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Vignesh Sitaraman ba8e8440e8 modified: Armory/ClassPW.h 
modified:   TrackRecon.C
	modified:   eloss_calculations/Eloss.py
	modified:   eloss_calculations/alpha_lookup_50MeV_250torr_3pc.dat
	modified:   eloss_calculations/alpha_lookup_50MeV_250torr_4pc.dat
	modified:   eloss_calculations/alpha_lookup_50MeV_350torr_3pc.dat
	modified:   eloss_calculations/alpha_lookup_50MeV_350torr_4pc.dat
	modified:   eloss_calculations/aluminum_lookup_80MeV_250torr_3pc.dat
	modified:   eloss_calculations/aluminum_lookup_80MeV_250torr_4pc.dat
	modified:   eloss_calculations/aluminum_lookup_80MeV_350torr_3pc.dat
	modified:   eloss_calculations/aluminum_lookup_80MeV_350torr_4pc.dat
	new file:   eloss_calculations/deutron_lookup_30MeV_250torr_3pc.dat
	new file:   eloss_calculations/deutron_lookup_30MeV_250torr_4pc.dat
	new file:   eloss_calculations/deutron_lookup_30MeV_350torr_3pc.dat
	new file:   eloss_calculations/deutron_lookup_30MeV_350torr_4pc.dat
	modified:   eloss_calculations/fluorine_lookup_70MeV_250torr_3pc.dat
	modified:   eloss_calculations/fluorine_lookup_70MeV_250torr_4pc.dat
	modified:   eloss_calculations/fluorine_lookup_70MeV_350torr_3pc.dat
	modified:   eloss_calculations/fluorine_lookup_70MeV_350torr_4pc.dat
	modified:   eloss_calculations/oxygen_lookup_70MeV_250torr_3pc.dat
	modified:   eloss_calculations/oxygen_lookup_70MeV_250torr_4pc.dat
	modified:   eloss_calculations/oxygen_lookup_70MeV_350torr_3pc.dat
	modified:   eloss_calculations/oxygen_lookup_70MeV_350torr_4pc.dat
	new file:   eloss_calculations/proton_lookup_30MeV_250torr_3pc.dat
	new file:   eloss_calculations/proton_lookup_30MeV_250torr_4pc.dat
	new file:   eloss_calculations/proton_lookup_30MeV_350torr_3pc.dat
	new file:   eloss_calculations/proton_lookup_30MeV_350torr_4pc.dat
	modified:   run_17F.sh
	modified:   run_27Al.sh
	modified:   run_tr.sh
 2026-07-10 14:32:52 -04:00
Vignesh Sitaraman dae9ca32cc modified: MakeVertex.C 
modified:   eloss_calculations/Eloss.py
	deleted:    eloss_calculations/alpha_lookup_20MeV_3pc.dat
	deleted:    eloss_calculations/alpha_lookup_20MeV_3pc_350Torr.dat
	deleted:    eloss_calculations/alpha_lookup_20MeV_4pc.dat
	deleted:    eloss_calculations/alpha_lookup_20MeV_4pc_350Torr.dat
	renamed:    eloss_calculations/deutron_lookup_20MeV_3pc.dat -> eloss_calculations/alpha_lookup_50MeV_250torr_3pc.dat
	new file:   eloss_calculations/alpha_lookup_50MeV_250torr_4pc.dat
	new file:   eloss_calculations/alpha_lookup_50MeV_350torr_3pc.dat
	new file:   eloss_calculations/alpha_lookup_50MeV_350torr_4pc.dat
	deleted:    eloss_calculations/alpha_lookup_6.0MeV.dat
	new file:   eloss_calculations/aluminum_lookup_80MeV_250torr_3pc.dat
	renamed:    eloss_calculations/aluminum_lookup_80MeV_4pc.dat -> eloss_calculations/aluminum_lookup_80MeV_250torr_4pc.dat
