]), (int) (exRange[2]-exRange[1])/exRange[0]*1000, exRange[1], exRange[2]);
TString haha = "Ex (det=%i) w/goodFlag; Ex [MeV]; Count / " +std::to_string(exRange[0]) + "keV";
hExi = new TH1F * [numDet];
hEx_xCal = new TH2F * [numDet];
for(int i = 0; i < numDet; i++ ){
hExi[i] = new TH1F(Form("hExi%d", i) + suffix, haha, (int) (exRange[2]-exRange[1])/exRange[0]*1000, exRange[1], exRange[2]);
hEx_xCal[i] = new TH2F(Form("hEx_xCal%d", i) + suffix,
Form("Ex vs X (ch=%d); X (cm); Ex (MeV)", i),
500, -0.1, 1.1,
(int) (exRange[2]-exRange[1])/exRange[0]*1000, exRange[1], exRange[2]);
}
hExCut1 = new TH1F("hExCut1" + suffix,Form("excitation spectrum w/ goodFlag; Ex [MeV] ; Count / %4.0f keV", exRange[0]), (int) (exRange[2]-exRange[1])/exRange[0]*1000, exRange[1], exRange[2]);
hExCut2 = new TH1F("hExCut2" + suffix,Form("excitation spectrum w/ goodFlag; Ex [MeV] ; Count / %4.0f keV", exRange[0]), (int) (exRange[2]-exRange[1])/exRange[0]*1000, exRange[1], exRange[2]);
hExCut1->SetLineColor(2);
hExCut2->SetLineColor(4);
hEx_ThetaCM = new TH2F("hExThetaCM" + suffix, "Ex vs ThetaCM; ThetaCM [deg]; Ex [MeV]", 200, thetaCMRange[0], thetaCMRange[1], (int) (exRange[2]-exRange[1])/exRange[0]*1000, exRange[1], exRange[2]);
}
//^####################################################### Plot
void MonPlotter::Plot(){
//TODO a more user-friendly way.
//TODO display text on the plot.
for( int i = 1; i <= numPad; i++ ){
canvas->cd(i);
switch (i){
case 1: heCal_z->Draw("colz");break;
case 2: heCal_zGC->Draw("colz");break;
case 3: {
htDiff->Draw("");
htDiffg->Draw("same");
}break;
case 4: hEx->Draw("colz");break;
default:break;
}
}
}
//^#######################################################
void MonPlotter::LoadRDTGate(TString rdtCutFile){
if( rdtCutFile == "" ) return ;
TFile * fCut = new TFile(rdtCutFile);
bool isCutFileOpen = fCut->IsOpen();
if(!isCutFileOpen) {
printf( "Failed to open rdt-cutfile 1 : %s\n" , rdtCutFile.Data());
}else{
cutList = (TObjArray *) fCut->FindObjectAny("cutList");
if( cutList ){
int numCut = cutList->GetEntries();
printf("=========== found %d cutG in %s \n", numCut, fCut->GetName());
for(int i = 0; i < numCut ; i++){
printf("cut name : %s , VarX: %s, VarY: %s, numPoints: %d \n",
cutList->At(i)->GetName(),
((TCutG*)cutList->At(i))->GetVarX(),
((TCutG*)cutList->At(i))->GetVarY(),
((TCutG*)cutList->At(i))->GetN()
);
}
}
}
}
//^#######################################################
void MonPlotter::PlotRaw(bool isLog){
TCanvas * cRawID = new TCanvas("cRawID", Form("Raw e, Ring, xf, xn vs ID | %s", canvasTitle.Data()), 100 + 500 * aID, 100, 1200, 800);
cRawID->Clear(); cRawID->Divide(2,2);
cRawID->cd(1); he_ID->Draw("colz");
cRawID->cd(2); hArrayMulti->Draw();
cRawID->cd(3); hxf_ID->Draw("colz");
cRawID->cd(4); hxn_ID->Draw("colz");
int padSize = 200;
int canvasSize[2] = {padSize * colDet, padSize * rowDet};
TCanvas * cRawE = new TCanvas("cRawE" + suffix,Form("E raw | %s", canvasTitle.Data()), 200 + 500 * aID, 200, canvasSize[0], canvasSize[1]);
cRawE->Clear(); cRawE->Divide(colDet,rowDet);
for (Int_t i=0; i < numDet; i++) {
cRawE->cd(i+1);
cRawE->cd(i+1)->SetGrid();
if( isLog ) cRawE->cd(i+1)->SetLogy();
he[i]->Draw("");
}
TCanvas *cRawXf = new TCanvas("cRawXf" + suffix,Form("Xf raw | %s", canvasTitle.Data()), 300 + 500 * aID, 300, canvasSize[0], canvasSize[1]);
cRawXf->Clear(); cRawXf->Divide(colDet,rowDet);
for (Int_t i=0; i<numDet; i++) {
cRawXf->cd(i+1);
cRawXf->cd(i+1)->SetGrid();
if( isLog ) cRawXf->cd(i+1)->SetLogy();
hxf[i]->Draw("");
}
TCanvas *cRawXn = new TCanvas("cRawXn" + suffix,Form("Xn raw | %s", canvasTitle.Data()), 400 + 500 * aID, 400, canvasSize[0], canvasSize[1]);
cRawXn->Clear();cRawXn->Divide(colDet,rowDet);
for (Int_t i=0; i<numDet; i++) {
cRawXn->cd(i+1);
cRawXn->cd(i+1)->SetGrid();
if( isLog ) cRawXn->cd(i+1)->SetLogy();
hxn[i]->Draw("");
}
TCanvas *cxfxn = new TCanvas("cxfxn" + suffix,Form("XF vs. XN | %s", canvasTitle.Data()), 500 + 500 * aID, 500, canvasSize[0], canvasSize[1]);
cxfxn->Clear(); cxfxn->Divide(colDet,rowDet);
