move source files to armory

This commit is contained in:
Ryan Tang 2021-12-20 17:26:48 -05:00
parent 0b69b17aba
commit bbb58ecc09
13 changed files with 41 additions and 1665 deletions

View File

@ -179,9 +179,9 @@ void Analyzer::Terminate(){
hcoinBGO->Draw("colz");
printf("=============== loaded AutoFit.C, try showFitMethos()\n");
gROOT->ProcessLine(".L AutoFit.C");
gROOT->ProcessLine(".L armory/AutoFit.C");
printf("=============== Analyzer Utility\n");
gROOT->ProcessLine(".L Analyzer_Utili.c");
gROOT->ProcessLine(".L armory/Analyzer_Utili.c");
gROOT->ProcessLine("listDraws()");

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@ -15,7 +15,7 @@
#include <TSelector.h>
#include "mapping.h"
#include "AnalysisLibrary.h"
#include "armory/AnalysisLibrary.h"
// Header file for the classes stored in the TTree if any.

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@ -15,8 +15,8 @@
#include "TCanvas.h"
#include "TSystem.h"
#include "mapping.h"
#include "AnalysisLibrary.h"
#include "../mapping.h"
#include "../armory/AnalysisLibrary.h"
#define MAX_CRATES 2
#define MAX_BOARDS_PER_CRATE 13

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@ -54,10 +54,10 @@ public:
printf("HeaderLength: %d, Event Length: %d, energy: %d, timeStamp: %llu\n", headerLength, eventLength, energy, time);
printf("trace_length: %d, pile-up:%d\n", trace_length, pileup);
}
};
//#############################################
// main
//#############################################
int main(int argn, char **argv) {
if (argn != 2 && argn != 3 ) {
@ -72,7 +72,7 @@ int main(int argn, char **argv) {
outFileName.Remove(inFileName.First('.'));
outFileName.Append("_raw.root");
long int fprpos;
long int inFilePos;
TBenchmark gClock;
gClock.Reset();
gClock.Start("timer");
@ -98,6 +98,7 @@ int main(int argn, char **argv) {
printf("out file: %s\n", outFileName.Data());
printf("--------------------------------\n");
//====== ROOT file
TFile * outFile = new TFile(outFileName, "recreate");
TTree * tree = new TTree("tree", "tree");
@ -110,14 +111,13 @@ int main(int argn, char **argv) {
unsigned int header[4]; //read 4 header, unsigned int = 4 byte = 32 bits.
unsigned long long nWords = 0;
unsigned long long fpos = 0;
//=============== Read File
// while ( ! feof(inFile) ){
while ( fpos <= inFileSize ){ // need to check is the last data included.
/// while ( ! feof(inFile) ){
while ( inFilePos <= inFileSize ){ // need to check is the last data included.
fread(header, sizeof(header), 1, inFile);
fpos += sizeof(header);
inFilePos = ftell(inFile);
measureID ++;
/// see the Pixie-16 user manual, Table4-2
@ -137,27 +137,27 @@ int main(int argn, char **argv) {
nWords += data.eventLength;
//printf("----------------------nWords: %llu, fpos: %llu\n", nWords, fpos);
//for(int i = 0; i < 4; i++){
// printf(" %x\n", header[i]);
//}
//data.Print();
///printf("----------------------nWords: %llu, inFilePos: %llu\n", nWords, inFilePos);
///for(int i = 0; i < 4; i++){
/// printf(" %x\n", header[i]);
///}
///data.Print();
//=== jump to next measurement
if( data.eventLength > 4 ){
fseek(inFile, sizeof(int) * (data.eventLength-4), SEEK_CUR);
fpos += sizeof(int) * (data.eventLength-4);
inFilePos = ftell(inFile);
}
//event stats, print status every 10000 events
if ( measureID % 10000 == 0 ) {
fprpos = ftell(inFile);
inFilePos = ftell(inFile);
float tempf = (float)inFileSize/(1024.*1024.*1024.);
gClock.Stop("timer");
double time = gClock.GetRealTime("timer");
gClock.Start("timer");
printf("Total measurements: \x1B[32m%llu \x1B[0m\nPercent Complete: \x1B[32m%ld%% of %.3f GB\x1B[0m\nTime used:%3.0f min %5.2f sec\033[A\033[A\r",
measureID, (100*fprpos/inFileSize), tempf, TMath::Floor(time/60.), time - TMath::Floor(time/60.)*60.);
measureID, (100*inFilePos/inFileSize), tempf, TMath::Floor(time/60.), time - TMath::Floor(time/60.)*60.);
}
//cern fill tree
@ -166,13 +166,13 @@ int main(int argn, char **argv) {
}
fprpos = ftell(inFile);
inFilePos = ftell(inFile);
gClock.Stop("timer");
double time = gClock.GetRealTime("timer");
gClock.Start("timer");
float tempf = (float)inFileSize/(1024.*1024.*1024.);
printf("Total measurements: \x1B[32m%llu \x1B[0m\nPercent Complete: \x1B[32m%ld%% of %.3f GB\x1B[0m\nTime used:%3.0f min %5.2f sec\033[A\r",
measureID, (100*fprpos/inFileSize), tempf, TMath::Floor(time/60.), time - TMath::Floor(time/60.)*60.);
measureID, (100*inFilePos/inFileSize), tempf, TMath::Floor(time/60.), time - TMath::Floor(time/60.)*60.);
fclose(inFile);

