bugs fixed, add correction parameter loading

Analyzer.C

@@ -12,10 +12,12 @@
 //############################################ User setting
 
 int rawEnergyRange[2] = {100,  6000}; // in ch
-int energyRange[2] = {100, 2000}; // keV
+int energyRange[3] = {1, 100, 2000}; // keV {resol, min, max}
 
 double BGO_threshold = 100; // in ch
 
+TString e_corr = "e_corr.txt";
+
 //############################################ end of user setting
 
 ULong64_t NumEntries = 0;
@@ -23,13 +25,13 @@ ULong64_t ProcessedEntries = 0;
 Float_t Frac = 0.1; ///Progress bar
 TStopwatch StpWatch;
 
+vector<vector<double>> eCorr;
+
 //############################################ histogram declaration
 
 TH2F * heVID;
 TH1F * he[NCLOVER];
 
-TH1F * h1, * h2;
-
 TH2F * hgg[NCLOVER][NCLOVER];
 
 TH2F * hcoin;
@@ -45,10 +47,7 @@ void Analyzer::Begin(TTree * tree){
 
    NumEntries = tree->GetEntries();
 
-   printf("======================== histogram declaration\n");
+   printf("======================== Histograms declaration\n");
-
-   h1 = new TH1F("h1", "h1", 1900, 100, 2000);
-   h2 = new TH1F("h2", "h2 BGO gated", 1900, 100, 2000);
    
    heVID    = new TH2F("heVID",                                              "e vs ID; det ID; e [ch]", NCLOVER, 0, NCLOVER, rawEnergyRange[1] - rawEnergyRange[0], rawEnergyRange[0], rawEnergyRange[1]);
    heCalVID = new TH2F("heCalVID", Form("eCal vs ID (BGO veto > %.1f); det ID; e [ch]", BGO_threshold), NCLOVER, 0, NCLOVER, rawEnergyRange[1] - rawEnergyRange[0], rawEnergyRange[0], rawEnergyRange[1]);
@@ -59,17 +58,23 @@ void Analyzer::Begin(TTree * tree){
    
    for( int i = 0; i < NCLOVER; i++){
       for( int j = i+1; j < NCLOVER; j++){
-         hgg[i][j] = new TH2F(Form("hgg%02d%02d", i, j), Form("e%02d vs e%02d; e%02d; e%02d", i, j, i, j), 
+         //hgg[i][j] = new TH2F(Form("hgg%02d%02d", i, j), Form("e%02d vs e%02d; e%02d; e%02d", i, j, i, j), 
-                 (rawEnergyRange[1] - rawEnergyRange[0])/2, rawEnergyRange[0], rawEnergyRange[1], 
+         //        (rawEnergyRange[1] - rawEnergyRange[0])/2, rawEnergyRange[0], rawEnergyRange[1], 
-                 (rawEnergyRange[1] - rawEnergyRange[0])/2, rawEnergyRange[0], rawEnergyRange[1]);
+         //        (rawEnergyRange[1] - rawEnergyRange[0])/2, rawEnergyRange[0], rawEnergyRange[1]);
       }
    }
    
    hcoin = new TH2F("hcoin", "detector coin.; det ID; det ID", NCLOVER, 0, NCLOVER, NCLOVER, 0 , NCLOVER); 
    hcoinBGO = new TH2F("hcoinBGO", Form("detector coin. (BGO veto > %.1f); det ID; det ID", BGO_threshold), NCLOVER, 0, NCLOVER, NCLOVER, 0 , NCLOVER); 
    
-   printf("======================== End of histograms Declaration\n");
+   printf("======================== End of histograms declaration\n");
+   
+   printf("======================== Load parameters.\n");
+   
+   eCorr = LoadCorrectionParameters(e_corr); 
+   
    StpWatch.Start();
+   printf("======================== Start processing....\n");
 
