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ANASEN_analysis/run_sx3.sh
Sudarsan Balakrishnan f6f07a1b0c Another commit in between many breaking changes. Has Hammer+Tweezer approach for 27Al and 17F applied. 
* Analyzing 17F approach will require the use of a #define in addition to globals. Not ideal but it is what it is.

* No new clever tricks other than beam eloss being treated to account for more effects.

* Urgent pending alignments:

	- geometry between sx3/qqq/pc to reflect vertexz in agreement with sourcez

	- better dynamic range correction for a1c2 wire handover points

	- need to resolve dE layer for different particle groups. No luck yet with just a *sinTheta

	- p+a dataset seems to be getting closer and closer to fully fleshed out

* Do not use this commit for future analyses. Pushed under sleep deprivation and fatigue.
2026-06-08 17:49:52 -04:00

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#Alpha runs at different spacer positions
#rm results_run*.root
export anode_offset=0
export cathode_offset=0
export DATASET="27Al"
root -l -q -x -e ".L MakeVertex.C++"
if [[ 1 -eq 0 ]]; then
#root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_009_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run09.root;
root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_001_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run01.root;
root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_002_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run02.root;
root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_003_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run03.root;
root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_004_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run04.root;
root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_005_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run05.root;
root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_006_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run06.root;
root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_007_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run07.root;
root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_008_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run08.root;
fi
#exit
#alpha+gas 27Al
export DATASET="27Al"
#root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_009_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run09.root;
if [[ 1 -eq 0 ]]; then
#export timecut_low=230.0;
export timecut_low=400.0;
#export timecut_high=400.0;
#unset timecut_low, timecut_high
#export source_vertex=53.44; root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_009_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run09.root;
#export source_vertex=53.44; root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_010_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run10.root;
#export source_vertex=53.44; root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_011_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run11.root;
export source_vertex=53.44; root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_012_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run12.root;
#export source_vertex=53.44; root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_013_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run13.root;
unset timecut_low
fi
#protons+gas, 27Al
if [[ 1 -eq 0 ]] ; then
#export anode_offset=0
#export source_vertex=-200.0; #put the 'source' on the entrance window
#export source_vertex=-57.28; root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_015_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run15.root;
export source_vertex=-135.68; root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_017_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run17.root;
exit
root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_018_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run18.root;
root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_019_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run19.root;
root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_020_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run20.root;
root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_021_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run21.root;
root -q -b -x ../ANASEN_analysis/data/27Al_Data/Run_022_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run22.root;
exit
fi
if [[ 1 -eq 1 ]]; then
function run_once() {
wrun=$(printf "%03d" $1)
file_exists=$(test -f ../ANASEN_analysis/data/27Al_Data/Run_"$wrun"_mapped.root)
if [[ $file_exists -ne 0 ]]; then return; fi
root -q -l -b -x ../ANASEN_analysis/data/27Al_Data/Run_"$wrun"_mapped.root -e $(printf 'tree->Process("MakeVertex.C+O","analyzed_run%s.root")' "$wrun");
mv analyzed_run$wrun.root results_run$wrun.root;
}
export -f run_once
time parallel -j 4 --ctag run_once {1} ::: {17..22}
exit
fi
#27Al reaction data
#root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_051_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run51.root;
#root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_078_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run78.root;
#root -b -q -l -x ../ANASEN_analysis/data/27Al_Data/Run_081_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run81.root;
#root -l -x results_run19.root results_run12.root -e "new TBrowser"
#exit
export DATASET="17F"
if [[ 1 -eq 0 ]]; then
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_005_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run05.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_006_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run06.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_007_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run07.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_008_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run08.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_009_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run09.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_010_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run10.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_011_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run11.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_012_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run12.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_013_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run13.root;
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Source_014_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run14.root;
fi
#17F pulser runs
#root -q -l -b -x ../ANASEN_analysis/data/17F_Data/PulserRun_015_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run15.root;
#root -q -l -b -x ../ANASEN_analysis/data/17F_Data/PulserRun_016_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run16.root;
#root -q -l -b -x ../ANASEN_analysis/data/17F_Data/PulserRun_017_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run17.root;
#17F proton+gas runs
if [[ 1 -eq 0 ]]; then
function run_once() {
export DATASET="17F"
wrun=$(printf "%03d" $1)
file_exists=$(test -f ../ANASEN_analysis/data/17F_Data/ProtonRun_"$wrun"_mapped.root)
if [[ $file_exists -ne 0 ]]; then return; fi
root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_"$wrun"_mapped.root -e $(printf 'tree->Process("MakeVertex.C+O","analyzed_run%s.root")' "$wrun");
mv analyzed_run$wrun.root results_run$wrun.root;
}
export -f run_once
time parallel -j 4 --ctag run_once {1} ::: {22..48}
exit
fi
#17F alpha run with gas
if [[ 1 -eq 0 ]]; then
export source_vertex=53.44; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/SourceRun_018_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run18.root;
export source_vertex=14.24; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/SourceRun_019_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run19.root;
export source_vertex=-24.96; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/SourceRun_020_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run20.root;
export source_vertex=-73.96; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/SourceRun_021_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run21.root;
exit
fi
#17F reaction data
if [[ 1 -eq 0 ]]; then
export source_vertex=-57.28; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_035_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run35.root;
#export source_vertex=-8.28; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_036_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root resulrs_run36.root;
#export source_vertex=-27.88; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_037_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run37.root;
#export source_vertex=11.32; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_038_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run38.root;
#export source_vertex=30.92; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_039_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run39.root;
#export source_vertex=50.52; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_041_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run41.root;
#export source_vertex=70.12; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_042_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run42.root;
#export source_vertex=109.32; root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_043_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run43.root;
#root -q -l -b -x ../ANASEN_analysis/data/17F_Data/ProtonRun_043_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run43.root;
#root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Run_099_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run99.root;
#root -q -l -b -x ../ANASEN_analysis/data/17F_Data/Run_104_mapped.root -e 'tree->Process("MakeVertex.C+O")'; mv Analyzer_SX3.root results_run104.root;
#mv Analyzer_SX3.root results_run19.root;
fi
unset anode_offset
unset cathode_offset
unset souce_vertex
unset DATASET
unset timecut_low, timecut_high
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