	new file:   eloss_calculations/aluminum_lookup_80MeV_350torr_3pc.dat
	renamed:    eloss_calculations/aluminum_lookup_80MeV_4pc_350Torr.dat -> eloss_calculations/aluminum_lookup_80MeV_350torr_4pc.dat
	deleted:    eloss_calculations/aluminum_lookup_80MeV_3pc.dat
	deleted:    eloss_calculations/aluminum_lookup_80MeV_3pc_350Torr.dat
	new file:   eloss_calculations/fluorine_lookup_70MeV_250torr_3pc.dat
	renamed:    eloss_calculations/fluorine_lookup_70MeV_4pc.dat -> eloss_calculations/fluorine_lookup_70MeV_250torr_4pc.dat
	new file:   eloss_calculations/fluorine_lookup_70MeV_350torr_3pc.dat
	renamed:    eloss_calculations/fluorine_lookup_70MeV_4pc_350Torr.dat -> eloss_calculations/fluorine_lookup_70MeV_350torr_4pc.dat
	deleted:    eloss_calculations/fluorine_lookup_70MeV_3pc.dat
	deleted:    eloss_calculations/fluorine_lookup_70MeV_3pc_350Torr.dat
	deleted:    eloss_calculations/make_eloss_table.C
	new file:   eloss_calculations/oxygen_lookup_70MeV_250torr_3pc.dat
	renamed:    eloss_calculations/oxygen_lookup_70MeV_4pc.dat -> eloss_calculations/oxygen_lookup_70MeV_250torr_4pc.dat
	new file:   eloss_calculations/oxygen_lookup_70MeV_350torr_3pc.dat
	renamed:    eloss_calculations/oxygen_lookup_70MeV_4pc_350Torr.dat -> eloss_calculations/oxygen_lookup_70MeV_350torr_4pc.dat
	deleted:    eloss_calculations/oxygen_lookup_70MeV_3pc.dat
	deleted:    eloss_calculations/oxygen_lookup_70MeV_3pc_350Torr.dat
	deleted:    eloss_calculations/proton_lookup_20MeV_3pc.dat
	deleted:    eloss_calculations/proton_lookup_20MeV_3pc_350Torr.dat
	deleted:    eloss_calculations/proton_lookup_20MeV_4pc.dat
	deleted:    eloss_calculations/proton_lookup_20MeV_4pc_350Torr.dat
	deleted:    eloss_calculations/proton_lookup_6.0MeV.dat
 2026-07-09 12:04:53 -04:00
Vignesh Sitaraman 3cfecd4c29 modified: Armory/ClassPW.h 
modified:   TrackRecon.C
	modified:   run_tr.sh
 2026-07-06 10:31:52 -04:00
Vignesh Sitaraman 7568431c03 modified: TrackRecon.C 2026-07-01 15:00:52 -04:00
Vignesh Sitaraman 2632044293 modified: TrackRecon.C 2026-06-29 14:33:45 -04:00
Vignesh Sitaraman 370649a7ba modified: TrackRecon.C 2026-06-29 08:55:20 -04:00
Vignesh Sitaraman 48eea6d70b modified: TrackRecon.C consolidated varaibles and implemented a method to eliminate the use of a1c0 for a1c1 calculation and report the cell pitch/ mis values for only the value chosen. 
changed ranges for phi plots to -200 to 200. Folders for a1c0 and a1c1 are categorized into detector types for easier access. Using deltaphi mechanism instead of the si.phi-pc.phi formalism
    to better account for wrap around
 2026-06-28 18:06:57 -04:00
Vignesh Sitaraman 826139a26d modified: TrackRecon.C changed cathode gains for the 27 Al to have consitent cfrac and other parameters for all runs. This also should allow us to 
merge runs from thboth campaigns easier. Corrected error in proton mass in stuff copied over from Sudarsan's branch.