 }
 
@@ -105,30 +110,12 @@ Bool_t Analyzer::Process(Long64_t entry){
       
       //======== Fill raw data
       heVID->Fill( detID, e[detID]);
-
       he[detID]->Fill(e[detID]);
-
-      if( 8 == detID ) {
-	h1->Fill( e[detID]*0.307484 - 0.505163 );
-	heCal[detID]->Fill( e[detID]*0.307484 - 0.505163 );
-      }
-      if( 9 == detID ) {
-	h1->Fill( e[detID]*0.308628 + 0.672629 );
-	heCal[detID]->Fill( e[detID]*0.308628 + 0.672629 );
-      }
-      if( 10 == detID ) {
-	h1->Fill( e[detID]*0.308445 + 0.238095 );
-	heCal[detID]->Fill( e[detID]*0.308445 + 0.238095 );
-      }
-      if( 11 == detID ) {
-	h1->Fill( e[detID]*0.312665 + 0.359117 );
-	heCal[detID]->Fill( e[detID]*0.312665 + 0.359117 );
-      }
       
       
       for( int detJ = detID +1; detJ < NCLOVER; detJ++) {
          if( TMath::IsNaN(e[detJ])) continue;
-         hgg[detID][detJ]->Fill(e[detID], e[detJ]); // x then y
+         //hgg[detID][detJ]->Fill(e[detID], e[detJ]); // x then y
          hcoin->Fill(detID, detJ); 
       }
       
@@ -139,21 +126,13 @@ Bool_t Analyzer::Process(Long64_t entry){
             return kTRUE;
          }
       }
-
+   
-
-      
-      if(  8 == detID ) h2->Fill( e[detID]*0.307484 - 0.505163 );
-      if(  9 == detID ) h2->Fill( e[detID]*0.308628 + 0.672629 );
-      if( 10 == detID ) h2->Fill( e[detID]*0.308445 + 0.238095 );
-      if( 11 == detID ) h2->Fill( e[detID]*0.312665 + 0.359117 );
-
-      
       
       //========= apply correction
       double eCal = e[detID];
       
       heCalVID->Fill( detID, eCal);
-      //heCal[detID]->Fill(eCal);
+      heCal[detID]->Fill(eCal);
       
       for( int detJ = detID +1; detJ < NCLOVER; detJ++) {
          if( TMath::IsNaN(e[detJ])) continue;
@@ -187,22 +166,16 @@ void Analyzer::Terminate(){
    heCalVID->Draw("colz");
    
    cCanvas->cd(3);
-   //cCanvas->cd(3)->SetLogz(1);
+   cCanvas->cd(3)->SetLogz(1);
-   //hcoin->Draw("colz");
+   hcoin->Draw("colz");
-   h1->Draw("");
-   heCal[8]->SetLineColor(2);heCal[8]->Draw("same");
-   heCal[9]->SetLineColor(4);heCal[9]->Draw("same");
-   heCal[10]->SetLineColor(6);heCal[10]->Draw("same");
-   heCal[11]->SetLineColor(7);heCal[11]->Draw("same");
    
    cCanvas->cd(4);
-   //cCanvas->cd(4)->SetLogz(1);
+   cCanvas->cd(4)->SetLogz(1);
-   //hcoinBGO->Draw("colz");
+   hcoinBGO->Draw("colz");
-   h2->Draw("");
    
    printf("=============== Analyzer Utility\n");
-   gROOT->ProcessLine(".L Analyzer_Utilt.c");
+   gROOT->ProcessLine(".L Analyzer_Utili.c");
-   //gROOT->ProcessLine("listDraws()");
+   gROOT->ProcessLine("listDraws()");
    
    printf("=============== loaded AutoFit.C\n");
    gROOT->ProcessLine(".L AutoFit.C");

Analyzer.h

@@ -8,6 +8,7 @@
 #ifndef Analyzer_h
 #define Analyzer_h
 
+#include <fstream>
 #include <TROOT.h>
 #include <TChain.h>
 #include <TFile.h>
@@ -112,4 +113,97 @@ void Analyzer::SlaveTerminate(){
 }
 
