Another commit in between many breaking changes. Has Hammer+Tweezer approach for 27Al and 17F applied.

* Analyzing 17F approach will require the use of a #define in addition to globals. Not ideal but it is what it is.

* No new clever tricks other than beam eloss being treated to account for more effects.

* Urgent pending alignments:

	- geometry between sx3/qqq/pc to reflect vertexz in agreement with sourcez

	- better dynamic range correction for a1c2 wire handover points

	- need to resolve dE layer for different particle groups. No luck yet with just a *sinTheta

	- p+a dataset seems to be getting closer and closer to fully fleshed out

* Do not use this commit for future analyses. Pushed under sleep deprivation and fatigue.

Armory/Armory/ClassDet.h

@@ -14,6 +14,7 @@ public:
   unsigned short       ch[MAXMULTI];
   unsigned short       e[MAXMULTI];
   unsigned long long   t[MAXMULTI];
+  unsigned long long   tf[MAXMULTI];
 
   unsigned short         sn[MAXMULTI];
   unsigned short     digiCh[MAXMULTI];
@@ -28,6 +29,7 @@ public:
       ch[i] = 0;
        e[i] = 0;
        t[i] = 0;
+       tf[i] = 0;
        index[i] = 0;
        sn[i] = 0;
        digiCh[i] = 0;
@@ -38,7 +40,7 @@ public:
   void Print(){
     printf("=============================== multi : %u\n", multi);
     for( int i = 0; i < multi; i++) {
-      printf(" %3d | %2d-%-2d(%5d) %5u %15llu \n", i, id[i], ch[i], index[i], e[i], t[i]);
+      printf(" %3d | %2d-%-2d(%5d) %5u %15llu %15llu\n", i, id[i], ch[i], index[i], e[i], t[i], tf[i]);
     }
   }
 

Armory/Kinematics.cpp

@@ -44,7 +44,7 @@ double Kinematics::getExc(double t3, double angle3)
     theta4 = (180./M_PI)*TMath::ASin((p3/P4)*TMath::Sin(angle3*M_PI/180.));
 
 //    T4-=16.5; //eloss in about 1.4 mg CD2
-    T4-=15.5; //eloss in 1.35 mg CD2 //TODO: actually degrade recoil/ejectiles in target
+//    T4-=15.5; //eloss in 1.35 mg CD2 //TODO: actually degrade recoil/ejectiles in target
 //    T4-=14.1; //eloss in about 1.2 mg CD2
 //    T4-=31.7; //eloss in 2.7 mg CD2
 

MakeVertex.h

@@ -13,6 +13,12 @@
 #include "Armory/ClassDet.h"
 #include "Armory/ClassPW.h" // YOU ADDED THIS (Correct! Defines Coord)
 
+
+
+std::string dataset;
+double source_vertex=53.0;
+bool reactiondata=false;
+
 class MakeVertex : public TSelector {
 public :
     TTree          *fChain;   //!pointer to the analyzed TTree or TChain
@@ -90,6 +96,7 @@ public :
 
 	void MakeAnalysisHistograms();
 	void MakeDiagnosticHistograms();
+
     ClassDef(MakeVertex,0);
 };
 
@@ -124,6 +131,15 @@ void MakeVertex::Init(TTree *tree) {
     fChain->SetBranchAddress("pcCh",     &pc.ch, &b_pcCh);
     fChain->SetBranchAddress("pcE",      &pc.e, &b_pcE);
     fChain->SetBranchAddress("pcT",      &pc.t, &b_pcT);
+
+#ifdef ADD_NEW_BRANCHES	
+    fChain->SetBranchAddress("miscMulti", &misc.multi, &b_miscMulti);
+    fChain->SetBranchAddress("miscID",    &misc.id, &b_miscID);
+    fChain->SetBranchAddress("miscCh",    &misc.ch, &b_miscCh);
+    fChain->SetBranchAddress("miscE",     &misc.e, &b_miscE);
+    fChain->SetBranchAddress("miscT",     &misc.t, &b_miscT);
+    fChain->SetBranchAddress("miscF",     &misc.tf, &b_miscTf); 
+#endif
 }
 