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@ -31,7 +31,7 @@
#define RAWE_REBIN_FACTOR 2.0 // Rebin 32k pixie16 spectra to something smaller to fit better into 8k.
#include "mapping.h"
#include "../mapping.h"
/////////////////////
// RAW EVENT TYPES //

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@ -1,25 +1,27 @@
CC=g++
#all: xia2root xia2ev2_nopart pixie2root scan pxi-time-order
all: xia2root xia2ev2_nopart pixie2root scan evt2root evt2hist
#all: xia2root xia2ev2_nopart pixie2root scan evt2root evt2hist
all: xia2root pixie2root evt2root evt2hist
xia2root: xia2root.cpp
$(CC) xia2root.cpp -o xia2root `root-config --cflags --glibs`
#this is FSU evt to root
xia2root: armory/xia2root.cpp
$(CC) armory/xia2root.cpp -o xia2root `root-config --cflags --glibs`
xia2ev2_nopart: xia2ev2_nopart.cpp
$(CC) xia2ev2_nopart.cpp -o xia2ev2_nopart
#xia2ev2_nopart: armory/xia2ev2_nopart.cpp
# $(CC) armory/xia2ev2_nopart.cpp -o xia2ev2_nopart
pixie2root: pixie2root.cpp
$(CC) pixie2root.cpp -o pixie2root `root-config --cflags --glibs`
#this is for eventbuild
pixie2root: armory/pixie2root.cpp
$(CC) armory/pixie2root.cpp -o pixie2root `root-config --cflags --glibs`
evt2root: evt2root.cpp
$(CC) evt2root.cpp -o evt2root `root-config --cflags --glibs`
#this is for online root
evt2root: armory/evt2root.cpp
$(CC) armory/evt2root.cpp -o evt2root `root-config --cflags --glibs`
evt2hist: evt2hist.cpp
$(CC) evt2hist.cpp -o evt2hist `root-config --cflags --glibs`
scan: scan.c
$(CC) scan.c -o scan
#this is for online spectrums
evt2hist: armory/evt2hist.cpp
$(CC) armory/evt2hist.cpp -o evt2hist `root-config --cflags --glibs`
#pxi-time-order: pxi-time-order.c
# $(CC) pxi-time-order.c -o pxi-time-order

