added energy Calibration code

This commit is contained in:
Ryan Tang 2021-12-16 19:36:36 -05:00
parent 15f41e568c
commit b8be1179e8
8 changed files with 452 additions and 154 deletions

235
AnalysisLibrary.h Normal file
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@ -0,0 +1,235 @@
#ifndef Analysis_Library_h
#define Analysis_Library_h
#include <TF1.h>
#include <TGraph.h>
#include <TSpectrum.h>
#include <TMath.h>
#include <iostream>
#include <vector>
#include <string>
std::vector<std::string> SplitStr(std::string tempLine, std::string splitter, int shift = 0){
std::vector<std::string> output;
size_t pos;
do{
pos = tempLine.find(splitter); // fine splitter
if( pos == 0 ){ //check if it is splitter again
tempLine = tempLine.substr(pos+1);
continue;
}
std::string secStr;
if( pos == std::string::npos ){
secStr = tempLine;
}else{
secStr = tempLine.substr(0, pos+shift);
tempLine = tempLine.substr(pos+shift);
}
//check if secStr is begin with space
while( secStr.substr(0, 1) == " "){
secStr = secStr.substr(1);
};
//check if secStr is end with space
while( secStr.back() == ' '){
secStr = secStr.substr(0, secStr.size()-1);
}
output.push_back(secStr);
//printf(" |%s---\n", secStr.c_str());
}while(pos != std::string::npos );
return output;
}
std::vector<std::vector<double>> combination(std::vector<double> arr, int r){
std::vector<std::vector<double>> output;
int n = arr.size();
std::vector<int> v(n);
std::fill(v.begin(), v.begin()+r, 1);
do {
//for( int i = 0; i < n; i++) { printf("%d ", v[i]); }; printf("\n");
std::vector<double> temp;
for (int i = 0; i < n; ++i) {
if (v[i]) {
//printf("%.1f, ", arr[i]);
temp.push_back(arr[i]);
}
}
//printf("\n");
output.push_back(temp);
} while (std::prev_permutation(v.begin(), v.end()));
return output;
}
double* sumMeanVar(std::vector<double> data){
int n = data.size();
double sum = 0;
for( int k = 0; k < n; k++) sum += data[k];
double mean = sum/n;
double var = 0;
for( int k = 0; k < n; k++) var += pow(data[k] - mean,2);
static double output[3];
output[0] = sum;
output[1] = mean;
output[2] = var;
return output;
}
double* fitSlopeIntercept(std::vector<double> dataX, std::vector<double> dataY){
double * smvY = sumMeanVar(dataY);
double sumY = smvY[0];
double meanY = smvY[1];
double * smvX = sumMeanVar(dataX);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
int n = dataX.size();
double sumXY = 0;
for( int j = 0; j < n; j++) sumXY += dataX[j] * dataY[j];
double slope = ( sumXY - sumX * sumY/n ) / varX;
double intercept = meanY - slope * meanX;
static double output[2];
output[0] = slope;
output[1] = intercept;
return output;
}
std::vector<std::vector<double>> FindMatchingPair(std::vector<double> enX, std::vector<double> enY){
//output[0] = fitEnergy;
//output[1] = refEnergy;
int nX = enX.size();
int nY = enY.size();
std::vector<double> fitEnergy;
std::vector<double> refEnergy;
if( nX > nY ){
std::vector<std::vector<double>> output = combination(enX, nY);
double * smvY = sumMeanVar(enY);
double sumY = smvY[0];
double meanY = smvY[1];
double varY = smvY[2];
double optRSquared = 0;
double absRSqMinusOne = 1;
int maxID = 0;
for( int k = 0; k < (int) output.size(); k++){
double * smvX = sumMeanVar(output[k]);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
double sumXY = 0;
for( int j = 0; j < nY; j++) sumXY += output[k][j] * enY[j];