 
+
+std::vector<std::string> SplitStr(std::string tempLine, std::string splitter, int shift = 0){
+
+  std::vector<std::string> output;
+
+  size_t pos;
+  do{
+    pos = tempLine.find(splitter); /// fine splitter
+    if( pos == 0 ){ ///check if it is splitter again
+      tempLine = tempLine.substr(pos+1);
+      continue;
+    }
+
+    std::string secStr;
+    if( pos == std::string::npos ){
+      secStr = tempLine;
+    }else{
+      secStr = tempLine.substr(0, pos+shift);
+      tempLine = tempLine.substr(pos+shift);
+    }
+
+    ///check if secStr is begin with space
+    while( secStr.substr(0, 1) == " "){
+      secStr = secStr.substr(1);
+    };
+    
+    ///check if secStr is end with space
+    while( secStr.back() == ' '){
+      secStr = secStr.substr(0, secStr.size()-1);
+    }
+
+    output.push_back(secStr);
+    //printf(" |%s---\n", secStr.c_str());
+    
+  }while(pos != std::string::npos );
+
+  return output;
+}
+
+std::vector<std::vector<double>> LoadCorrectionParameters(TString corrFile){
+
+  printf("==================== load correction parameters : %s", corrFile.Data());
+  std::ifstream file;
+  file.open(corrFile.Data());
+  
+  std::vector<std::vector<double>> corr;
+  corr.clear();
+  
+  std::vector<double> detCorr;
+  detCorr.clear();
+  
+  if( file.is_open() ){  
+    
+    while( file.good() ){
+    
+      std::string line;
+      getline(file, line);
+    
+      if( line.substr(0,1) == "#" ) continue;
+      if( line.substr(0,2) == "//" ) continue;
+      if( line.size() == 0 ) continue;
+      
+      std::vector<std::string> temp = SplitStr(line, " ");
+      
+      detCorr.clear();
+      for( int i = 0; i < (int) temp.size() ; i++){
+        detCorr.push_back(std::stod(temp[i]));
+      }
+      corr.push_back(detCorr);
+    }
+    
+    file.close();
+    
+    printf(".... done\n");
+    printf("===== correction parameters \n");
+    for( int i = 0; i < (int) corr.size(); i++){
+      printf("det : %2d | ", i );
+      int len = (int) corr[i].size();
+      for( int j = 0; j < len - 1 ; j++){
+        printf("%6.2f, ", corr[i][j]);
+      }
+      printf("%6.2f\n", corr[i][len-1]);
+    }
+  
+  }else{
+    printf(".... fail\n");
+  }
+  
+  return corr;
+}
+
+
+
 #endif // #ifdef Analyzer_cxx

Analyzer_Utili.c

@@ -4,7 +4,7 @@ void listDraws(void) {
   printf("-----------------------------------------------------\n");
   printf("    rawEvID() - Raw e vs ID\n");
   printf("      drawE() - Raw e for all %d detectors\n", NCLOVER);
-  printf("     drawGG() - Gamma - Gamma Coincident for all %d detectors\n", NCLOVER);
+  //printf("     drawGG() - Gamma - Gamma Coincident for all %d detectors\n", NCLOVER);
   printf("-----------------------------------------------------\n");
 }
 
@@ -32,25 +32,15 @@ void drawE(bool isLogy = false, bool cali = false){
 
    TCanvas *cRawE = (TCanvas *) gROOT->FindObjectAny("cRawE");
    if( cRawE == NULL ) cRawE = new TCanvas("cRawE", cali ? "Cal e" : "Raw e", size * numCol, size * nCrystal);
-   cRawE->Clear();cRawE->Divide(numCol, 4);
+   cRawE->Clear();cRawE->Divide(numCol, 4, 0);
-   
+
-   //cRawE->SetRightMargin(0);
-   //cRawE->SetLeftMargin(0);
-   //cRawE->SetTopMargin(0);
-   //cRawE->SetBottomMargin(0);
-   //cRawE->SetTicks(1,1);
-   //cRawE->SetBorderMode(1);
-   
    for (Int_t i = 0; i < nCrystal; i++) {
       for( Int_t j = 0; j < numCol; j++){
          int canvasID = numCol * i + j + 1;
          cRawE->cd(canvasID); 
          cRawE->cd(canvasID)->SetGrid();       
-         cRawE->cd(canvasID)->SetRightMargin(0.1);
+         cRawE->cd(canvasID)->SetTickx(2);   
-         //cRawE->cd(canvasID)->SetLeftMargin(0);
+         cRawE->cd(canvasID)->SetTicky(2);   
-         cRawE->cd(canvasID)->SetTopMargin(0);
-         //cRawE->cd(canvasID)->SetBottomMargin(0);  
-         //cRawE->cd(canvasID)->SetBorderMode(1);  
          if( isLogy ) cRawE->cd(canvasID)->SetLogy();
          int hID = nCrystal*j+ i;
          if( cali ) {
@@ -63,6 +53,7 @@ void drawE(bool isLogy = false, bool cali = false){
 
 }
 
+/**
 void drawGG(){
 
    int nCrystal = 4;
@@ -81,4 +72,13 @@ void drawGG(){
       }
    }
    
+}
+*/
+
+
+void energyCalibration(){
+//   TCanvas 
+   
+   
+   
 }

AutoFit.C

@@ -1,3 +1,12 @@
+/************************************************************
+#
+#  Created by Tsz Leung (Ryan) Tang
+#  goluckyryan@gmail.com
+#  rtang@fsu.edu
+#
+*************************************************************/
+
+
 #ifndef AutoFit_C
 #define AutoFit_C
 