1208
scan.c

File diff suppressed because it is too large Load Diff

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@ -1,418 +0,0 @@
#include <stdio.h>
#include <iostream>
#include <fstream>
//for 64bit compiler:
#include <stdlib.h>
#include <string.h>
char outdata[70],outloga[70];
//int *outenergy=NULL;
int outsize=1;
//char *outcount=NULL;
//char *outdetnum=NULL;
char *outcount=new char[1];
char *outdetnum=new char[1];
//outenergy=new int[1];
int *outenergy=new int[1];
//outcount[0]=1;
int correctflag = 0,gateflag = 0,CntAll = 0,CntGate = 0;
long maxtime=100; //max number of 10 ns tics for an event
long maxeventime=0,mineventime=400000000,CntEvts[64];
int multiplicity[10],startdet=15,PileUp[64];
int evN=0;
int evStart = 0;
int evEnd = 1;
unsigned int *bufsam=NULL;
long *bufsiz=NULL;
long negativedelevtimecount=0,timezero=-30000;
int size1,size2,bsize,bsam=2,bread=1,chan,slot,chann,outevtcount=0;
int pu,energy,evtimehi,pileupcount=0,zerocount=0;
unsigned short cfd,cfdold;
int detectorcount=0,mul=0;
short detenergy[256],detid[256];
unsigned long maskpu = 2147483648,evtimelo;
long long deltime=0LL,timeinevent=0LL;
unsigned long long evtime,multiplier=4294967296LL,oldtime=0LL;
long long zero=0LL;
int channel[65][100],timelo[65],timehi[65];
float correctable[65][100];
float fracx,correct,top,bottom,tdc,percent,averagetime=0;
int ipnt,iadc,itdc;
int pntcnt[65];
void InitializeVariables(char **args);
void WriteOutEvent(char **args,FILE *outdat);
void BuildEvent();
int main(int argn,char **argv) {
if ((argn<3) || (argn>8)) {
std::cerr<<"Usage:\n "<<argv[0]<<" filein.evt fileout correctfilename startdetnumber maxtime start_buf# stop_buf#\n Converts physics buffers (type 30) from \'file.evt\' to \'fileout.ev2\' from \'start_buf#\' until\n \'stop_buf#' or whole file if no event numbers are given or \'start buf#\' = 0\n startdetnum is the number of the dE ADC on a scale of 1 to n.\n maxtime defaults to 100 if not specified\n **Use \'NULL\' for the output file to avoid writing an ev2 file. \nNote that the start and end buffer numbers are for the input where each adc \nread forms another buffer.\n This version sets the time in event of the start detector to 100 and all other times relative to that. If a correct file is specified, it dorrects the detectors in the file for walk. It does not write out events which do not contain the start detector.\nAlso it only writes out events in which every ADC times in within the limits specified in the correct.tab file."<<std::endl;
exit(0);
}
FILE *infile=fopen(argv[1],"r");
if (infile==NULL) {
std::cerr<<"Problem opening "<<argv[1]<<std::endl;
exit(0);
}
strcpy (outdata,argv[2]);
strcat (outdata,".ev2");
FILE *outdat=fopen(outdata,"wb");
std::cout<<"Writing output data to "<<outdata<<std::endl;
/**
if (argn==3) { // Only in and out files given
evStart=0;
evEnd=1;
}
if (argn == 4) { // In, out, correct files given
evStart=0;
evEnd=1;
correctflag = 1;
}
if (argn==5) { // In, out, correct files and startdet given
evStart=0;
evEnd=1;
startdet=atoi(argv[4]);
correctflag = 1;
}
if (argn==6) { // Also maxtime given
