Data Server

Notice :

for requesting a user account, see Data_Server#Common_Users_Account Common_Users Account

Network IP and Alias

IP	network alias	functions
128.186.111.42	pauli.physics.fsu.edu	for user login
128.186.111.43	pauli-data.physics.fsu.edu	for data transfer

Spec.

• Dell PowerEdge R540 Rack server
• CPU : Intel Xeon Gold, 36 cores
• RAM : 32 GB
• Storage :
  • 1.9TB SSD for OS and /home/ at the rear slot-1
  • 1TB for data (temporary) /mnt/data_1TB at the rear slot-2
  • 6x16TB for data /mnt/data0 at the front slot-1,2,3,4,5,6
• OS : Ubuntu 20.04

Detail Spec.

Here are the detail spec.

Items	description	Item number
Additional Network Cards	On-Board LOM	542-BBBP
Additional Processor	No Additional Processor	374-BBBX
Advanced System Configurations	UEFI BIOS Boot Mode with GPT Partition	800-BBDM
Bezel	No Bezel	350-BBBW
	Dell EMC Luggage Tag	350-BBLI
Chassis Configuration	3.5"Chas up 12 HP HDs 2x3.5" Rear Drives,PERC/HBA11	321-BHDM
Dell Services: Hardware Support	Basic Hardware Services: Business Hours (5X10) Next Business Day On Site Hardware Warranty Repair 3 Years	815-4327
	Dell Hardware Limited Warranty Plus On-Site Service	815-4328
Deployment Services	On-Site Installation Declined	900-9997
Embedded Systems Management	iDrac9, Express	385-BBLC
Group Manager	iDRAC Group Manager, Disabled	379-BCQY
Hard Drives	1TB 7.2K RPM SATA 6Gbps 512n 2.5in Hot-plug Hard Drive, 3.5in HYB CARR	400-ASHG
Hard Drives (PCIe SSD/Flex Bay)	1.92TB SSD SATA Read Intensive 6Gbps 512 2.5in Flex Bay AG Drive,3.5in HYB CARR, 1 DWPD	400-AXRY
Internal Optical Drive	No Internal Optical Drive	429-AAIQ
Memory Capacity	32GB RDIMM, 3200MT/s, Dual Rank 16Gb BASE x8	370-AGDS
Memory Configuration Type	Performance Optimized	370-AAIP
Memory DIMM Type and Speed	3200MT/s RDIMMs	370-AEVR
Motherboard	PowerEdge R540 MLK Motherboard, V2	329-BFBK
Operating System	No Operating System	619-ABVR
OS Media Kits	No Media Required	421-5736
Password	iDRAC,Factory Generated Password	379-BCSF
PCIe Riser	1xFH, 1 or 2CPU	330-BBHT
Power Cords	Power Cord - C13, 3M, 125V, 15A (North America, Guam, North Marianas, Philippines, Samoa, Vietnam)	450-AALV
Power Management BIOS Settings	Performance BIOS Settings	384-BBBL
Power Supply	Single,Hot-plug Power Supply,495W	450-AGUG
Processor	Intel Xeon Gold 5220 2.2G, 18C/36T, 10.4GT/s, 24.75M Cache, Turbo, HT (125W) DDR4-2666	338-BSDI
Processor Thermal Configuration	1 CPU Standard Thermal for 3.5" Chassis	322-BBBJ
Quick Sync 2 (At-the-box mgmt)	Quick Sync 2 (At-the-box mgmt)	350-BBKV
Rack Rails	ReadyRails Sliding Rails With Cable Management Arm	770-BBBR
RAID Configuration	Unconfigured RAID	780-BCDS
RAID/Internal Storage Controllers	PERC H750 Adapter, Low Profile	405-ABCC
Regulatory	PowerEdge R540 CCC and BIS Marking, No CE Marking	389-DSXE
Shipping	PowerEdge R540 Shipping	340-BSID
Shipping Information	US Order	332-1286
\ PowerEdge R540 Shipping Material, V2	340-COSN
System Documentation	No Systems Documentation, No OpenManage DVD Kit	631-AACK
Trusted Platform Module (TPM)	Trusted Platform Module 2.0	461-AAEM

Software

Software/Code	Info.
CERN ROOT 6.26/02
docker
python3-pip	pip or pip3 are the command
PtolemyGUI	GUI for DWBA calculation using Ptolemy, it will create a file call DWBA.
/opt/Ptolemy/Cleopatra/Isotope.h	a C++ Class (Isotope) for mass20.txt
(TBD) twoBodyReaction.h	a C++ Class for A+a→b+B reaction kinematics.
(TBD) Radware
gnuscope (via docker)	Only able to run at local, for user Tandem
Globus personal connect

Common Users Account

tandem (fsuphysics888) is the general user account.

Anyone wish to have a personal account can be contact Ryan mailto:rtang@fsu.edu, and provides following information

• full name:
• username:
• email:

[ admin only ] Create an user account

there is a bash script in /usr/bin/createNewUser.sh. This script will create an account and set disk-quota limit.

User Quota

The default quota for user is 50GB soft limit and 100GB hard limit.

• soft limit: user still can use more than 50G in the next 7 days, after that, this 50G is the hard limit.
• hard limit: user can never use more than 100G.