    Changed some variable names to mka ethem more consistent and clearer as to their actuall purpose.
	modified:   run_tr.sh
 2026-06-28 15:43:37 -04:00
Vignesh Sitaraman 18b948a335 new file: scratch/fit_a1c0_zcorr.C not sure if this is the right apporach, doing this for now as a stopgap 2026-06-26 13:41:28 -04:00
Vignesh Sitaraman 8c10235be9 modified: .gitignore 
modified:   TrackRecon.C
 2026-06-26 11:14:14 -04:00
Vignesh Sitaraman 88eba525e1 modified: TrackRecon.C included new branch for True A1C0 events, A1C1 and A1C0 events now sit in different branches than the brenchmark branch, increased time gate 2026-06-26 09:52:20 -04:00
Vignesh Sitaraman aa48a9d82f modified: TrackRecon.C 2026-06-25 16:47:56 -04:00
Vignesh Sitaraman d19f0352af modified: TrackRecon.C 2026-06-25 16:12:23 -04:00
Vignesh Sitaraman 364fce5d0c modified: run_tr.sh 2026-06-25 14:03:35 -04:00
Vignesh Sitaraman d1d265835c modified: Armory/ClassPW.h 
modified:   TrackRecon.C
 2026-06-25 14:01:54 -04:00
Vignesh Sitaraman d784650f15 modified: Armory/ClassPW.h 
new file:   CLAUDE.md
	modified:   TrackRecon.C
	modified:   run_tr.sh
 2026-06-25 08:23:09 -04:00
Vignesh Sitaraman 4249b9b848 modified: Armory/ClassPW.h 
modified:   TrackRecon.C replacing auto with const auto & to pass value instead of copying
 2026-06-24 11:59:15 -04:00
Vignesh Sitaraman 6bad95d228 modified: Armory/ClassPW.h changed the wire phiminisation from a search based function to a phi vertex solution 
modified:   TrackRecon.C changed starting aprameters for the cfrac fit, folding the lowereband from 17F into the higher band for cfrtac analysis. Exploring a new offset correction for the SX3s and QQQs based on the A1C0 Hybrid approach (WIP)
    A1C1 events are solved as A1C0 for both adjacent cells and thefinal answer with the lower Vertexperp is chosen.
	modified:   run_tr.sh reordered so that we can look at all alpha source runs as proton runs are still ebing processed
 2026-06-24 10:36:23 -04:00
Vignesh Sitaraman c2a8cbefc6 modified: TrackRecon.C 2026-06-21 15:42:04 -04:00
Vignesh Sitaraman 3ba532843d modified: TrackRecon.C included stuff to account for dead wires and thus pseudo 1 wire events, cleaned up code and added comments to make the approaches more understandable 
modified:   fit_a1c1_cfrac.C included a reference free method for gain amtching cell
	modified:   slope_intercept_results_17F.dat put in value for the missing wire gains based on other wires with similar profiles. The variation among them is minute but the vairation from one is consitent
 2026-06-19 16:28:31 -04:00
Vignesh Sitaraman 4170adb503 modified: TrackRecon.C energy theshold of 5 on wireevent filling 
modified:   run_tr.sh
 2026-06-18 19:47:21 -04:00
Vignesh Sitaraman 385f5af204 modified: TrackRecon.C corrected vertexrecon_pczfix limits 2026-06-18 17:43:48 -04:00
Vignesh Sitaraman ff21920bae modified: TrackRecon.C consolidated the a1c1 linear functions and fits 
new file:   fit_a1c1_cfrac.C
	modified:   run_tr.sh
 2026-06-18 17:41:45 -04:00
Vignesh Sitaraman 9e2023a9db modified: TrackRecon.C 
modified:   run_tr.sh
 2026-06-15 19:27:41 -04:00
Vignesh Sitaraman 819a8937f7 modified: Armory/PC_StepLadder_Correction.h 
modified:   TrackRecon.C benchmark a1c1 cfrac seems to work
	modified:   run_17F.sh