evStart=0;
evEnd=1;
maxtime=atoi(argv[5]);
startdet=atoi(argv[4]);
correctflag = 1;
}
if (argn>6) {
evStart=atoi(argv[6]);
maxtime=atoi(argv[4]);
startdet=atoi(argv[5]);
correctflag = 1;
if (evStart == 0) evEnd = 1;
else {
std::cerr<<"You must specify an end event number if the start event number is not 0. Your start event number is "<<evStart<<std::endl;
exit(0);
}
} else if (argn==7) {
evStart=atoi(argv[5]);
evEnd=atoi(argv[6]);
maxtime=atoi(argv[4]);
startdet=atoi(argv[3]);
}
*
*/
int sizes=0;
long typebuf[100]={0},type;
if (evEnd<evStart) {
std::cerr<<"start event number must be less than last)."<<std::endl;
fclose(infile);
exit(0);
}
// change this for 64bit compiler long *bufsam=NULL;
std::cout<<"The start detector number is "<<startdet<<std::endl;
InitializeVariables(argv);
while ((evN<evEnd) || (evStart == 0)) {
//std::cout<<evStart<<" end"<<evEnd<<" num"<<evN<<std::endl;
bufsiz=new long[bsam];
//change long -> int for 64 bit
fread(bufsiz,sizeof(int),bread,infile);
//std::cout<<bread<<" "<<bufsiz[0]<<std::endl;
sizes=bufsiz[0];
if (feof(infile)) break;
evN++;
bsize = (sizes-4);
// change for 64bit bufsam=new long[bsize/4+1];
bufsam=new unsigned int[bsize/4+1];
fread((char*)bufsam,1,bsize,infile);
//std::cout<<"("<<evN<<") "<<bufsam[0]<<" "<<bufsam[1]<<" "<<bufsam[2]<<" "<<bufsam[5]<<std::endl;
//std::cout<<"evN "<<evN<<" evStart "<<evStart<<" evEnd "<<evEnd<<std::endl;
if (evN>=evStart) {
if (bufsam[0] == 30) {
chan = (bufsam[2]) & (15);
slot = ((bufsam[2]) & (240))/16;
chann = (slot - 2)*16 + chan + 1;
pu = ((bufsam[2]) & (maskpu))/maskpu;
energy = ((bufsam[5]) & 65535);
evtimehi = ((bufsam[4]) & 65535);
evtimelo = bufsam[3];
evtime = evtimelo + multiplier*evtimehi;
cfd = bufsam[4]/65536;
deltime = evtime - oldtime;
if(deltime < zero) negativedelevtimecount++;
if (energy==0) zerocount++;
if(pu>0)pileupcount++;
if ((pu > 0)&&(chann>0)&&(chann<65)) PileUp[chann-1]++;
// ignore pileups
timeinevent=timeinevent+deltime;
oldtime = evtime;
if(timeinevent > maxtime) {
//This detector starts another event. First write out the previous event.
WriteOutEvent(argv,outdat);
// Now store this signal which starts a new event
timeinevent = 1;
timezero = -30000;
detectorcount = 0;
mul = 0;
averagetime = 0;
BuildEvent();
}else {
//This is just another detector in the current event
//Now we have to put the event just read into the buffer
BuildEvent();
} //end if(timeinevent
} //end if bufsam[0]=30
} //end if evN >= evStart
} //end while evN < evEnd
delete [] bufsiz;
delete [] bufsam;
if(feof(infile) && evN<evEnd && evStart != 0) {
std::cerr<<"The requested event is out of range (too high)."<<std::endl;
}
//Write out last event
WriteOutEvent(argv,outdat);
//Print out summaries
std::cout<<negativedelevtimecount<<" negative delta event times; "<<pileupcount<<" pileups; "<<zerocount<<" zeros"<<std::endl;
std::cout<<" max time in event = "<<maxeventime<<"; min time betweeen events = "<<mineventime<<"\n If either of these numbers is close to "<<maxtime<<" you may want to change maxtime"<<std::endl;
if (strcmp(argv[2],"NULL") != 0) std::cout<<"wrote "<<outevtcount-1<<" events to file "<<argv[2]<<std::endl;