double rSq = abs(sumXY - sumX*sumY/nY)/sqrt(varX*varY);
//for( int j = 0; j < nY ; j++){ printf("%.1f, ", output[k][j]); }; printf("| %.10f\n", rSq);
if( abs(rSq-1) < absRSqMinusOne ) {
absRSqMinusOne = abs(rSq-1);
optRSquared = rSq;
maxID = k;
}
}
fitEnergy = output[maxID];
refEnergy = enY;
printf(" R^2 : %.20f\n", optRSquared);
//calculation fitting coefficient
//double * si = fitSlopeIntercept(fitEnergy, refEnergy);
//printf( " y = %.4f x + %.4f\n", si[0], si[1]);
}else if( nX < nY ){
std::vector<std::vector<double>> output = combination(enY, nX);
double * smvX = sumMeanVar(enX);
double sumX = smvX[0];
double meanX = smvX[1];
double varX = smvX[2];
double optRSquared = 0;
double absRSqMinusOne = 1;
int maxID = 0;
for( int k = 0; k < (int) output.size(); k++){
double * smvY = sumMeanVar(output[k]);
double sumY = smvY[0];
double meanY = smvY[1];
double varY = smvY[2];
double sumXY = 0;
for( int j = 0; j < nX; j++) sumXY += output[k][j] * enX[j];
double rSq = abs(sumXY - sumX*sumY/nX)/sqrt(varX*varY);
//for( int j = 0; j < nX ; j++){ printf("%.1f, ", output[k][j]); }; printf("| %.10f\n", rSq);
if( abs(rSq-1) < absRSqMinusOne ) {
absRSqMinusOne = abs(rSq-1);
optRSquared = rSq;
maxID = k;
}
}
fitEnergy = enX;
refEnergy = output[maxID];
printf(" R^2 : %.20f\n", optRSquared);
}else{
fitEnergy = enX;
refEnergy = enY;
//if nX == nY, ther could be cases that only partial enX and enY are matched.
}
printf("fitEnergy = ");for( int k = 0; k < (int) fitEnergy.size() ; k++){ printf("%7.2f, ", fitEnergy[k]); }; printf("\n");
printf("refEnergy = ");for( int k = 0; k < (int) refEnergy.size() ; k++){ printf("%7.2f, ", refEnergy[k]); }; printf("\n");
std::vector<std::vector<double>> haha;
haha.push_back(fitEnergy);
haha.push_back(refEnergy);
return haha;
}
#endif

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@ -11,12 +11,12 @@
//############################################ User setting
int rawEnergyRange[2] = {100, 6000}; // in ch
int rawEnergyRange[2] = {500, 6000}; // in ch
int energyRange[3] = {1, 100, 2000}; // keV {resol, min, max}
double BGO_threshold = 100; // in ch
TString e_corr = "e_corr.txt";
TString e_corr = "correction_e.dat";
//############################################ end of user setting
@ -30,15 +30,15 @@ vector<vector<double>> eCorr;
//############################################ histogram declaration
TH2F * heVID;
TH1F * he[NCLOVER];
TH1F * he[NCRYSTAL];
TH2F * hgg[NCLOVER][NCLOVER];
TH2F * hgg[NCRYSTAL][NCRYSTAL];
TH2F * hcoin;
///----- after calibration and BGO veto
TH2F * heCalVID;
TH1F * heCal[NCLOVER];
TH1F * heCal[NCRYSTAL];
TH2F * hcoinBGO;
void Analyzer::Begin(TTree * tree){
@ -49,23 +49,23 @@ void Analyzer::Begin(TTree * tree){
printf("======================== Histograms declaration\n");
heVID = new TH2F("heVID", "e vs ID; det ID; e [ch]", NCLOVER, 0, NCLOVER, rawEnergyRange[1] - rawEnergyRange[0], rawEnergyRange[0], rawEnergyRange[1]);
heCalVID = new TH2F("heCalVID", Form("eCal vs ID (BGO veto > %.1f); det ID; e [ch]", BGO_threshold), NCLOVER, 0, NCLOVER, rawEnergyRange[1] - rawEnergyRange[0], rawEnergyRange[0], rawEnergyRange[1]);
for( int i = 0; i < NCLOVER; i ++){
heVID = new TH2F("heVID", "e vs ID; det ID; e [ch]", NCRYSTAL, 0, NCRYSTAL, rawEnergyRange[1] - rawEnergyRange[0], rawEnergyRange[0], rawEnergyRange[1]);