	modified:   run_27Al.sh
	modified:   run_tr.sh
 2026-06-15 18:14:24 -04:00
Vignesh Sitaraman fcd412dc59 modified: Armory/ClassPW.h fixed typo 
modified:   TrackRecon.C found some interesting behaviour in the A1c1 plots going to implement new a1c1 model invert to acount for a/c charege variation next
	modified:   scratch/plot_dither_scan.C
	modified:   scratch/scan_dither_runs.sh
 2026-06-14 13:36:58 -04:00
Vignesh Sitaraman 1bbf2ae059 modified: TrackRecon.C 
modified:   eloss_calculations/Eloss.py
	new file:   eloss_calculations/deutron_lookup_20MeV_3pc.dat for 27Al(a,d) pathway
	new file:   scratch/plot_dither_scan.C optimising dithering for A1C1 and A1C0 events
	new file:   scratch/scan_dither_runs.sh
	renamed:    scan_slope_runs.sh -> scratch/scan_slope_runs.sh
 2026-06-12 10:42:22 -04:00
Vignesh Sitaraman 7861cc496c modified: MakeVertex.C adapted from Sudarsan's pushes 
modified:   TrackRecon.C dithering was not inclded ;-;
 2026-06-12 09:14:40 -04:00
Vignesh Sitaraman f7248f6a4e modified: Armory/PC_StepLadder_Correction.h 
modified:   TrackRecon.C trying to benchmeark A1Cn events against a1c2 and failing due to flaww in logic
	modified:   run_tr.sh
	modified:   scratch/plot_slope_scan.C
 2026-06-11 16:51:41 -04:00
Vignesh Sitaraman 20f8ad227c modified: Armory/PC_StepLadder_Correction.h 
modified:   TrackRecon.C
	modified:   run_tr.sh
	modified:   scan_slope_runs.sh
	modified:   scratch/plot_slope_scan.C
 2026-06-11 09:29:14 -04:00
Vignesh Sitaraman 8dd6526221 modified: TrackRecon.C bookkeeping + introducing CO2 dependent Eloss + diagnostic plots to figure out teh slope correection for the PC model_invert 
new file:   eloss_calculations/alpha_lookup_20MeV_3pc_350Torr.dat
	new file:   eloss_calculations/alpha_lookup_20MeV_4pc_350Torr.dat
	new file:   eloss_calculations/aluminum_lookup_80MeV_3pc_350Torr.dat
	new file:   eloss_calculations/aluminum_lookup_80MeV_4pc_350Torr.dat
	new file:   eloss_calculations/fluorine_lookup_70MeV_3pc_350Torr.dat
	new file:   eloss_calculations/fluorine_lookup_70MeV_4pc_350Torr.dat
	new file:   eloss_calculations/oxygen_lookup_70MeV_3pc_350Torr.dat
	new file:   eloss_calculations/oxygen_lookup_70MeV_4pc_350Torr.dat
	new file:   eloss_calculations/proton_lookup_20MeV_3pc_350Torr.dat
	new file:   eloss_calculations/proton_lookup_20MeV_4pc_350Torr.dat
	modified:   run_tr.sh book keeping
	new file:   scan_slope_runs.sh   diagnostic plots to figure out the slope correection for the PC model_invert
	new file:   scratch/plot_slope_scan.C  diagnostic plots to figure out the slope correection for the PC model_invert
 2026-06-09 17:37:22 -04:00
Vignesh Sitaraman 948c6e6ea2 renamed: Calibration.C -> CalibrationQQQ.C changed name to make the calibration script explicitly state the kind of detectors QQQ 
renamed:    Calibration.h -> CalibrationQQQ.h
	modified:   README.md
 2026-06-08 11:48:00 -04:00
Vignesh Sitaraman 5824fa7148 modified: TrackRecon.C made variables to account for variable energy loss in 27Al and 17F runs due to beamline components 
modified:   run_17F.sh made all outputs direct to specific folders for clarity and to avoid overwriting results from different datasets
	modified:   run_27Al.sh made output folder format consitent across datasets
	modified:   run_tr.sh made output folder format consitent across datasets