for(int is=0;is<10;is=is+2) {
std::cout<<multiplicity[is]<<" mul "<<is+1<<" "<<multiplicity[is+1]<<" mul "<<is+2<<std::endl;
}
for(int is=0; is<64;is++) {
if (PileUp[is] > 0) std::cout<<"PU("<<is+1<<") = "<<PileUp[is]<<std::endl;
}
std::cout<<"Total coincidence events ="<<CntAll<<" Number in time gates = "<<CntGate<<std::endl;
percent = 0.;
if (CntAll > 0) percent = 100. * float(CntGate)/ float(CntAll);
std::cout<<" Percent in time gate = "<<percent<<std::endl;
fclose(infile);
// Write summaries to file:
strcpy (outloga,argv[2]);
strcat (outloga,".log");
FILE *outlog=fopen(outloga,"wb");
std::cout<<"Writing conversion log to "<<outloga<<std::endl;
if (correctflag >0) fprintf(outlog,"Corrected time walk using file %s \n\n",argv[3]);
if (strcmp(argv[2],"NULL") != 0) fprintf(outlog,"wrote %i events to %s using xia2ev2_part with particle detector number %i\n\n",outevtcount,outdata,startdet);
fprintf(outlog,"negativedelevtimecount = %i, pileupcount = %i zerocount = %i\n",negativedelevtimecount,pileupcount,zerocount);
fprintf(outlog,"max time (10 ns) in event = %i min time betweeen events = %i\n\n",mineventime,maxtime);
for(int is=0;is<10;is=is+2) fprintf(outlog,"multiplicity %i: counts = %i; multiplicity %i: counts = %i\n",is+1,multiplicity[is],is+2,multiplicity[is+1]);
fprintf(outlog,"\n");
for(int is=0; is<64;is++) {
if (CntEvts[is] > 0) fprintf(outlog,"ADC(%i): Counts = %i Pileups = %i\n",is+1,CntEvts[is],PileUp[is]);
}
percent = 0.;
if (CntAll > 0) percent = 100. * float(CntGate)/ float(CntAll);
fprintf(outlog,"Total coincidence events = %i Number in time gates = %i\n Percent in time gate = %5.2f\n",CntAll,CntGate,percent);
if (strcmp(argv[2],"NULL") != 0) fclose(outdat);
return 0;
}
void InitializeVariables(char **args) {
//initialize correctable
for (ipnt = 0; ipnt<65; ipnt++) pntcnt[ipnt]=0;
for (int adc=0; adc<65; adc++){
timelo[adc] = 0; timehi[adc]=32767;
for (ipnt=0; ipnt<100; ipnt++) {
correctable[adc][ipnt] = -1.;
channel[adc][ipnt]=-1;
}
}
for (int is=0; is<10; is++) multiplicity[is]=0;
for (int is=0; is<64;is++) PileUp[is]=0;
for (int is=0; is<64; is++) CntEvts[is]=0;
if (correctflag > 0) {
// Read in correction table
std::cerr<<"correction table file = "<<args[3]<<std::endl;
std::ifstream *in = new std::ifstream( args[3], std::ios::in);
ipnt=0;
float offset;
*in >> iadc;
*in >> offset;
*in >> timelo[iadc];
*in >> timehi[iadc];
while (iadc >= 0) {
if (startdet == -2) std::cout<<"iadc ="<<iadc<<" offset = "<<offset<<" timelo = " <<timelo[iadc]<<" timehi = "<<timehi[iadc]<<std::endl;
if (iadc > 0 && iadc < 65) {
*in >> channel[iadc][ipnt];
while (channel[iadc][ipnt] >=0) {
*in >> correctable[iadc][ipnt];
correctable[iadc][ipnt] = correctable[iadc][ipnt] +offset;
pntcnt[iadc]++;
if (startdet == -2) std::cout<<"["<<iadc<<"] "<<channel[iadc][ipnt]<<": "
<<correctable[iadc][ipnt]<<"\n";
ipnt++;
*in >> channel[iadc][ipnt];
// std::cout<<channel[iadc][ipnt]<<"\n";
}
// std::cout<<"pntcnt["<<iadc<<"] = "<<pntcnt[iadc]<<"\n";
*in >> iadc;
*in >> offset;
*in >> timelo[iadc];
*in >> timehi[iadc];
