Moved some diagnostic plots because they were out of range for the boleans to actually catch them, lifted the si time ditehring so that it gets applied everywhere for smootehr time plots.
modified: eloss_calculations/Eloss.py introduced a external scaling factr to allow eloss calculations to be paired with the run scripts to figure out the right dEdx scaling
modified: run_27Al.sh
modified: TrackRecon.C added a2c0, changed a1c1 cfrac parameters based on optimisation for the alpha and source data. Might need to be changed for the reaction though dfo rsome reason the apramteres don't quite makes sense
modified: eloss_calculations/Eloss.py added a scaling factor to particles with A>10 based to make the beams go further into the detector based on reaction data
modified: pc_energy_calibration.dat halved the anode dE cal to account for the misamtch between calib and rpedict for the source data
modified: eloss_calculations/Eloss.py
new file: eloss_calculations/deutron_lookup_20MeV_3pc.dat for 27Al(a,d) pathway
new file: scratch/plot_dither_scan.C optimising dithering for A1C1 and A1C0 events
new file: scratch/scan_dither_runs.sh
renamed: scan_slope_runs.sh -> scratch/scan_slope_runs.sh
new file: eloss_calculations/alpha_lookup_20MeV_3pc_350Torr.dat
new file: eloss_calculations/alpha_lookup_20MeV_4pc_350Torr.dat
new file: eloss_calculations/aluminum_lookup_80MeV_3pc_350Torr.dat
new file: eloss_calculations/aluminum_lookup_80MeV_4pc_350Torr.dat
new file: eloss_calculations/fluorine_lookup_70MeV_3pc_350Torr.dat
new file: eloss_calculations/fluorine_lookup_70MeV_4pc_350Torr.dat
new file: eloss_calculations/oxygen_lookup_70MeV_3pc_350Torr.dat
new file: eloss_calculations/oxygen_lookup_70MeV_4pc_350Torr.dat
new file: eloss_calculations/proton_lookup_20MeV_3pc_350Torr.dat
new file: eloss_calculations/proton_lookup_20MeV_4pc_350Torr.dat
modified: run_tr.sh book keeping
new file: scan_slope_runs.sh diagnostic plots to figure out the slope correection for the PC model_invert
new file: scratch/plot_slope_scan.C diagnostic plots to figure out the slope correection for the PC model_invert
modified: eloss_calculations/Eloss.py making lookup tables for aluminum, fluorine, and oxygen
new file: eloss_calculations/aluminum_lookup_80MeV.dat
new file: eloss_calculations/fluorine_lookup_70MeV.dat
new file: eloss_calculations/oxygen_lookup_70MeV.dat
new file: detector_geometry.dat
new file: eloss_calculations/Eloss.py
new file: eloss_calculations/alpha_lookup_20MeV.dat
new file: eloss_calculations/alpha_lookup_6.0MeV.dat
new file: eloss_calculations/make_eloss_table.C
new file: eloss_calculations/proton_lookup_20MeV.dat
new file: eloss_calculations/proton_lookup_6.0MeV.dat
new file: grid_generate.py
new file: shadowplay.py