heCalVID = new TH2F("heCalVID", Form("eCal vs ID (BGO veto > %.1f); det ID; Energy [keV]", BGO_threshold), NCRYSTAL, 0, NCRYSTAL, (energyRange[2] - energyRange[1])/energyRange[0], energyRange[1], energyRange[2]);
for( int i = 0; i < NCRYSTAL; i ++){
he[i] = new TH1F( Form("he%02d", i), Form("e -%02d", i), rawEnergyRange[1] - rawEnergyRange[0], rawEnergyRange[0], rawEnergyRange[1]);
heCal[i] = new TH1F(Form("heCal%02d", i), Form("e -%02d (BGO veto > %.1f)", i, BGO_threshold), rawEnergyRange[1] - rawEnergyRange[0], rawEnergyRange[0], rawEnergyRange[1]);
heCal[i] = new TH1F(Form("heCal%02d", i), Form("eCal -%02d (BGO veto > %.1f); Energy [keV]; count / %d keV", i, BGO_threshold, energyRange[0]), (energyRange[2] - energyRange[1])/energyRange[0], energyRange[1], energyRange[2]);
}
for( int i = 0; i < NCLOVER; i++){
for( int j = i+1; j < NCLOVER; j++){
for( int i = 0; i < NCRYSTAL; i++){
for( int j = i+1; j < NCRYSTAL; j++){
//hgg[i][j] = new TH2F(Form("hgg%02d%02d", i, j), Form("e%02d vs e%02d; e%02d; e%02d", i, j, i, j),
// (rawEnergyRange[1] - rawEnergyRange[0])/2, rawEnergyRange[0], rawEnergyRange[1],
// (rawEnergyRange[1] - rawEnergyRange[0])/2, rawEnergyRange[0], rawEnergyRange[1]);
}
}
hcoin = new TH2F("hcoin", "detector coin.; det ID; det ID", NCLOVER, 0, NCLOVER, NCLOVER, 0 , NCLOVER);
hcoinBGO = new TH2F("hcoinBGO", Form("detector coin. (BGO veto > %.1f); det ID; det ID", BGO_threshold), NCLOVER, 0, NCLOVER, NCLOVER, 0 , NCLOVER);
hcoin = new TH2F("hcoin", "detector coin.; det ID; det ID", NCRYSTAL, 0, NCRYSTAL, NCRYSTAL, 0 , NCRYSTAL);
hcoinBGO = new TH2F("hcoinBGO", Form("detector coin. (BGO veto > %.1f); det ID; det ID", BGO_threshold), NCRYSTAL, 0, NCRYSTAL, NCRYSTAL, 0 , NCRYSTAL);
printf("======================== End of histograms declaration\n");
@ -102,7 +102,7 @@ Bool_t Analyzer::Process(Long64_t entry){
if( multi == 0 ) return kTRUE;
///=========== Looping Crystals
for( int detID = 0; detID < NCLOVER ; detID ++){
for( int detID = 0; detID < NCRYSTAL ; detID ++){
//======== baics gate when no energy or pileup
if( TMath::IsNaN(e[detID])) continue;
@ -113,7 +113,7 @@ Bool_t Analyzer::Process(Long64_t entry){
he[detID]->Fill(e[detID]);
for( int detJ = detID +1; detJ < NCLOVER; detJ++) {
for( int detJ = detID +1; detJ < NCRYSTAL; detJ++) {
if( TMath::IsNaN(e[detJ])) continue;
//hgg[detID][detJ]->Fill(e[detID], e[detJ]); // x then y
hcoin->Fill(detID, detJ);
@ -139,7 +139,7 @@ Bool_t Analyzer::Process(Long64_t entry){
heCalVID->Fill( detID, eCal);
heCal[detID]->Fill(eCal);
for( int detJ = detID +1; detJ < NCLOVER; detJ++) {
for( int detJ = detID +1; detJ < NCRYSTAL; detJ++) {
if( TMath::IsNaN(e[detJ])) continue;
hcoinBGO->Fill(detID, detJ);
}
@ -178,12 +178,13 @@ void Analyzer::Terminate(){
cCanvas->cd(4)->SetLogz(1);
hcoinBGO->Draw("colz");
printf("=============== loaded AutoFit.C, try showFitMethos()\n");
gROOT->ProcessLine(".L AutoFit.C");
printf("=============== Analyzer Utility\n");
gROOT->ProcessLine(".L Analyzer_Utili.c");
gROOT->ProcessLine("listDraws()");
printf("=============== loaded AutoFit.C\n");
gROOT->ProcessLine(".L AutoFit.C");
}

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@ -15,6 +15,7 @@
#include <TSelector.h>
#include "mapping.h"
#include "AnalysisLibrary.h"
// Header file for the classes stored in the TTree if any.