 2026-06-08 11:32:39 -04:00
Vignesh Sitaraman 20dc8fef22 modified: TrackRecon.C 
modified:   run_tr.sh parralelistaion of all runs and addition of CO2 percent as an environment variable
 2026-06-08 10:39:22 -04:00
Vignesh Sitaraman 702399be84 modified: Calibration.C corrected the p energy being used to the 241Am peak 
modified:   GainMatchQQQ.C made all output files .dat instead of .txt
	modified:   TrackRecon.C made ome more plots for dissertation
	modified:   qqq_Calib.dat updated with 241Am peak position
	modified:   run_17F.sh
	modified:   run_tr.sh
	modified:   scratch/make_prettyplots.C made change so now we can input multiple runs at once and plots them together
 2026-06-07 17:18:44 -04:00
Vignesh Sitaraman 9ad4e9d5d4 modified: scratch/make_prettyplots.C 2026-06-05 19:47:05 -04:00
Vignesh Sitaraman 7891aaebca modified: scratch/scan_rf_timing.C output images instead of gif 2026-06-05 15:41:32 -04:00
Vignesh Sitaraman d8e4b22614 modified: TrackRecon.C seprating rf-mcp time for qqq into inner vs outer rings 2026-06-05 11:06:49 -04:00
Vignesh Sitaraman d5419bab9b new file: anasen_fem/1dpotplot.py 1d potential plotter from A to C from elmer output 
# modified:   anasen_fem/wires_gmsh2d_bc.py
	new file:   scratch/scan_rf_timing.C scan RF-MCP timing for runs to look at variation
 2026-06-05 11:05:40 -04:00
Vignesh Sitaraman 66fd758554 modified: scratch/make_prettyplots.C set z min 2026-06-05 08:48:42 -04:00
Vignesh Sitaraman 88cf59bce3 modified: anasen_fem/paraview_plotter.py correct path for zephyrus 2026-06-04 15:59:13 -04:00
Vignesh Sitaraman 86933ac2bf modified: TrackRecon.C 
modified:   eloss_calculations/Eloss.py changes to accoodate 3%CO2 mix instead of 4%CO2 mix
 2026-06-04 15:35:04 -04:00
Vignesh Sitaraman a875b17247 modified: TrackRecon.C 
modified:   run_tr.sh
	modified:   scratch/make_prettyplots.C
 2026-06-04 14:32:33 -04:00
Vignesh Sitaraman 6104c6f7a9 modified: TrackRecon.C 
modified:   run_17F.sh
	renamed:    scratch/make_pretty.C -> scratch/make_prettyplots.C
 2026-06-04 08:15:16 -04:00
Vignesh Sitaraman 1fb12d2f46 modified: Armory/HistPlotter.h changes to make histgrams plot in alphabetical order 
modified:   TrackRecon.C changes to maek the misc branches work
	modified:   TrackRecon.h changes to maek the misc branches work
	modified:   run_17F.sh
 2026-06-03 15:38:00 -04:00
Vignesh Sitaraman 792933de25 modified: TrackRecon.C made to changes to make the old analysis histograms switchable. Having problems with the misc branch addresses for 17F reaction data analysis. 
modified:   TrackRecon.h
 2026-06-03 14:42:16 -04:00
Vignesh Sitaraman a64d45e081 modified: TrackRecon.C changed the nA analyssis to be a little more efficient 
modified:   run_17F.sh
 2026-06-03 11:46:07 -04:00
Vignesh Sitaraman 254402b4cc new file: scratch/make_pretty.C make pretty plots for the thesis 2026-06-02 18:35:39 -04:00
Vignesh Sitaraman 787b1ca498 new file: scratch/PhiCorr.C 
renamed:    anasen_labels.csv -> scratch/anasen_labels.csv
	renamed:    grid_generate.py -> scratch/grid_generate.py
	renamed:    shadowplay.py -> scratch/shadowplay.py
 2026-05-29 13:32:32 -04:00
Vignesh Sitaraman 15773d4606 modified: TrackRecon.C 
modified:   run_27Al.sh
	modified:   run_tr.sh
 2026-05-26 15:43:21 -04:00