for (Int_t i=0;i<numDet;i++) {
cxfxn->cd(i+1);
cxfxn->cd(i+1)->SetGrid();
hxf_xn[i]->Draw("col");
}
TCanvas *cxfxne = new TCanvas("cxfxne" + suffix,Form("E - XF+XN | %s", canvasTitle.Data()), 600 + 500 * aID, 600, canvasSize[0], canvasSize[1]);
cxfxne->Clear(); cxfxne->Divide(colDet,rowDet);
TLine line(0,0, 4000, 4000); line.SetLineColor(2);
for (Int_t i=0;i<numDet;i++) {
cxfxne->cd(i+1);
cxfxne->cd(i+1)->SetGrid();
he_xs[i]->Draw("col");
line.Draw("same");
}
}
void MonPlotter::PlotCal(){
int padSize = 200;
int canvasSize[2] = {padSize * colDet, padSize * rowDet};
TCanvas *ceVx = new TCanvas("ceVx" + suffix, Form("E vs. X = (xf-xn)/e | %s", canvasTitle.Data()), 100 + 500 * aID, 100, canvasSize[0], canvasSize[1]);
ceVx->Clear(); ceVx->Divide(colDet,rowDet);
for (Int_t i=0;i<numDet;i++) {
ceVx->cd(i+1); he_x[i]->Draw("col");
}
TCanvas *cxfxneC = new TCanvas("cxfxneC" + suffix,Form("Raw E - Corrected XF+XN | %s", canvasTitle.Data()), 200 + 500 * aID, 200, canvasSize[0], canvasSize[1]);
cxfxneC->Clear(); cxfxneC->Divide(colDet,rowDet);
TLine * line = new TLine(0,0, 4000, 4000);
line->SetLineColor(2);
for (Int_t i=0;i<numDet;i++) {
cxfxneC->cd(i+1);
cxfxneC->cd(i+1)->SetGrid();
he_xsCal[i]->Draw("col");
line->Draw("same");
}
TCanvas *cEC = new TCanvas("cEC" + suffix,Form("E corrected | %s", canvasTitle.Data()), 300 + 500 * aID, 300, canvasSize[0], canvasSize[1]);
cEC->Clear();cEC->Divide(colDet,rowDet);
for (Int_t i=0; i<numDet; i++) {
cEC->cd(i+1);
cEC->cd(i+1)->SetGrid();
heCal[i]->Draw("");
}
TCanvas *cEC2 = new TCanvas("cEC2" + suffix,Form("E corrected | %s", canvasTitle.Data()), 400 + 500 * aID, 400, canvasSize[0], canvasSize[1]);
cEC2->Clear();
heCal_ID->Draw("colz");
TCanvas *cxfxnC = new TCanvas("cxfxnC" + suffix,Form("XF vs XN corrected | %s", canvasTitle.Data()), 500 + 500 * aID, 500, canvasSize[0], canvasSize[1]);
cxfxnC->Clear(); cxfxnC->Divide(colDet,rowDet);
for (Int_t i=0;i<numDet;i++) {
cxfxnC->cd(i+1);
cxfxnC->cd(i+1)->SetGrid();
hxfCal_xnCal[i]->Draw("col");
}
}
void MonPlotter::PlotEZ(){
TCanvas *cecalVz = new TCanvas("cevalVz" + suffix,Form("ECALVZ : %s", canvasTitle.Data()),1000, 650);
cecalVz->Clear(); cecalVz->Divide(2,1);
gStyle->SetOptStat("neiou");
cecalVz->cd(1);heCal_z->Draw("col");
cecalVz->cd(2);heCal_zGC->Draw("col");
}
void MonPlotter::PlotEx(){
TCanvas *cExVxCal = new TCanvas("cExVxCal" + suffix,Form("EX | %s", canvasTitle.Data()), 200 + 1000 * aID, 200, 1600,1000);
cExVxCal->Clear();
gStyle->SetOptStat("neiou");
cExVxCal->Divide(colDet,rowDet);
for( int i = 0; i < numDet; i++){
cExVxCal->cd(i+1);
hEx_xCal[i]->SetMarkerStyle(7);
hEx_xCal[i]->Draw();
}
TCanvas *cexI = new TCanvas("cexI" + suffix,Form("EX : %s", canvasTitle.Data()),300 + 1000 * aID, 300, 1600,1000);
cexI->Clear();cexI->Divide(colDet,rowDet);
gStyle->SetOptStat("neiou");
for( int i = 0; i < numDet; i++){
cexI->cd(i+1);
hExi[i]->Draw("");
}
TCanvas *cExThetaCM = new TCanvas("cExThetaCM" + suffix,Form("EX - ThetaCM | %s", canvasTitle.Data()), 400 + 1000 * aID, 400, 650,650);
cExThetaCM->Clear();
gStyle->SetOptStat("neiou");
hEx_ThetaCM->Draw("colz");
TCanvas *cex = new TCanvas("cex" + suffix,Form("EX : %s", canvasTitle.Data()), 500 + 1000 * aID, 500, 1000,650);
cex->Clear();
gStyle->SetOptStat("neiou");
hEx->Draw("");
}
void MonPlotter::PlotRDT(bool isLog){
TCanvas *crdt = new TCanvas("crdt" + suffix,Form("raw RDT | %s", canvasTitle.Data()), 1000, 0, 1000,1000);
crdt->Clear();crdt->Divide(numRDT/4,2);
for( int i = 0; i < numRDT/2; i++){
if( isLog ) crdt->cd(i+1)->SetLogz(); crdt->cd(i+1); hrdt2D[i]->Draw("col");
}
TCanvas *crdtID = new TCanvas("crdtID" + suffix,Form("raw RDT ID | %s", canvasTitle.Data()),1100,1100, 500, 500);
crdtID->Clear();
if( isLog ) crdtID->SetLogz();
hrdt_ID->Draw("colz");
TCanvas *crdtS = new TCanvas("crdtS" + suffix,Form("raw RDT | %s", canvasTitle.Data()),1200, 1200, 1000, 1000);
crdtS->Clear(); crdtS->Divide(2,numRDT/2);
for( int i = 0; i < numRDT; i ++){
crdtS->cd(i+1);
if( isLog ) crdtS->cd(i+1)->SetLogy();
hrdt[i]->Draw("");
}
}
#endif

