new file: anasen_fem/cfrac_pred_2026-10-28/README.md
new file: anasen_fem/cfrac_pred_2026-10-28/band_centre.csv
new file: anasen_fem/cfrac_pred_2026-10-28/cfrac_pred_method.md
new file: anasen_fem/cfrac_pred_2026-10-28/check_extrapolation.log
new file: anasen_fem/cfrac_pred_2026-10-28/collect_slices.log
new file: anasen_fem/cfrac_pred_2026-10-28/fit_function.log
new file: anasen_fem/cfrac_pred_2026-10-28/function_map.csv
new file: anasen_fem/cfrac_pred_2026-10-28/make_cfrac_pred.log
new file: anasen_fem/cfrac_pred_2026-10-28/map_function.log
new file: anasen_fem/cfrac_pred_2026-10-28/slices_fit.csv
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/README.md
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/anode_dot.csv
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/elmer_phys.log
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/elmer_weight.log
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/elmergrid.log
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/geometry.py
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/probe_fields.py
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/scalars.dat
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/scalars.dat.names
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/scalars_weight.dat
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/scalars_weight.dat.names
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/wires2d.sif
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/wires2d_weight.sif
new file: anasen_fem/cfrac_pred_2026-10-28/solve_z44.7820/wires_gmsh2d_bc.py
new folder: cross_section, this folder allows for cross section calculations for the ANASEN data, a readme and some example files are provided
modified: run_tr.sh
modified: eloss_calculations/Eloss.py changed from mass fraction to stoichiometry based on the catima documentation also regeneretated files and pushed
modified: run_17F.sh
modified: run_27Al.sh changed the Eloss dedx factor based on thenew stoichimetry basis as oppoosed to the mass fraction
modified: run_tr.sh
modified: scratch/overlay_2d.C restructured the beam E gates for the 2d overlay plots
modified: TrackRecon.C loss/ halucination for pc calib due to ADC ceiling being placed on gainmatched files instead of the raw
modified: pc_energy_calibration.dat calibration fie,updated to get the "real" calibrated signal as proposed by the Alpha calibration run
modified: run_27Al.sh
modified: run_tr.sh
new file: scratch/RunwiseTrend.C diagnostics to see variationwith run
modified: slope_intercept_results_17F.dat
new file: run_misc_ede.sh same as above
modified: TrackRecon.C added beamE gated plots for the step aladder for 27Al
modified: run_17F.sh doing more files now
modified: run_27Al.sh scaling change to 0.9 to try it out
modified: run_tr.sh
modified: scratch/make_prettyplots.C add log scale option to the 2D plots
Moved some diagnostic plots because they were out of range for the boleans to actually catch them, lifted the si time ditehring so that it gets applied everywhere for smootehr time plots.
modified: eloss_calculations/Eloss.py introduced a external scaling factr to allow eloss calculations to be paired with the run scripts to figure out the right dEdx scaling
modified: run_27Al.sh
modified: TrackRecon.C added a2c0, changed a1c1 cfrac parameters based on optimisation for the alpha and source data. Might need to be changed for the reaction though dfo rsome reason the apramteres don't quite makes sense
modified: eloss_calculations/Eloss.py added a scaling factor to particles with A>10 based to make the beams go further into the detector based on reaction data
modified: pc_energy_calibration.dat halved the anode dE cal to account for the misamtch between calib and rpedict for the source data
also changes the model_invert into a function call instead of using the TF1 class
modified: TrackRecon.C refactor plus removal of older vesions of pcz and track reconstruction from the old analysis. Changed the ranges for dECalib spectra since their max was way too high.
modified: pc_energy_calibration.dat changed the calibration of anode 2-4 to the same as anode1 and 5 to 6 becuase they were causing bifuraction in signal. This might have been happening because the 17F data is poisoning the calibraion. This hypothesis
is pending validation however.
Vignesh Sitaraman