} //end if (iadc
ipnt=0;
} //end while (iadc
if (startdet == -2) return;
} //end if (correctflag > 0
} //end void InitializaVariables
void WriteOutEvent(char **args,FILE *outdat) {
if(timeinevent < mineventime) mineventime = timeinevent;
if (mul>8) mul=9;
multiplicity[mul]++;
if (strcmp(args[2],"NULL") != 0) {
detectorcount = detectorcount & 255;
// timezero will be > 0 if startdet fired in this event
// if(detectorcount > 0 && timezero > -30000) {
if(detectorcount > 0 && timezero == -30000) {
CntAll ++;
// printf("\n[%i] ",detectorcount);
for (int icnt=1; icnt<detectorcount; icnt = icnt + 2) {
iadc = detid[icnt-1];
// printf("%i: %i %i ",iadc,detenergy[icnt-1],detenergy[icnt]);
if (pntcnt[iadc] > 0) { //Is there a correct table for this ADC?
ipnt=0;
// Linear interpolation between points in correct.tab
while (ipnt < pntcnt[iadc] && (detenergy[icnt-1] >= channel[iadc][ipnt])) ipnt++;
top = correctable[iadc][ipnt] - correctable[iadc][ipnt-1];
bottom = channel[iadc][ipnt] - channel[iadc][ipnt-1];
fracx = top/bottom;
correct = correctable[iadc][ipnt-1] + fracx*(detenergy[icnt] - channel[iadc][ipnt-1]);
tdc = detenergy[icnt];
if (detid[icnt-1] != startdet) tdc = 200 - correct + tdc;
if (detid[icnt-1] == startdet) tdc = correct + tdc;
if (tdc <1) tdc=1; if (tdc > 32767) tdc=32767;
detenergy[icnt] = tdc + 0.5;
averagetime += tdc;
if (detid[icnt-1] == startdet) timezero = (long) (tdc+0.5);
} //end if (pntcnt
else if (timezero == -30000) {
detenergy[icnt] = detenergy[icnt] + 99;
averagetime += detenergy[icnt];
}
} //end for (int icnt=
// Adjust for timezero
averagetime = 2*averagetime/detectorcount;
for (int icnt=1; icnt<detectorcount; icnt = icnt + 2) {
tdc = detenergy[icnt];
// tdc = tdc + 99 - timezero;
tdc = tdc + 99 - averagetime;
detenergy[icnt] = tdc;
}
// Check time gates
gateflag = 0;
for (int icnt=1; icnt<detectorcount; icnt = icnt + 2) {
itdc = detenergy[icnt]; iadc = detid[icnt-1];
if ((itdc < timelo[iadc]) || (itdc > timehi[iadc])) gateflag = 1;
}
// write out event if in gate
if (gateflag == 0) {
CntGate ++;
outevtcount++;
outcount[0] = detectorcount;
fwrite(outcount,sizeof(char),outsize,outdat);
for (int icnt=0; icnt<detectorcount; icnt++) {
outdetnum[0]=detid[icnt];
outenergy[0]=detenergy[icnt];
fwrite(outdetnum,sizeof(char),outsize,outdat);
fwrite(outenergy,sizeof(short),outsize,outdat);
} // end for (int icnt=0
fwrite(outcount,sizeof(char),outsize,outdat);
} // end if (gateflag == 0)
} //end if(detectorcount > 0 && timezero > -30000)
} //endif strcmp
// timeinevent = 0;
// timezero=-30000;
} //end void WriteOutEvent(
void BuildEvent() {
if(timeinevent > maxeventime) maxeventime = timeinevent;
mul++;
//first put energy in list
//suppress zero energies and those over range to not confuse gnuscope
if(energy>10 && energy < 32000) {
detid[detectorcount]=chann;
detenergy[detectorcount]=energy;
detectorcount++;
if (chann == startdet) timezero = timeinevent + 99;
//now put timeinevent in list as chann + 64
detid[detectorcount]=chann+64;
detenergy[detectorcount]=timeinevent;
detectorcount++;
} // end if (energy>10 ..
} // end BuildEvent