@ -26,9 +27,9 @@ public :
// Declaration of leaf types
ULong64_t evID;
Double_t e[NCLOVER];
ULong64_t t[NCLOVER];
UShort_t p[NCLOVER];
Double_t e[NCRYSTAL];
ULong64_t t[NCRYSTAL];
UShort_t p[NCRYSTAL];
Double_t bgo[NBGO];
Double_t other[NOTHER];
Int_t multi;
@ -112,49 +113,9 @@ void Analyzer::SlaveTerminate(){
}
std::vector<std::string> SplitStr(std::string tempLine, std::string splitter, int shift = 0){
std::vector<std::string> output;
size_t pos;
do{
pos = tempLine.find(splitter); /// fine splitter
if( pos == 0 ){ ///check if it is splitter again
tempLine = tempLine.substr(pos+1);
continue;
}
std::string secStr;
if( pos == std::string::npos ){
secStr = tempLine;
}else{
secStr = tempLine.substr(0, pos+shift);
tempLine = tempLine.substr(pos+shift);
}
///check if secStr is begin with space
while( secStr.substr(0, 1) == " "){
secStr = secStr.substr(1);
};
///check if secStr is end with space
while( secStr.back() == ' '){
secStr = secStr.substr(0, secStr.size()-1);
}
output.push_back(secStr);
//printf(" |%s---\n", secStr.c_str());
}while(pos != std::string::npos );
return output;
}
std::vector<std::vector<double>> LoadCorrectionParameters(TString corrFile){
printf("==================== load correction parameters : %s", corrFile.Data());
printf(" load correction parameters : %s", corrFile.Data());
std::ifstream file;
file.open(corrFile.Data());
@ -192,13 +153,17 @@ std::vector<std::vector<double>> LoadCorrectionParameters(TString corrFile){
printf("det : %2d | ", i );
int len = (int) corr[i].size();
for( int j = 0; j < len - 1 ; j++){
printf("%6.2f, ", corr[i][j]);
printf("%14.6f, ", corr[i][j]);
}
printf("%6.2f\n", corr[i][len-1]);
printf("%14.6f\n", corr[i][len-1]);
}
}else{
printf(".... fail\n");
std::vector<double> temp = {0, 1};
for( int i = 0; i < NCRYSTAL; i++){
corr.push_back(temp);
}
}
return corr;

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@ -2,9 +2,11 @@ void listDraws(void) {
printf("------------------- List of Plots -------------------\n");
printf(" newCanvas() - Create a new Canvas\n");
printf("-----------------------------------------------------\n");
printf(" rawEvID() - Raw e vs ID\n");
printf(" drawE() - Raw e for all %d detectors\n", NCLOVER);
//printf(" drawGG() - Gamma - Gamma Coincident for all %d detectors\n", NCLOVER);
printf(" rawEvID() - e vs ID\n");
printf(" drawE() - e for all %d detectors\n", NCRYSTAL);
//printf(" drawGG() - Gamma - Gamma Coincident for all %d detectors\n", NCRYSTAL);
printf("-----------------------------------------------------\n");
printf(" energyCalibration() - Calibrate energy \n");
printf("-----------------------------------------------------\n");
}
@ -16,58 +18,85 @@ void newCanvas(int sizeX = 800, int sizeY = 600, int posX = 0, int posY = 0){
cNewCanvas->cd();
}
void rawEvID(){
void rawEvID(bool cal = false){
TCanvas * cRawID = (TCanvas *) gROOT->FindObjectAny("cRawID");
if( cRawID == NULL ) cRawID = new TCanvas("cRawID", "raw ID", 1000, 800);
cRawID->cd(1)->SetGrid();
heVID->Draw("colz");
cal ? heCalVID->Draw("colz") : heVID->Draw("colz");