Setup

install the quota program

sudo apt install quota

edit the /etc/fstab

from this

UUID=fc15d3a2-a49f-4974-8216-5949a740ef80 /   ext4    errors=remount-ro 0       1

to this:

UUID=fc15d3a2-a49f-4974-8216-5949a740ef80 /   ext4    errors=remount-ro,usrquota 0       1

remount

sudo mount -o remount /

check the new effect

cat /proc/mounts | grep ' / '
/dev/sdc2 / ext4 rw,relatime,quota,usrquota</spam>,errors=remount-ro,stripe=64 0 0

enable the quota

sudo quotacheck -ugm /

This will create /aquota.user

check

sudo quotaon -v /
/dev/sdc2 [/]: user quotas turned on

Set user quota

use the command 'setquota' to set user quota, in this example 50G is the soft limit, 100G is the hard limit.

sudo setquota -u <User> 50G 100G 0 0 /

quota report

sudo repquota -s /

Disks available

Disk	Capacity	Speed	Type	Slot	Command
/	1.9 TB	533 MB/s	SSD	rear-1	OS disk
/mnt/data_1TB	1 TB	108 MB/s	HDD	rear-2	not recommended
/mnt/data0	80 TB	340 MB/s	RAID-5 6x16TB HHD	front-1,2,3,4,5,6	recommended

• RAID information
• RAID Calculator

Globus Personal Connect

For more detail, please check https://docs.globus.org/how-to/globus-connect-personal-linux/

The program is stored in /opt/globusconnectpersonal/

to Run

~>/opt/globusconnectpersonal/globusconnect &

It will ask you to login, follow the steps and use your FSU credential.

enable access of data0

if you cannot access the data0, edit the file at you home ~/.globusonline/lta/config-path

~/,0,1
/mnt/,1,1

The 1st line is the access of your home directory, not-share, allow read/write.

The 2nd line is the access of the /mnt/ directory, share, allow read/write.

To clear the setting / remove credential

Simply remove the folder ~/.globusonline

Exp Folder format

Please use

YYYY_MM_beam_reaction_PI_extra

• YYYY : year in 4 digits
• MM : month is 4 digits
• beam : e.g. 12C
• reaction : e.g. dp
• PI : name of PI
• extra : some extra comments, can be skipped.

For example, Eli perform 12C(d,n)reaction on April, 2022.

2022_04_12C_dn_eli

Mount disk remotely

To mount the disk remotely, need the sshfs installed in the local machine. In Debian/Ubuntu

~>sudo apt install sshfs

Create a mount directory in the local machine (say /mnt/data0)

~>sudo mkdir /mnt/data0

Mounting

~>sudo sshfs -o allow_other YYY@pauli-data.physics.fsu.edu:XXX  /mnt/data0/

where YYY is the user account where XXX is the disk location in the data server.

To mount on startup

edit /etc/fstab

add line

ssh#YYY@pauli.physics.fsu.edu:XXX  /mnt/data0/

Python3 packages

Here is the list of the python3 packages on May 6, 2022

• apturl 0.5.2
• bcrypt 3.1.7
• blinker 1.4
• Brlapi 0.7.0
• certifi 2019.11.28
• cffi 1.15.0
• chardet 3.0.4
• click 8.1.3
• colorama 0.4.3
• command-not-found 0.3
• cryptography 36.0.2
• cupshelpers 1.0
• dbus-python 1.2.16
• defer 1.0.6
• distro 1.4.0
• distro-info 0.23ubuntu1
• duplicity 0.8.12.0
• entrypoints 0.3
• fasteners 0.14.1
• future 0.18.2
• globus-cli 3.5.0
• globus-sdk 3.8.0
• httplib2 0.14.0
• idna 2.8
• jmespath 0.10.0
• keyring 18.0.1
• language-selector 0.1
• launchpadlib 1.10.13
• lazr.restfulclient 0.14.2
• lazr.uri 1.0.3
• lockfile 0.12.2
• louis 3.12.0
• macaroonbakery 1.3.1
• matplotlib 3.5.2
• monotonic 1.5
• netifaces 0.10.4
• numpy 1.22.3
• oauthlib 3.1.0
• olefile 0.46
• paramiko 2.6.0
• pexpect 4.6.0
• Pillow 7.0.0
• pip 20.0.2
• protobuf 3.6.1
• pycairo 1.16.2
• pycparser 2.21
• pycups 1.9.73
• PyGObject 3.36.0
• PyJWT 2.3.0
• pymacaroons 0.13.0
• PyNaCl 1.3.0
• pyRFC3339 1.1
• PySimpleGUI 4.59.0
• python-apt 2.0.0+ubuntu0.20.4.7
• python-dateutil 2.7.3
• python-debian 0.1.36ubuntu1
• pytz 2019.3
• pyxdg 0.26
• PyYAML 5.3.1
• reportlab 3.5.34
• requests 2.22.0
• requests-unixsocket 0.2.0
• SecretStorage 2.3.1
• setuptools 45.2.0
• simplejson 3.16.0
• six 1.14.0
• ssh-import-id 5.10
• systemd-python 234
• typing-extensions 4.2.0
• ubuntu-advantage-tools 27.7
• ubuntu-drivers-common 0.0.0
• ufw 0.36
• unattended-upgrades 0.1
• urllib3 1.25.8
• usb-creator 0.3.7
• wadllib 1.3.3
• wheel 0.34.2
• xkit 0.0.0

Others

• Documents and Manuels
• Overview in webpage
• Left Pannel LED status

Contact

• Ryan Tang mailto:rtang@fsu.edu