@@ -8,7 +17,7 @@
 #include <TMath.h>
 #include <vector>
 
-void ShowFitMethod(){
+void showFitMethod(){
   printf("----------------------- Method of Fitting ---------------\n");
   printf("---------------------------------------------------------\n");
   printf("         fitAuto() - estimate BG, find peak, and fit n-Gauss \n");

ChainAnalysis.C

@@ -4,9 +4,16 @@ void ChainAnalysis(){
 
   TChain * chain = new TChain("tree");
 
-  chain->Add("Dec15-07-00[0-9].root");
+  /******************/
 
+  //chain->Add("Dec15-07-00[0-9].root");
+
+  chain->Add("ti74pt7a-*.root");
+
+  /******************/
+  printf("\033[31m");
   chain->GetListOfFiles()->Print();
+  printf("\033[m");
   chain->Process("Analyzer.C+");
 
 

process_run

@@ -1,5 +1,9 @@
 #1/bin/bash
 
+DIR=$(pwd)
+DATA_DIR=fsu_run_2021
+sortTime=$DIR/$DATA_DIR/pxi-time-order
+
 if [ $# -eq 0 ] || [ $1 == "-help"  ]; then
   echo "$./process_run [Run Folder] [Time Sort] [EventBuild] [Analysis]"
   echo "     Run Folder = the name of run folder"
@@ -17,9 +21,6 @@ if [ $# -gt 1 ]; then TimeSort=$2; fi
 EventBuild=1
 if [ $# -gt 2 ]; then EventBuild=$3; fi
 
-DIR=$(pwd)
-DATA_DIR=fsu_run_2021
-
 RED='\033[1;31m'
 YELLOW='\033[1;33m'
 ORANGE='\033[0;33m'
@@ -34,6 +35,8 @@ cd $DATA_DIR/$RunFolder
 fileList=$(ls *.evt)
 numFile=$(ls -lhtr *.evt | wc -l)
 count=0
+
+
 cd $DIR
 
 for a in $fileList 
@@ -47,21 +50,24 @@ do
 
   if [ $TimeSort -eq 1 ]; then
     evtDateTime=`stat -c "%Z"  $DATA_DIR/$RunFolder/$a | sort -rn | head -1`  
-    istoExist=`ls -1 $a.to | wc -l`
+    istoExist=`ls -1 $a.to 2> /dev/null | wc -l`
     if [ ${istoExist} -gt 0 ]; then
-      echo "found $a.to"
+      echo "--- found $a.to"
       toDateTime=`stat -c "%Z"  $a.to | sort -rn | head -1`  
       if [ ${evtDateTime} -ge ${toDateTime} ]; then
-        $DIR/$DATA_DIR/pxi-time-order $a 
+        $sortTime $DATA_DIR/$RunFolder/$a 
       else
         echo "$a.to is generated after $a. skip."
       fi
+    else
+      echo "cannot find $a.to, sort"
+      $sortTime $DATA_DIR/$RunFolder/$a
     fi
   elif [ $TimeSort -eq 0 ]; then
     echo "skipped time sort by user."
   else
     echo "force Time sort"
-    $DATA_DIR/pxi-time-order $DATA_DIR/$RunFolder/$a 
+    $sortTime $DATA_DIR/$RunFolder/$a 
   fi
   
 
@@ -71,15 +77,18 @@ do
     len=`echo $a | wc -c`
     len=$(($len-5))
     rootFile=${a:0:$len}".root"
-    isRootExist=`ls -1 $rootFile | wc -l`
+    isRootExist=`ls -1 $rootFile 2> /dev/null | wc -l`
     if [ ${isRootExist} -gt 0 ]; then
-      echo "found $rootFile"
+      echo "--- found $rootFile"
       rootDateTime=`stat -c "%Z"  $rootFile | sort -rn | head -1`  
       if [ ${toDateTime} -ge ${rootDateTime} ]; then
-        $DATA_DIR/pixie2root $a.to
+        $DIR/pixie2root $a.to
       else
         echo "$rootFile is generated after $a.to skip."
       fi
+    else
+      echo "cannot find $rootFile, build events"
+      $DIR/pixie2root $a.to
     fi  
   elif [ $TimeSort -eq 0 ]; then
     echo "skipped event build by user."
@@ -92,4 +101,6 @@ done
 
 fileList=$(ls *.root)
 
+
+
 cd $DIR