}
void drawE(bool isLogy = false, bool cali = false){
void drawE(int CloverID = -1, bool cali = false, bool isLogy = false, double xMin = 0, double xMax = 0){
int nCrystal = 4;
int numCol = NCLOVER / nCrystal;
int nCrystalPerClover = 4;
int nClover = NCRYSTAL / nCrystalPerClover;
if( CloverID >= nClover ) {
printf("Clover-ID > nClover = %d. \n", nClover);
return;
}
int size = 300;
TCanvas *cRawE = (TCanvas *) gROOT->FindObjectAny("cRawE");
if( cRawE == NULL ) cRawE = new TCanvas("cRawE", cali ? "Cal e" : "Raw e", size * numCol, size * nCrystal);
cRawE->Clear();cRawE->Divide(numCol, 4, 0);
if( cRawE == NULL ) cRawE = new TCanvas("cRawE", cali ? "Cal e" : "Raw e", size * nClover, size * nCrystalPerClover);
cRawE->Clear();
if( CloverID >= 0 ) nClover = 1;
cRawE->Divide(nClover, nCrystalPerClover, 0);
for (Int_t i = 0; i < nCrystal; i++) {
for( Int_t j = 0; j < numCol; j++){
int canvasID = numCol * i + j + 1;
///find max y
double maxY = 0;
int nDet = nClover*nCrystalPerClover;
for( int i = (CloverID < 0 ? 0 : nCrystalPerClover*CloverID) ; i < (CloverID < 0 ? nDet : nCrystalPerClover*CloverID + nDet) ; i++){
int mBin = cali ? heCal[i]->GetMaximumBin() : he[i]->GetMaximumBin();
double max = cali ? heCal[i]->GetBinContent(mBin) : he[i]->GetBinContent(mBin);
if( max > maxY ) maxY = max;
}
maxY = maxY * 1.1;
///printf("max Y : %f \n", maxY);
for (Int_t i = 0; i < nClover; i++) {
for( Int_t j = 0; j < nCrystalPerClover; j++){
int canvasID = CloverID < 0 ? nClover*j+ i + 1 : j + 1;
cRawE->cd(canvasID);
cRawE->cd(canvasID)->SetGrid();
cRawE->cd(canvasID)->SetTickx(2);
cRawE->cd(canvasID)->SetTicky(2);
cRawE->cd(canvasID)->SetBottomMargin(0.06);
if ( i == nClover -1 ) cRawE->cd(canvasID)->SetRightMargin(0.002);
if( isLogy ) cRawE->cd(canvasID)->SetLogy();
int hID = nCrystal*j+ i;
int hID = CloverID < 0 ? nCrystalPerClover*i+ j : nCrystalPerClover * CloverID + j ;
if( cali ) {
if ( xMin != 0 || xMax != 0 ) heCal[hID]->GetXaxis()->SetRangeUser(xMin, xMax);
heCal[hID]->SetMaximum(maxY);
heCal[hID]->Draw("");
}else{
if ( xMin != 0 || xMax != 0 ) he[hID]->GetXaxis()->SetRangeUser(xMin, xMax);
he[hID]->SetMaximum(maxY);
he[hID]->Draw("");
}
}
}
cRawE->SetCrosshair(1);
}
/**
void drawGG(){
int nCrystal = 4;
int numCol = NCLOVER / nCrystal;
int numCol = NCRYSTAL / nCrystal;
int size = 300;
TCanvas *cGG = (TCanvas *) gROOT->FindObjectAny("cGG");
if( cGG == NULL ) cGG = new TCanvas("cGG", "Gamma - Gamma Coin.", size * NCLOVER, size * NCLOVER);
cGG->Clear();cGG->Divide(NCLOVER, NCLOVER);
if( cGG == NULL ) cGG = new TCanvas("cGG", "Gamma - Gamma Coin.", size * NCRYSTAL, size * NCRYSTAL);
cGG->Clear();cGG->Divide(NCRYSTAL, NCRYSTAL);
for( int i = 0; i < NCLOVER; i ++){
for( int j = i+1; j < NCLOVER; j ++){
cGG->cd( NCLOVER * i + j +1 );
for( int i = 0; i < NCRYSTAL; i ++){
for( int j = i+1; j < NCRYSTAL; j ++){
cGG->cd( NCRYSTAL * i + j +1 );
hgg[i][j]->Draw("colz");
}
}
@ -75,10 +104,70 @@ void drawGG(){
}
*/
void energyCalibration(int detID = -1, int BG = 10, double threshold = 0.1, double sigmaMax = 5, int peakDensity = 10){