 Bool_t MakeVertex::Notify() {

cutlist.txt

@@ -2,3 +2,5 @@ results/anode_strip_diagonalCut1.root   anode_sx3_diag1
 results/anode_strip_diagonalCut2.root   anode_sx3_diag2
 results/anode_wedge_diagonalCut1.root   anode_qqq_diag1
 results/anode_wedge_diagonalCut2.root   anode_qqq_diag2
+cuts/alphas_anode_qqq.root   anode_qqq_alphas_27Al
+cuts/mystery_gate.root      mystery_gate

results/compareE_pcalpha.C

@@ -10,7 +10,8 @@
 
 //    TFile fin("../results_run017.root");
 //    TFile fin("out_zminus5_catima.root");
-    TFile fin("out.root");
+    //TFile fin("out.root");
+    TFile fin("out_truncRhoVertex_Z_vertex.root");
     //TH2F *h2 = (TH2F*)(fin.Get("Ef_thetaf_AnodeQQQR_TC1_PC1_pidlow0_1"));
 //    TFile fin("run15_sx3_qqq_alphas_kinematic.root");
     TH2F *h2 = (TH2F*)(fin.Get("proton+misc_cathode_alphas/pmisc_Ef_vs_theta_qqq_cathode_alphas"));

run_17F.sh

@@ -1,6 +1,8 @@
 rm results_run*.root
 export DATASET="17F"
 export reactiondata=1
+root -l -q -x -e ".L MakeVertex.C++g"
+rm 17F_output/*.root
 
 #17F reaction data
 #declare -i run=231 #49
@@ -16,13 +18,14 @@ function run_once() {
     wrun=$(printf "%03d" $1)
     file_exists=$(test -f /home/sud/Desktop/Software2/ANASEN_analysis/data/17F_fsu_files/Run_"$wrun"_mapped.root)
     if [[ $file_exists -ne 0 ]]; then return; fi
-    root -q -l -b -x /home/sud/Desktop/Software2/ANASEN_analysis/data/17F_fsu_files/Run_"$wrun"_mapped.root -e $(printf 'tree->Process("MakeVertex.C+O","analyzed_run%s.root")' "$wrun");
+    root -q -l -b -x /home/sud/Desktop/Software2/ANASEN_analysis/data/17F_fsu_files/Run_"$wrun"_mapped.root -e 'gInterpreter->ProcessLine("#define ADD_NEW_BRANCHES 1");' -e $(printf 'tree->Process("MakeVertex.C+","analyzed_run%s.root")' "$wrun");
     mv analyzed_run$wrun.root results_run$wrun.root;
 }
 
 export -f run_once
 #run_once 351
-parallel -j 6 --ctag run_once {1} ::: {350..400}
+#parallel -j 6 --ctag run_once {1} ::: {350..400}
+parallel -j 6 --ctag run_once {1} ::: {350..360}
 rm output_17F.root
 hadd -j 4 -k output_17F.root results_run3*.root
 

run_27Al.sh

@@ -29,13 +29,14 @@ function run_once() {
 }
 
 export -f run_once
-time parallel -j 6 --ctag run_once {1} ::: {50..59}
-time parallel -j 2 --ctag run_once {1} ::: {78..89}
+time parallel -j 2 --ctag run_once {1} ::: {50..59}
+time parallel -j 2 --ctag run_once {1} ::: 62 63 66 67 68 73 74
+#time parallel -j 2 --ctag run_once {1} ::: {78..89}
 
 
 hadd -k -j 4 output.root 27Al_output/results_run*.root
 mv output.root output_27Al.root
-
+rootbrowse output_27Al.root
 unset souce_vertex
 unset DATASET
 unset flip180

run_sx3.sh

@@ -57,9 +57,10 @@ function run_once() {
     mv analyzed_run$wrun.root results_run$wrun.root;
 }
 export -f run_once
-time parallel -j 4 --ctag run_once {1} ::: {16..22}
+time parallel -j 4 --ctag run_once {1} ::: {17..22}
 exit
 fi
+
 #27Al reaction data
 #root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_051_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run51.root;
 #root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_078_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run78.root;
@@ -85,8 +86,23 @@ fi
 #root -q -l -b -x ../ANASEN_analysis/data/17F_Data/PulserRun_016_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run16.root;
 #root -q -l -b -x ../ANASEN_analysis/data/17F_Data/PulserRun_017_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run17.root;
 
+#17F proton+gas runs
+if [[ 1 -eq 0 ]]; then
+function run_once() {
+    export DATASET="17F"
+    wrun=$(printf "%03d" $1)
+    file_exists=$(test -f ../ANASEN_analysis/data/17F_Data/ProtonRun_"$wrun"_mapped.root)
+    if [[ $file_exists -ne 0 ]]; then return; fi
+    root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_"$wrun"_mapped.root -e $(printf 'tree->Process("MakeVertex.C+O","analyzed_run%s.root")' "$wrun");
+    mv analyzed_run$wrun.root results_run$wrun.root;
+}
+export -f run_once
+time parallel -j 4 --ctag run_once {1} ::: {22..48}
+exit
+fi
+
 #17F alpha run with gas
-if [[ 1 -eq 1 ]]; then
+if [[ 1 -eq 0 ]]; then
 export source_vertex=53.44; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/SourceRun_018_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run18.root;
 export source_vertex=14.24; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/SourceRun_019_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run19.root;
 export source_vertex=-24.96; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/SourceRun_020_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run20.root;