4
working/DWBA → working/DWBA2
View File

@ -44,7 +44,3 @@
#32Si(t,p)34Si 0 0L=0 0+ 0.000 8MeV/u lA #two-nucleon_transfer #32Si(t,p)34Si 0 0L=0 0+ 0.000 8MeV/u lA #two-nucleon_transfer
#36Ar(d,a)34Cl 0 4L=2 3+ 0.000 8MeV/u As # (d,a) reaction #36Ar(d,a)34Cl 0 4L=2 3+ 0.000 8MeV/u As # (d,a) reaction
30Si(d,p)31Si 0 1s1/2 1/2+ 0.000 10MeV/u AK
# 32Si(d,p)33Si 0 0d5/2 5/2+ 0.197 10MeV/u AK
# 32Si(d,3He)31Al 0 0d5/2 5/2+ 0.000 10MeV/u Ax

0
working/obsolete/DataHoSei.C → working/DataHoSei.C
View File

0
working/obsolete/DataHoSei.h → working/DataHoSei.h
View File

6
working/Ex1.txt Normal file
View File

@ -0,0 +1,6 @@
//Ex relative_xsec SF sigma_in_MeV
//<--- use "//" for line comment
0.000 1.0 1.0 0.0100
//4.400 1.0 1.0 0.0100
//4.600 1.0 1.0 0.0100
#============_End_of_file

6
working/Ex2.txt Normal file
View File

@ -0,0 +1,6 @@
//Ex relative_xsec SF sigma_in_MeV
//<--- use "//" for line comment
0.000 1.0 1.0 0.0100
//4.400 1.0 1.0 0.0100
//4.600 1.0 1.0 0.0100
#============_End_of_file

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