void energyCalibration(){
// TCanvas
TCanvas *cCal = (TCanvas *) gROOT->FindObjectAny("cCal");
if( cCal == NULL ) cCal = new TCanvas("cCal", "Energy Calibration", 1000, 0, 1000, 600);
cCal->Clear();
cCal->Divide(2,1);
cCal->SetGrid();
vector<double> refEnergy = {121.738,
244.699,
344.281,
411.115,
443.965,
778.903,
867.390,
964.055,
1085.842,
1089.700,
1112.087,
1408.022};
double a0[NCRYSTAL];
double a1[NCRYSTAL];
for( int i = 0 ; i < NCRYSTAL; i++){
if( detID >= 0 && i != detID ) continue;
cCal->cd(1);
he[i]->Draw();
vector<double> peaks = fitAuto(he[i], BG, threshold, sigmaMax, peakDensity);
vector<vector<double>> output = FindMatchingPair(peaks, refEnergy);
vector<double> haha1 = output[0];
vector<double> haha2 = output[1];
TGraph * graph = new TGraph(haha1.size(), &haha1[0], &haha2[0] );
cCal->cd(2);
graph->Draw("A*");
TF1 * fit = new TF1("fit", "pol1" );
graph->Fit("fit", "");
a0[i] = fit->GetParameter(0);
a1[i] = fit->GetParameter(1);
if( detID < 0 ) {
printf("%2d | a0: %14.10f, a1: %14.10f\n", i, a0[i], a1[i]);
}else{
printf("%2d | a0, a1 = %14.10f\t%14.10f\n", i, a0[i], a1[i]);
}
}
if( detID < 0 ){
FILE * paraOut;
TString filename;
filename.Form("correction_e_auto.dat");
paraOut = fopen (filename.Data(), "w+");
printf("=========== save e-correction parameters to %s \n", filename.Data());
for( int i = 0; i < NCRYSTAL; i++){
fprintf(paraOut, "%14.10f\t%14.10f\n", a0[i], a1[i]);
}
fflush(paraOut);
fclose(paraOut);
}
}

36
correction_e.dat Normal file
View File

@ -0,0 +1,36 @@
-0.11851105 0.73602844
-0.05329699 0.30617141
0.21919925 0.30256406
0.19549630 0.29988911
0.23576185 0.31232252
0.15862498 0.31719203
0.17456490 0.30495670
0.07937138 0.31393499
-0.17752085 0.30734768
0.47543250 0.30864178
0.08375230 0.30843852
0.28037171 0.31263324
-0.04410183 0.74143159
0.07905962 0.73641543
-0.05892825 0.71786084
0.07476386 0.36785529
0.07951184 0.26260823
0.02161385 0.25884364
0.25371149 0.29681333
0.23290589 0.34255969
0.20677949 0.30504413
0.16341696 0.30761409
0.04406586 0.30595347
0.07292338 0.30758425
0.00136881 0.17925931
0.23758200 0.31520725
-0.47281914 0.17676788
0.04230014 0.17917457
0.20654489 0.30340233
0.20762807 0.30960594
0.19673688 0.30110502
0.07362825 0.29715807
0.17023147 0.30259114
0.23642061 0.29846387
0.15627111 0.31411607
-0.01255732 0.15930220

36
correction_e_auto.dat Normal file
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@ -0,0 +1,36 @@
-0.11851105 0.73602844
-0.00614413 0.30614471
0.24650404 0.30255455
0.11051358 0.29991329
0.25582558 0.31231509
0.17781452 0.31718544
0.16689634 0.30496368
0.03831077 0.31393841
-0.14623990 0.30734342
0.35972740 0.30867079
0.10284998 0.30843610
0.23571282 0.31264887
-0.04410183 0.74143159
0.07905962 0.73641543
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@ -1,64 +0,0 @@
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@ -7,7 +7,7 @@ Other : 200 - 299
//==================== mapping
#define NCLOVER 36
#define NCRYSTAL 36
#define NBGO 9
#define NOTHER 52